CU127411 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU127411
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr1 : 15141870 .. 15142115 (-)
Sequence length247
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGGACGTGAGGCAAGGTGAAAAGGTTCGTGGCTTTATAGTGAAGACAGGAATGGATTTGGATAATTATGTCTATAATTCACTTATAGATATGTATTATGAATTAAGCAATGTTGAGAATGCTAAGAAGTTATTTGACGAAATGACGACTAGAGATTCGGTTTCTTGGAACGTTATGATTTCTGGGTATGTTAGGTGTCGTAGATTTGAGGATGCTATCAATACATTTTAGGGGAAATGCAGCAAGAG
Library
Library categoryESTs
fruit (8DPP) library1
Homology
[Close]
BLAST of CU127411 vs. Swiss-Prot
Match: PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-15
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 3 

Query: 6   VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 65
           V +GEKV G+ VK G++ D+YV NSL+ MY  L  +E   K+FDEM  RD VSWN +IS 
Sbjct: 62  VIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISS 121

Query: 66  YVRCRRFEDAINTF 125
           YV   RFEDAI  F
Sbjct: 122 YVGNGRFEDAIGVF 135

Query: 126  185
           
Sbjct: 182  135

Query: 186  228
           
Sbjct: 242  135


HSP 2 Score: 42.0 bits (97), Expect = 3.7e-03
Identity = 16/52 (30.77%), Postives = 28/52 (53.85%), Query Frame = 3 

Query: 72  YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 131
           + S++  Y     ++ A+ LF+    +D V W  M++GYV+  RF++A+  F
Sbjct: 216 WTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267

Query: 132  191
           
Sbjct: 276  267

Query: 192  228
           
Sbjct: 336  267

[Close]
BLAST of CU127411 vs. Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12
Identity = 26/75 (34.67%), Postives = 54/75 (72.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           DV +G+++ G++++ G+D D Y+ +SL+DMY + + +E+++++F  +  RD +SWN +++
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316

Query: 63  GYVRCRRFEDAINTF 122
           GYV+  R+ +A+  F
Sbjct: 317 GYVQNGRYNEALRLF 331

Query: 123  182
           
Sbjct: 377  331

Query: 183  228
           
Sbjct: 437  331


HSP 2 Score: 54.7 bits (130), Expect = 5.5e-07
Identity = 21/71 (29.58%), Postives = 42/71 (59.15%), Query Frame = 3 

Query: 15  GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 74
           G+++ G++++ G   + ++ ++L+DMY +  N++ A+K+FD M   D VSW  +I G+  
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 75  CRRFEDAINTF 134
                +A++ F
Sbjct: 422 HGHGHEAVSLF 432

Query: 135  194
           
Sbjct: 482  432

Query: 195  228
           
Sbjct: 542  432


HSP 3 Score: 51.2 bits (121), Expect = 6.1e-06
Identity = 32/108 (29.63%), Postives = 49/108 (45.37%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMY--------------------YELSN---- 62
           D+R GE V GFIV+ GMD D Y  N+L++MY                       SN    
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDE 179

Query: 63  ------------VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAI 122
                       +++ +++F+ M  +D VS+N +I+GY +   +EDA+
Sbjct: 180 DVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDAL 227

Query: 123  182
           
Sbjct: 240  227

Query: 183  219
           
Sbjct: 300  227

[Close]
BLAST of CU127411 vs. Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-12
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 3 

Query: 18  EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRC 77
           E + GF+VK G+D D +V N+L+DMY  L  ++ A ++F +M  RD V+WN MI+GYV  
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 78  RRFEDAI 137
              EDA+
Sbjct: 485 EHHEDAL 491

Query: 138  197
           
Sbjct: 545  491

Query: 198  219
           
Sbjct: 605  491


HSP 2 Score: 48.1 bits (113), Expect = 5.2e-05
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 3 

Query: 6   VRQGEKVRGFIVKTG-MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 65
           +R G+++  + +K G +D +++V ++L+DMY     V + +++FD M  R    WN MI+
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377

Query: 66  GYVRCRRFEDAINTF*G 125
           GY +    ++A+  F G
Sbjct: 378 GYSQNEHDKEALLLFIG 394

Query: 126  185
           
Sbjct: 438  394

Query: 186  234
           
Sbjct: 498  394


HSP 3 Score: 45.8 bits (107), Expect = 2.6e-04
Identity = 22/76 (28.95%), Postives = 41/76 (53.95%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNY-VYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 62
           D+  G+++   + K G  +D+  V N+L+++Y +  +     K+FD ++ R+ VSWN +I
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171

Query: 63  SGYVRCRRFEDAINTF 122
           S      ++E A+  F
Sbjct: 172 SSLCSFEKWEMALEAF 187

Query: 123  182
           
Sbjct: 232  187

Query: 183  228
           
Sbjct: 292  187

[Close]
BLAST of CU127411 vs. Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-12
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3 

Query: 21  KVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCR 80
           +V GF+++ G D D +V N +I  Y +  N+E+A+K+FDEM+ RD VSWN MISGY +  
Sbjct: 153 QVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSG 212

Query: 81  RFED 140
            FED
Sbjct: 213 SFED 216

Query: 141  200
           
Sbjct: 273  216

Query: 201  213
           
Sbjct: 333  216


HSP 2 Score: 45.1 bits (105), Expect = 4.4e-04
Identity = 18/62 (29.03%), Postives = 35/62 (56.45%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           +++ G+++  F ++ G D + YV  S+ID Y +L  +  A+++FD    R  ++W  +I+
Sbjct: 381 NLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIIT 440

Query: 63  GY 122
            Y
Sbjct: 441 AY 442

Query: 123  182
           
Sbjct: 501  442

Query: 183  189
           
Sbjct: 561  442


HSP 3 Score: 44.3 bits (103), Expect = 7.5e-04
Identity = 22/75 (29.33%), Postives = 44/75 (58.67%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           D+  G +V   +++  + +D  + N++I  Y +  +++ A+ LFDEM+ +DSV++  +IS
Sbjct: 249 DLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIIS 308

Query: 63  GYVRCRRFEDAINTF 122
           GY+     ++A+  F
Sbjct: 309 GYMAHGLVKEAMALF 323

Query: 123  182
           
Sbjct: 369  323

Query: 183  228
           
Sbjct: 429  323


HSP 4 Score: 40.4 bits (93), Expect = 1.1e-02
Identity = 20/56 (35.71%), Postives = 28/56 (50.00%), Query Frame = 3 

Query: 60  DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 119
           D+  Y ++I  Y     V+ A  LF EM +    +WN MISG ++    E+ IN+F
Sbjct: 299 DSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSF 354

Query: 120  179
           
Sbjct: 359  354

Query: 180  228
           
Sbjct: 419  354

[Close]
BLAST of CU127411 vs. Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-11
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDL-DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 62
           D+  G  V GF ++ G DL D +V NSLIDMY +  +V++A ++FDE T R+ VSWN ++
Sbjct: 262 DIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSIL 321

Query: 63  SGYVRCRRFEDAINTF 122
           +G+V  +R+++A+  F
Sbjct: 322 AGFVHNQRYDEALEMF 337

Query: 123  182
           
Sbjct: 382  337

Query: 183  228
           
Sbjct: 442  337


HSP 2 Score: 43.5 bits (101), Expect = 1.3e-03
Identity = 21/58 (36.21%), Postives = 33/58 (56.90%), Query Frame = 3 

Query: 12  QGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 71
           QG  ++  ++K G +    V NS+ D Y +  ++ +  + FD M +RDSVSWNV++ G
Sbjct: 65  QGRCIQASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFG 122

Query: 72   131
           
Sbjct: 125  122

Query: 132  186
           
Sbjct: 185  122


HSP 3 Score: 42.4 bits (98), Expect = 2.8e-03
Identity = 18/63 (28.57%), Postives = 36/63 (57.14%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNY-VYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMI 62
           D+R  +   G  ++  + +++  V  S++D Y +   +E A++ FD++T ++ +SW V+I
Sbjct: 462 DLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVII 521

Query: 63  SGY 122
           S Y
Sbjct: 522 SAY 524

Query: 123  182
           
Sbjct: 582  524

Query: 183  189
           
Sbjct: 642  524

[Close]
BLAST of CU127411 vs. TrEMBL
Match: A0A0A0LWP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418260 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS
Sbjct: 288 DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 347

Query: 63  GYVRCRRFEDAINTF 122
           GYVRCRRFEDAINTF
Sbjct: 348 GYVRCRRFEDAINTF 362

Query: 123  182
           
Sbjct: 408  362

Query: 183  228
           
Sbjct: 468  362

[Close]
BLAST of CU127411 vs. TrEMBL
Match: A0A0A0LWP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418260 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.4e-03
Identity = 21/71 (29.58%), Postives = 41/71 (57.75%), Query Frame = 3 

Query: 15  GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 74
           G+++  ++ K  +     + N+L+DMY +   +  A+ +FDEM+ ++ + W  MISGY+ 
Sbjct: 394 GDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 453

Query: 75  CRRFEDAINTF 134
           C    +A + F
Sbjct: 454 CGDLREARDLF 463

Query: 135  194
           
Sbjct: 514  463

Query: 195  228
           
Sbjct: 574  463


HSP 2 Score: 47.0 bits (110), Expect = 1.3e-02
Identity = 22/60 (36.67%), Postives = 34/60 (56.67%), Query Frame = 3 

Query: 51  MDLDNYV-YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 110
           M + N + + S+I  Y    ++  A+ LFD+   RD V W  MI+GYV+   F+DA+  F
Sbjct: 435 MSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALF 494

Query: 111  170
           
Sbjct: 495  494

Query: 171  228
           
Sbjct: 555  494


HSP 3 Score: 105.9 bits (263), Expect = 2.3e-20
Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           +VR+GEKV GF+VK+G++ D YV NSL+DMY E+  V+N +++F+EM  RD VSWNV+IS
Sbjct: 147 EVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLIS 206

Query: 63  GYVRCRRFEDAINTF 122
           GYV+CRR+EDA++ F
Sbjct: 207 GYVKCRRYEDAVDVF 221

Query: 123  182
           
Sbjct: 267  221

Query: 183  228
           
Sbjct: 327  221

[Close]
BLAST of CU127411 vs. TrEMBL
Match: F6HH61_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04660 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-03
Identity = 21/66 (31.82%), Postives = 38/66 (57.58%), Query Frame = 3 

Query: 30  GFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFE 89
           GF +K G        N+L+DMY +  ++  A+++F++M  +  + W  M+SGYV C + +
Sbjct: 265 GFTIKIG--------NALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLD 322

Query: 90  DAINTF 149
           +A   F
Sbjct: 325 EARELF 322

Query: 150  209
           
Sbjct: 385  322

Query: 210  228
           
Sbjct: 445  322


HSP 2 Score: 47.0 bits (110), Expect = 1.3e-02
Identity = 19/52 (36.54%), Postives = 31/52 (59.62%), Query Frame = 3 

Query: 72  YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 131
           + S++  Y     ++ A++LF+    RD V W  MI+GYV+  RF+DA+  F
Sbjct: 302 WTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALF 353

Query: 132  191
           
Sbjct: 362  353

Query: 192  228
           
Sbjct: 422  353


HSP 3 Score: 104.4 bits (259), Expect = 6.8e-20
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 3 

Query: 15  GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 74
           GEK+RGF+VKTG++ D YV NSLIDMY +   ++  KKLFDEM  RD ++WNVMISGYV+
Sbjct: 81  GEKIRGFLVKTGLEFDTYVCNSLIDMYAQFGLIDVMKKLFDEMPDRDVITWNVMISGYVK 140

Query: 75  CRRFEDAINTF 134
           CR+FEDAI+ F
Sbjct: 141 CRKFEDAIDVF 151

Query: 135  194
           
Sbjct: 201  151

Query: 195  228
           
Sbjct: 261  151

[Close]
BLAST of CU127411 vs. TrEMBL
Match: A0A067KKK3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13269 PE=4 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-01
Identity = 16/59 (27.12%), Postives = 34/59 (57.63%), Query Frame = 3 

Query: 39  VKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA 98
           V+  ++  + + N+L+DMY +   +  A+ +F+EM  ++ + W  M+ GY  C   ++A
Sbjct: 190 VREKLEFSSIIGNALLDMYCKCGCLRIARAIFEEMPYKNVICWTTMVYGYANCGELDEA 248

Query: 99   158
           
Sbjct: 250  248

Query: 159  216
           
Sbjct: 310  248


HSP 2 Score: 42.0 bits (97), Expect = 4.1e-01
Identity = 17/52 (32.69%), Postives = 30/52 (57.69%), Query Frame = 3 

Query: 72  YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 131
           + +++  Y     ++ A+ LF+    RD V W  MI+GYV+  RF++A+  F
Sbjct: 232 WTTMVYGYANCGELDEARALFERSPVRDVVIWTAMINGYVQFNRFDEAVALF 283

Query: 132  191
           
Sbjct: 292  283

Query: 192  228
           
Sbjct: 352  283


HSP 3 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           +V + EK+RG + KTG++ D YV NSLIDMY +L+  +  K LFDEM  RD +SWNVMIS
Sbjct: 152 EVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMIS 211

Query: 63  GYVRCRRFEDAINTF 122
           GYV+CRRFEDAIN F
Sbjct: 212 GYVKCRRFEDAINVF 226

Query: 123  182
           
Sbjct: 272  226

Query: 183  228
           
Sbjct: 332  226

[Close]
BLAST of CU127411 vs. TrEMBL
Match: B9STP1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0826200 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.4e-03
Identity = 22/73 (30.14%), Postives = 41/73 (56.16%), Query Frame = 3 

Query: 15  GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 74
           G+K+  + V+  +     + N+L+DMY +   +  A+ +F+EM +++ + W  M+SGY  
Sbjct: 258 GKKIHHY-VRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYAN 317

Query: 75  CRRFEDAINTF*G 134
           C   E+A   F G
Sbjct: 318 CGELEEARELFEG 329

Query: 135  194
           
Sbjct: 378  329

Query: 195  234
           
Sbjct: 438  329


HSP 2 Score: 43.9 bits (102), Expect = 1.1e-01
Identity = 18/52 (34.62%), Postives = 31/52 (59.62%), Query Frame = 3 

Query: 72  YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTF 131
           + +++  Y     +E A++LF+    RD V W  MI+GYV+  RF++A+  F
Sbjct: 307 WTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALF 358

Query: 132  191
           
Sbjct: 367  358

Query: 192  228
           
Sbjct: 427  358


HSP 3 Score: 102.4 bits (254), Expect = 2.6e-19
Identity = 44/75 (58.67%), Postives = 61/75 (81.33%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           +VR+GEK+  F+VKTG++ D YV NSL+DMY EL  VE   ++F+EM  RD+VSWN+MIS
Sbjct: 103 EVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMIS 162

Query: 63  GYVRCRRFEDAINTF 122
           GYVRC+RFE+A++ +
Sbjct: 163 GYVRCKRFEEAVDVY 177

Query: 123  182
           
Sbjct: 223  177

Query: 183  228
           
Sbjct: 283  177

[Close]
BLAST of CU127411 vs. NCBI nr
Match: gi|700210313|gb|KGN65409.1| (hypothetical protein Csa_1G418260 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.7e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS
Sbjct: 288 DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 347

Query: 63  GYVRCRRFEDAINTF 122
           GYVRCRRFEDAINTF
Sbjct: 348 GYVRCRRFEDAINTF 362

Query: 123  182
           
Sbjct: 408  362

Query: 183  228
           
Sbjct: 468  362

[Close]
BLAST of CU127411 vs. NCBI nr
Match: gi|659130070|ref|XP_008464984.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           DV QGEK+ GF+VKTGM+LDNYV NSL+DMY EL NVENAKKLFDEMTTRDSVSWNVMIS
Sbjct: 150 DVGQGEKLHGFVVKTGMNLDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMIS 209

Query: 63  GYVRCRRFEDAINTF 122
           GYV CRRFEDAINTF
Sbjct: 210 GYVGCRRFEDAINTF 224

Query: 123  182
           
Sbjct: 270  224

Query: 183  228
           
Sbjct: 330  224

[Close]
BLAST of CU127411 vs. NCBI nr
Match: gi|1009160176|ref|XP_015898211.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Ziziphus jujuba])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           ++R+GEK  GF++KTG++ D YV NSLIDMY +L  VE  +KLF+EM  RDSVSWNV IS
Sbjct: 150 EIREGEKAHGFVIKTGLEFDTYVCNSLIDMYSQLGKVEYFRKLFEEMPERDSVSWNVTIS 209

Query: 63  GYVRCRRFEDAINTF 122
           GYVRCRRF+DA+N F
Sbjct: 210 GYVRCRRFDDALNVF 224

Query: 123  182
           
Sbjct: 270  224

Query: 183  228
           
Sbjct: 330  224

[Close]
BLAST of CU127411 vs. NCBI nr
Match: gi|297738897|emb|CBI28142.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           +VR+GEKV GF+VK+G++ D YV NSL+DMY E+  V+N +++F+EM  RD VSWNV+IS
Sbjct: 147 EVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLIS 206

Query: 63  GYVRCRRFEDAINTF 122
           GYV+CRR+EDA++ F
Sbjct: 207 GYVKCRRYEDAVDVF 221

Query: 123  182
           
Sbjct: 267  221

Query: 183  228
           
Sbjct: 327  221

[Close]
BLAST of CU127411 vs. NCBI nr
Match: gi|359484390|ref|XP_002281719.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Vitis vinifera])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 3 

Query: 3   DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 62
           +VR+GEKV GF+VK+G++ D YV NSL+DMY E+  V+N +++F+EM  RD VSWNV+IS
Sbjct: 147 EVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLIS 206

Query: 63  GYVRCRRFEDAINTF 122
           GYV+CRR+EDA++ F
Sbjct: 207 GYVKCRRYEDAVDVF 221

Query: 123  182
           
Sbjct: 267  221

Query: 183  228
           
Sbjct: 327  221

The following BLAST results are available for this feature:
BLAST of CU127411 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR65_ARATH1.1e-1555.41Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN... [more]
PP251_ARATH2.6e-1234.67Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
PP285_ARATH4.4e-1246.27Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop... [more]
PP191_ARATH4.4e-1250.00Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN... [more]
PP159_ARATH2.8e-1143.42Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN... [more]
BLAST of CU127411 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWP8_CUCSA2.0e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418260 PE=4 SV=1[more]
A0A0A0LWP8_CUCSA4.4e-0329.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418260 PE=4 SV=1[more]
F6HH61_VITVI7.5e-0331.82Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04660 PE=4 SV=... [more]
A0A067KKK3_JATCU1.4e-0127.12Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13269 PE=4 SV=1[more]
B9STP1_RICCO4.4e-0330.14Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
BLAST of CU127411 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210313|gb|KGN65409.1|9.7e-36100.00hypothetical protein Csa_1G418260 [Cucumis sativus][more]
gi|659130070|ref|XP_008464984.1|1.4e-2986.67PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo][more]
gi|1009160176|ref|XP_015898211.1|2.7e-2265.33PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Ziziphus jujub... [more]
gi|297738897|emb|CBI28142.3|1.1e-2060.00unnamed protein product [Vitis vinifera][more]
gi|359484390|ref|XP_002281719.2|1.1e-2060.00PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Vitis vinifera... [more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G418260Csa1G418260gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02M5BDIFKNP3UI02M5BDIEST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 24..51
score: 3.2E-6coord: 54..76
score: 9.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 54..76
score: 1.8E-5coord: 23..52
score: 8.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 21..55
score: 9.778coord: 56..83
score: 5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..76
score: 2.4
NoneNo IPR availablePANTHERPTHR24015:SF105SUBFAMILY NOT NAMEDcoord: 3..76
score: 2.4