CU128844 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU128844
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRegulator of Vps4 activity in the MVB pathway protein, putative
LocationChr3 : 16453162 .. 16453401 (-)
Sequence length240
The following sequences are available for this feature:

transcribed_cluster sequence

TTAAAAGATTTGAAACCTTTTCTGATTCTCTTTCGGCTTAAATGCAGGGAATGCCCTGGCGAAGTTAAGGAGGCGATATCGAGTCTGATATTTGCAGCTTCAAGGTGCGGAGAGTTTCCAGAACTTCAAGAGATTCGTCGGATTTTCGAGTTGAAGTTTGGTGCGGAGTTTGCAAGCAGTGCCATTGATTTACGCAACAACTGCGGTGTTAGTACCAAGGTGAGTTTTGATACTTACCAA
Library categoryESTs
fruit (8DPP) library1
BLAST of CU128844 vs. TrEMBL
Match: A0A0A0L6Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271380 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-24
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1

Query: 46  RECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV- 105
           +ECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTK+ 
Sbjct: 99  KECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKMI 158

Query: 106 -SFDTYQ 165
             F T Q
Sbjct: 159 QKFSTKQ 165

Query: 166 225
           
Sbjct: 219 165

Query: 226 241
           
Sbjct: 279 165

BLAST of CU128844 vs. TrEMBL
Match: B9RSL0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1725700 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-17
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1

Query: 40  KCRECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTK 99
           K +EC  EVKEAIS+LIFA+SRCGEFPELQEIR IFE KFG EFA+ AI+LRNNCGV+ K
Sbjct: 95  KEKECHDEVKEAISTLIFASSRCGEFPELQEIRGIFESKFGKEFAARAIELRNNCGVNPK 154

Query: 100 V 159
           +
Sbjct: 155 I 155

Query: 160 219
           
Sbjct: 215 155

Query: 220 223
           
Sbjct: 275 155

BLAST of CU128844 vs. TrEMBL
Match: M1AZM5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012974 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1

Query: 52  CPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV 111
           CP E+KEAISSLIFAASRCGEFPELQE+R IF  +FG EFA+ A++LRNNCGV+TK+
Sbjct: 99  CPEELKEAISSLIFAASRCGEFPELQELRAIFTSRFGKEFAARAVELRNNCGVNTKM 155

Query: 112 171
           
Sbjct: 159 155

Query: 172 223
           
Sbjct: 219 155

BLAST of CU128844 vs. TrEMBL
Match: K4BXC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1

Query: 52  CPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV 111
           CP E+KEAISSLIFAASRCGEFPELQE+R IF  +FG EFA+ A++LRNNCGV+TK+
Sbjct: 99  CPEELKEAISSLIFAASRCGEFPELQELRGIFTSRFGKEFAARAVELRNNCGVNTKM 155

Query: 112 171
           
Sbjct: 159 155

Query: 172 223
           
Sbjct: 219 155

BLAST of CU128844 vs. TrEMBL
Match: A0A0D2SGK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G138400 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-16
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1

Query: 46  RECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV 105
           RECP E+KEAIS L+FA+SRCG+FPELQEIR IF  ++G EF + AI+LRNNCGV+TK+
Sbjct: 97  RECPDELKEAISGLLFASSRCGDFPELQEIRAIFTSRYGKEFVARAIELRNNCGVNTKI 155

Query: 106 165
           
Sbjct: 157 155

Query: 166 223
           
Sbjct: 217 155

BLAST of CU128844 vs. NCBI nr
Match: gi|778680671|ref|XP_011651370.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1

Query: 46  RECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV- 105
           +ECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTK+ 
Sbjct: 99  KECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKMI 158

Query: 106 -SFDTYQ 165
             F T Q
Sbjct: 159 QKFSTKQ 165

Query: 166 225
           
Sbjct: 219 165

Query: 226 241
           
Sbjct: 279 165

BLAST of CU128844 vs. NCBI nr
Match: gi|778680668|ref|XP_011651369.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1

Query: 46  RECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV- 105
           +ECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTK+ 
Sbjct: 99  KECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKMI 158

Query: 106 -SFDTYQ 165
             F T Q
Sbjct: 159 QKFSTKQ 165

Query: 166 225
           
Sbjct: 219 165

Query: 226 241
           
Sbjct: 279 165

BLAST of CU128844 vs. NCBI nr
Match: gi|659123287|ref|XP_008461584.1| (PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-23
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 1

Query: 28  LFRLKCRECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCG 87
           LF++  +ECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFG EFASSAIDLRNNCG
Sbjct: 94  LFQMN-KECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGTEFASSAIDLRNNCG 153

Query: 88  VSTKV--SFDTYQ 147
           VS K+   F T Q
Sbjct: 154 VSPKMIQKFSTKQ 165

Query: 148 207
           
Sbjct: 214 165

Query: 208 241
           
Sbjct: 274 165

BLAST of CU128844 vs. NCBI nr
Match: gi|747098358|ref|XP_011097187.1| (PREDICTED: uncharacterized protein LOC105176162 [Sesamum indicum])

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-18
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1

Query: 46  RECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKV 105
           RECP E+KE ISSLIFAASRCGEFPELQEIR  F  KFG +FA SA++LRNNCGVS K+
Sbjct: 97  RECPDELKEVISSLIFAASRCGEFPELQEIRAFFTSKFGKDFAMSAVELRNNCGVSPKI 155

Query: 106 165
           
Sbjct: 157 155

Query: 166 223
           
Sbjct: 217 155

BLAST of CU128844 vs. NCBI nr
Match: gi|255551366|ref|XP_002516729.1| (PREDICTED: IST1-like protein isoform X1 [Ricinus communis])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1

Query: 40  KCRECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTK 99
           K +EC  EVKEAIS+LIFA+SRCGEFPELQEIR IFE KFG EFA+ AI+LRNNCGV+ K
Sbjct: 95  KEKECHDEVKEAISTLIFASSRCGEFPELQEIRGIFESKFGKEFAARAIELRNNCGVNPK 154

Query: 100 V 159
           +
Sbjct: 155 I 155

Query: 160 219
           
Sbjct: 215 155

Query: 220 223
           
Sbjct: 275 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L6Y2_CUCSA5.8e-2489.55Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271380 PE=4 SV=1[more]
B9RSL0_RICCO4.0e-1775.41Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1725700 PE=4 SV=1[more]
M1AZM5_SOLTU1.2e-1675.44Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012974 PE=4 SV=1[more]
K4BXC9_SOLLC1.5e-1675.44Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0D2SGK7_GOSRA2.6e-1669.49Uncharacterized protein OS=Gossypium raimondii GN=B456_005G138400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778680671|ref|XP_011651370.1|1.7e-2489.55PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus][more]
gi|778680668|ref|XP_011651369.1|1.7e-2489.55PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus][more]
gi|659123287|ref|XP_008461584.1|2.4e-2382.19PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo][more]
gi|747098358|ref|XP_011097187.1|5.3e-1876.27PREDICTED: uncharacterized protein LOC105176162 [Sesamum indicum][more]
gi|255551366|ref|XP_002516729.1|1.5e-1775.41PREDICTED: IST1-like protein isoform X1 [Ricinus communis][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR005061Ist1
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G271380Csa3G271380gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MP8YEFKNP3UI02MP8YEEST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005061Vacuolar protein sorting-associated protein Ist1PANTHERPTHR12161UNCHARACTERIZED DUF292coord: 16..74
score: 1.4
IPR005061Vacuolar protein sorting-associated protein Ist1PFAMPF03398Ist1coord: 15..74
score: 6.4
NoneNo IPR availablePANTHERPTHR12161:SF23REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEINcoord: 16..74
score: 1.4