Csa6G041710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G041710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	30S ribosomal protein S8, putative; contains IPR000630 (Ribosomal protein S8)
Location	Chr6 : 3110669 .. 3113408 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGATTTTTGAAAACTAGCCCTTCAATTAAACAATCCCCACAGTGGTGAAGTGAACGCTCGAAACTGACTCTTCTGCTGCCCCGCTCTTCCGCCGATCACTAACTTCTCGAATCGTCCTAGGGCTGTCCCAACTACTGCTCTCCCGGTGTTCAAACACGCCGCAGGTTAAATTACAATCAATTTCCATTCCCTATTTTCCTTTTCCATTTGTCTTGCCTCACAATTTTCTCGGTAACGTAGGAAAATGGTATGATAAACGAAATTTGCTCTCAGGTTTTGTATATTTTCGTGTACTGTAAGATATGGGAAGGAGGATTTTGAACGACGCATTAAGATCTATTGTCAATGCTGAGAGGAGGGGAAACTCTATGGTGGAACTCAAACCCATTTCCACTGTCATGGCTTCTTTTCTTAAAGTCATGAAAGATCATGGTAAGACCTGTGTCTCTCTAGCTTTTTGGGTGATGAACTGACATGGTTTTTCACCTTTTCTTACGCCCTATTTATTTGCTTAGAATTTATGCTCCGGTGTTTTACTTCATGCTGTCAAGTGATAGATTCATATTGGCATTTCCTTCGTGTTGAGATCATTCGTGATTACTTTGTAGATTCGTAGATTTGTTGCTGCTGTGAAATGTGAGTGTTAAACCTCTTTTGTGATGTACAATATGCAGAAAATTGAAACAACCTTGGGCTTTACACTCTAGACTAGATTATAACTTCATCCAGCTCCTTATTAATTAGAATGCATCCTGGCATGATTTTACTTCTATGTTTAACATGACAGAGGTTATAATTGAAATGACCTTGCCTATATCCTTAATTCATTGAAAATTTTCCAGTGTGTATTAGCTTTGACAATATGGTAAATGAGTCCTTCCTGCTTCCACGCTCAATGGATCATATTATTCTAGTTTTACTAGGATCTAACGAAGGGGGAAGGAAGTTTGTTGAATACGTTTAAATTGAAATTTATTTCTTCAATTGAACTAATCATCTCATATTGAATTGACCTTTTGTAGTCATAAAAAAATAGGATTGAATTGCAAGTCACTTGTAGTCCAAAAGTTTGATATCTGCCTATCCTAGGGTGCTATTACCATTGGAAACCATTGTAGTTCTAATGGAACAGGGAGGGGAAAATCCGAATATTAGCAATATTGGAAGTTATATAATGTGAACACATTAGTTTGCTGGTTGGTATGTGTCTTTTCCATCAGAAAGTTTATGAAAATATAAATAGGTATGCCACTTTCTTTTCCAGACTTTGCTTATTTGTTATTTTGATGTCATTGAGTTGTAAAATATCCATCTTCACCATTAATAGTGATGGTTGTAATATTACAACCGTCAAGGTGCTAAGCTGGCCCGGACATTCACGAATATTAAAAAAAAAAAACATTGACTGTTGTAATGCTACTGATATTTTCCTAATAATTAACAGTAAATGTATGATGCTACTGTAAAGGGTTTCATATTGATGATCTACTCTGTACTTTCATCTCATTTTTGGAGTCTTCAAATTTTATGTAAAGGGTATATCAAGGACTATCAAGTTCACAATCCACAAAGAGTCGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCAATCACCTACAGGCAGGACATCAAGGCAAAGGATATTGAAGCTTACAGTTTACGAACACTTCCAACACGTCAGGTGTTTTAATTATTATATTTTGCTTTCAAATCTGAATGGATTTGTCAGTCAATCTTTATTATATCTAGTTGTCCTCTTTGGTCATTTGTCTACCCATGTTGAATCAACTCAACCAATATGGTCAATATGCATGCCATTAACTTAAGATTATAGTCTGGCAAAGACAAAGTAGGATCATAATTCAAAATTTAGAGACAAATGATTAAGGCGCCATTTGGTGACCAATTTGTTTTTGTTTTTGCTTCTGTTTTTTAAAGTTAAGCCTATAAACATAACTTTCACCCAACCTTCTTCTGTTATTATTTATGTTTTACCAATAGTTTAAAAAACCAAGCCAATTTTTTAAAACAAAAATAAAAGTAGCTTTAAAAAATTGTTTTTATTTTTGGAATTTGGCTAAGAATTCAACGTAGTACTTTGGGAATACGCAAATCATTATAAGAAATGGAGAGGAACTAGACTTCATTTTCAAAAACTAAAAACAAAAAACAAAATAGTTTCCAAGGGCCTAATTTTTACTTTTTGAAGTTGAAAAGCTAAATAAACCTAACCGTCAAAAATTTATGACCACACTCTTGTTGCTAAGAAACTTGGCCAAGTAGGTCTTGTTTATTTAACCAAATTTCTCACTCTCCAACCTCTCCGCTTTGTCTGCTGTGGGGCAATGTTATGTTTTCTAATTAGCCTATTCCAAGGATAAATACTTGGAACTTGTTATTTTGTTTATATTAACCAAATATTTTACTTTCGTCTCTACAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGGGGTCAGGTTCTTGGATTCTTTCATTAGAGAGCCTCCTAGTTTGGCTGTTCCTTGATTTGTGAGTTTTTTTTTTTCTTTTTCAAATGTTTCCCATGTTGCATTGGGATCTTCTTATGGCTTAGTTTTCTTATTTGTGGCCTTTTGATTTTGTATTATCAAGGCAGTGCTGTACACCTCTCTTTGAGTGTTGTTGCTCCCATCATGAATGTAA

mRNA sequence

ATGGGAAGGAGGATTTTGAACGACGCATTAAGATCTATTGTCAATGCTGAGAGGAGGGGAAACTCTATGGTGGAACTCAAACCCATTTCCACTGTCATGGCTTCTTTTCTTAAAGTCATGAAAGATCATGGGTATATCAAGGACTATCAAGTTCACAATCCACAAAGAGTCGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCAATCACCTACAGGCAGGACATCAAGGCAAAGGATATTGAAGCTTACAGTTTACGAACACTTCCAACACGTCAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGGGGTCAGGTTCTTGGATTCTTTCATTAG

Coding sequence (CDS)

ATGGGAAGGAGGATTTTGAACGACGCATTAAGATCTATTGTCAATGCTGAGAGGAGGGGAAACTCTATGGTGGAACTCAAACCCATTTCCACTGTCATGGCTTCTTTTCTTAAAGTCATGAAAGATCATGGGTATATCAAGGACTATCAAGTTCACAATCCACAAAGAGTCGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCAATCACCTACAGGCAGGACATCAAGGCAAAGGATATTGAAGCTTACAGTTTACGAACACTTCCAACACGTCAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCTTGGATCATGAAGAGGCAATGAAAAGGAATGTTGGGGGTCAGGTTCTTGGATTCTTTCATTAG

Protein sequence

MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQVLGFFH*

Homology

[Close]

BLAST of Csa6G041710 vs. Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.1e-56
Identity = 101/129 (78.29%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAE+RG + VELKP+STVM+SFLK+MK+ GYIK++QVH+P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD+KA +I  Y+ RTLPTRQWGY+VITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Csa6G041710 vs. Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-56
Identity = 102/129 (79.07%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPISTVM+SFL++MK+ GYIK++QV++P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD++AK+IE Y+ RTLPTRQWGYVVITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFF+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of Csa6G041710 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 4.7e-32
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Csa6G041710 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 6.1e-32
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Csa6G041710 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 6.1e-32
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Csa6G041710 vs. TrEMBL
Match: A0A0A0KDZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041710 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.3e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Csa6G041710 vs. TrEMBL
Match: A0A0L9VSX5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g090200 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-56
Identity = 104/129 (80.62%), Postives = 124/129 (96.12%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG +MVELKPISTVM+SFL++MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRI DCKA+TYR+D+KA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELQGRINDCKALTYRKDMKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Csa6G041710 vs. TrEMBL
Match: A0A0S3QX35_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G035200 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-56
Identity = 104/129 (80.62%), Postives = 124/129 (96.12%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG +MVELKPISTVM+SFL++MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRI DCKA+TYR+D+KA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELQGRINDCKALTYRKDMKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Csa6G041710 vs. TrEMBL
Match: V7CSB4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G305300g PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-55
Identity = 103/129 (79.84%), Postives = 122/129 (94.57%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG +MVELKPISTVM+SFL +MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLHIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVEL GRI DCKA+T+R+DIKA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELLGRINDCKALTHRKDIKARDVEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Csa6G041710 vs. TrEMBL
Match: A0A078F0Y0_BRANA (BnaC01g09060D protein OS=Brassica napus GN=BnaC01g09060D PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-55
Identity = 103/129 (79.84%), Postives = 122/129 (94.57%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPISTVM+SFL++MK+ GYIK++QVH+P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD+KAK+IE Y+ RTLPTRQWGYVV+TTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKAKEIEEYTERTLPTRQWGYVVVTTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFF+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of Csa6G041710 vs. TAIR10
Match: AT2G19720.1 (AT2G19720.1 ribosomal protein S15A B)

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-57
Identity = 101/129 (78.29%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAE+RG + VELKP+STVM+SFLK+MK+ GYIK++QVH+P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD+KA +I  Y+ RTLPTRQWGY+VITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Csa6G041710 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-57
Identity = 102/129 (79.07%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG + VELKPISTVM+SFL++MK+ GYIK++QV++P RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+TYRQD++AK+IE Y+ RTLPTRQWGYVVITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFF+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of Csa6G041710 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-33
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Csa6G041710 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-33
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LNDAL+S+ NAE+RG   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I+ R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGFFH 130
           LGFF+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Csa6G041710 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 137.1 bits (344), Expect = 7.6e-33
Identity = 62/125 (49.60%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 5   ILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRITVEL 64
           +LND L+S+ NAE++G   V ++P S V+  FL VM+ HGYI +++  +  R G+I VEL
Sbjct: 12  VLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVEL 71

Query: 65  QGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+ +C  I+ R D+  K+IE ++ + LP+RQ+GY+V+TT  GI+DHEEA K+NVGG+V
Sbjct: 72  NGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKV 131

Query: 125 LGFFH 130
           LGFF+
Sbjct: 132 LGFFY 136

[Close]

BLAST of Csa6G041710 vs. NCBI nr
Match: gi|449446227|ref|XP_004140873.1| (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 7.6e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Csa6G041710 vs. NCBI nr
Match: gi|659089827|ref|XP_008445702.1| (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALR+IVNAERRG SMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRIKDCKA+TYRQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVDLQGRIKDCKALTYRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLGFFH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Csa6G041710 vs. NCBI nr
Match: gi|920718672|gb|KOM57869.1| (hypothetical protein LR48_Vigan11g090200 [Vigna angularis])

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 104/129 (80.62%), Postives = 124/129 (96.12%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG +MVELKPISTVM+SFL++MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRI DCKA+TYR+D+KA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELQGRINDCKALTYRKDMKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Csa6G041710 vs. NCBI nr
Match: gi|1009133158|ref|XP_015883756.1| (PREDICTED: 40S ribosomal protein S15a-5 [Ziziphus jujuba])

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-56
Identity = 105/129 (81.40%), Postives = 122/129 (94.57%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAERRG S VEL+PISTVM+SFLK+MKD GYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKSTVELQPISTVMSSFLKIMKDRGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRI DCKA+T+RQDIKA+DIE Y +RTLPTRQWGYVVITTP+G+LDHEEA++RNV
Sbjct: 61  TVQLQGRINDCKALTHRQDIKARDIEQYKIRTLPTRQWGYVVITTPDGVLDHEEALRRNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Csa6G041710 vs. NCBI nr
Match: gi|951004548|ref|XP_014507890.1| (PREDICTED: 40S ribosomal protein S15a-5 [Vigna radiata var. radiata])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 103/129 (79.84%), Postives = 124/129 (96.12%), Query Frame = 1


Query: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60
           MGRRILNDALRS+VNAE+RG +MVELKPISTVM+SFL++MK+HGYIKD+QV++P RVGRI
Sbjct: 1   MGRRILNDALRSMVNAEKRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRI DCKA+T+R+DIKA+D+EAY L+TLPT QWGYVVITTP+G+LDHEEA+K+NV
Sbjct: 61  TVELQGRINDCKALTHRKDIKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNV 120

Query: 121 GGQVLGFFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGYFH 129

The following BLAST results are available for this feature:

BLAST of Csa6G041710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R15A2_ARATH	2.1e-56	78.29	40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1	[more]
R15A5_ARATH	2.7e-56	79.07	40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1	[more]
RS15A_DAUCA	4.7e-32	51.20	40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3	[more]
RS15A_BRANA	6.1e-32	51.20	40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3	[more]
R15A1_ARATH	6.1e-32	51.20	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2	[more]

BLAST of Csa6G041710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDZ7_CUCSA	5.3e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041710 PE=4 SV=1	[more]
A0A0L9VSX5_PHAAN	1.9e-56	80.62	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g090200 PE=3 SV=1	[more]
A0A0S3QX35_PHAAN	1.9e-56	80.62	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G035200 PE=...	[more]
V7CSB4_PHAVU	3.6e-55	79.84	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G305300g PE=3 SV=1	[more]
A0A078F0Y0_BRANA	3.6e-55	79.84	BnaC01g09060D protein OS=Brassica napus GN=BnaC01g09060D PE=3 SV=1	[more]

BLAST of Csa6G041710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19720.1	1.2e-57	78.29	ribosomal protein S15A B	[more]
AT4G29430.1	1.5e-57	79.07	ribosomal protein S15A E	[more]
AT1G07770.1	3.4e-33	51.20	ribosomal protein S15A	[more]
AT5G59850.1	3.4e-33	51.20	Ribosomal protein S8 family protein	[more]
AT2G39590.1	7.6e-33	49.60	Ribosomal protein S8 family protein	[more]

BLAST of Csa6G041710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446227\|ref\|XP_004140873.1\|	7.6e-67	100.00	PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis sativus]	[more]
gi\|659089827\|ref\|XP_008445702.1\|	7.9e-64	95.35	PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo]	[more]
gi\|920718672\|gb\|KOM57869.1\|	2.7e-56	80.62	hypothetical protein LR48_Vigan11g090200 [Vigna angularis]	[more]
gi\|1009133158\|ref\|XP_015883756.1\|	4.6e-56	81.40	PREDICTED: 40S ribosomal protein S15a-5 [Ziziphus jujuba]	[more]
gi\|951004548\|ref\|XP_014507890.1\|	1.0e-55	79.84	PREDICTED: 40S ribosomal protein S15a-5 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000630	Ribosomal_S8
IPR000630	Ribosomal_S8

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU116567	cucumber EST collection version 3.0	transcribed_cluster
CU135355	cucumber EST collection version 3.0	transcribed_cluster
CU155494	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G041710.1	Csa6G041710.1	mRNA
Csa6G041710.2	Csa6G041710.2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU155494	CU155494	transcribed_cluster
CU116567	CU116567	transcribed_cluster
CU135355	CU135355	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..129 score: 6.0
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 6..127 score: 1.1
IPR000630	Ribosomal protein S8	unknown	SSF56047	Ribosomal protein S8	coord: 3..128 score: 2.09
None	No IPR available	GENE3D	G3DSA:3.30.1370.30		coord: 5..68 score: 1.3
None	No IPR available	GENE3D	G3DSA:3.30.1490.10		coord: 70..127 score: 4.7
None	No IPR available	PANTHER	PTHR11758:SF11	40S RIBOSOMAL PROTEIN S15A-2-RELATED	coord: 1..129 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G041710	Cla007215	Watermelon (97103) v1	cuwmB474
Csa6G041710	MELO3C011626	Melon (DHL92) v3.5.1	cumeB476
Csa6G041710	ClCG08G004310	Watermelon (Charleston Gray)	cuwcgB502
Csa6G041710	Lsi08G003530	Bottle gourd (USVL1VR-Ls)	culsiB473
Csa6G041710	MELO3C011626.2	Melon (DHL92) v3.6.1	cumedB455
Csa6G041710	Cla97C08G147540	Watermelon (97103) v2	cuwmbB493
Csa6G041710	Bhi04G001640	Wax gourd	cuwgoB590
Csa6G041710	CSPI06G03470	Wild cucumber (PI 183967)	cpicuB314
Csa6G041710	Cucsa.365110	Cucumber (Gy14) v1	cgycuB511
Csa6G041710	CmaCh08G000790	Cucurbita maxima (Rimu)	cmacuB910
Csa6G041710	CmoCh08G000820	Cucurbita moschata (Rifu)	cmocuB896
Csa6G041710	Cp4.1LG17g09900	Cucurbita pepo (Zucchini)	cpecuB332
Csa6G041710	CsGy6G003460	Cucumber (Gy14) v2	cgybcuB282
Csa6G041710	Carg04908	Silver-seed gourd	carcuB0092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G041710	Watermelon (97103) v2	cuwmbB505
Csa6G041710	Cucurbita maxima (Rimu)	cmacuB373
Csa6G041710	Cucurbita moschata (Rifu)	cmocuB364
Csa6G041710	Watermelon (97103) v1	cuwmB459
Csa6G041710	Cucurbita pepo (Zucchini)	cpecuB146
Csa6G041710	Silver-seed gourd	carcuB0248