CU127334 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU127334
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Chr3 : 15428524 .. 15428766 (-)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAGAAGATGGGTGATTATAGGTGTTGCCCAGATACGTTATCATTCAATAATTTGATCGAACAATTATGTAATAATGGAATGTTGGCTGAAGCTGAGATGCTTTACGGAACAATGGATGATAAGGGAGTAAACCCGGACGAGTTTACTATGGTTTGTTGATGGATTCTTGCTTTAAAAAAAACAGGGCAGATGATGCAGCTGCATATTTTAGAAAAATGGTAGATTCTGGACTCAGACCCAA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU127334 vs. Swiss-Prot
Match: PP273_ARATH (Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 71
           +MGD++C PDTLSFNNL+ QLC+N +LAEAE LYG M++K V PDE+T
Sbjct: 375 QMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYT 422

Query: 72   131
           
Sbjct: 435  422

Query: 132  156
           
Sbjct: 495  422

HSP 2 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 2


Query: 137 KPGRVYYGLLMDSCFKKNRADDAAAYFRKMVDSGLRP 196
           KP    YGLLMD+CFK+ + D+ AAY++ MV+S LRP
Sbjct: 417 KPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRP 453

Query: 197  248
           
Sbjct: 477  453

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BLAST of CU127334 vs. TrEMBL
Match: A0A0A0L7B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239860 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3


Query: 9   EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 68
           EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT
Sbjct: 379 EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 427

Query: 69   128
           
Sbjct: 439  427

Query: 129  156
           
Sbjct: 499  427

[Close]

BLAST of CU127334 vs. TrEMBL
Match: A0A0A0L7B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239860 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2


Query: 131 GSKPGRVYYGLLMDSCFKKNRADDAAAYFRKMVDSGLRP 190
           G  P    YGLLMDSCFKKNRADDAAAYFRKMVDSGLRP
Sbjct: 420 GVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMVDSGLRP 458

Query: 191  248
           
Sbjct: 480  458

HSP 2 Score: 99.4 bits (246), Expect = 2.2e-18
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3


Query: 9   EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 68
           E+MGDYRC PDTLSFNNLIEQLCNNGMLAEAEMLYGTM +KGVNPDEFT
Sbjct: 379 EEMGDYRCSPDTLSFNNLIEQLCNNGMLAEAEMLYGTMGEKGVNPDEFT 427

Query: 69   128
           
Sbjct: 439  427

Query: 129  156
           
Sbjct: 499  427

[Close]

BLAST of CU127334 vs. TrEMBL
Match: E5GB98_CUCME (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2


Query: 131 GSKPGRVYYGLLMDSCFKKNRADDAAAYFRKMVDSGLRP 190
           G  P    YGLLM SCF+KNRADDAAAYFRKMVDSGLRP
Sbjct: 420 GVNPDEFTYGLLMHSCFQKNRADDAAAYFRKMVDSGLRP 458

Query: 191  248
           
Sbjct: 480  458

HSP 2 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFTMV 71
           KMGDYRC PDTLSFNNLIEQLC NGML+EAE LYG M DKGV PDEFT V
Sbjct: 379 KMGDYRCSPDTLSFNNLIEQLCKNGMLSEAEELYGEMSDKGVYPDEFTYV 428

Query: 72   131
           
Sbjct: 439  428

Query: 132  162
           
Sbjct: 499  428

[Close]

BLAST of CU127334 vs. TrEMBL
Match: M5X3R7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002582mg PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-05
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 2


Query: 131 GSKPGRVYYGLLMDSCFKKNRADDAAAYFRKMVDSGLRP 190
           G  P    Y LLMD+CF++NRADDAA YFRKMVD+ LRP
Sbjct: 419 GVYPDEFTYVLLMDTCFEENRADDAAEYFRKMVDAKLRP 457

Query: 191  248
           
Sbjct: 479  457

HSP 2 Score: 89.7 bits (221), Expect = 1.7e-15
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 71
           KMG+YRC PDTLSFNNLI+QLC NGMLAEAE LYG M DKGVNPDE+T
Sbjct: 348 KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT 395

Query: 72   131
           
Sbjct: 408  395

Query: 132  156
           
Sbjct: 468  395

[Close]

BLAST of CU127334 vs. TrEMBL
Match: V4TWN7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019365mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 2


Query: 131 GSKPGRVYYGLLMDSCFKKNRADDAAAYFRKMVDSGLRP 190
           G  P    YGLLMD+CF+ NR DD A YFRKMVDSGLRP
Sbjct: 388 GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 426

Query: 191  248
           
Sbjct: 448  426

HSP 2 Score: 89.7 bits (221), Expect = 1.7e-15
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 71
           KMG+YRC PDTLSFNNLI+QLC NGMLAEAE LYG M DKGVNPDE+T
Sbjct: 149 KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT 196

Query: 72   131
           
Sbjct: 209  196

Query: 132  156
           
Sbjct: 269  196

[Close]

BLAST of CU127334 vs. NCBI nr
Match: gi|449456969|ref|XP_004146221.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49240 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3


Query: 9   EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 68
           EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT
Sbjct: 379 EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 427

Query: 69   128
           
Sbjct: 439  427

Query: 129  156
           
Sbjct: 499  427

[Close]

BLAST of CU127334 vs. NCBI nr
Match: gi|659133624|ref|XP_008466825.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49240 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3


Query: 9   EKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFT 68
           E+MGDYRC PDTLSFNNLIEQLCNNGMLAEAEMLYGTM +KGVNPDEFT
Sbjct: 379 EEMGDYRCSPDTLSFNNLIEQLCNNGMLAEAEMLYGTMGEKGVNPDEFT 427

Query: 69   128
           
Sbjct: 439  427

Query: 129  156
           
Sbjct: 499  427

[Close]

BLAST of CU127334 vs. NCBI nr
Match: gi|694447816|ref|XP_009349953.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Pyrus x bretschneideri])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFTMV 71
           KMGDYRC PD LSFNNLIEQLC NGML+EAE LYG M DKGVNPDEFT V
Sbjct: 377 KMGDYRCSPDALSFNNLIEQLCKNGMLSEAEELYGEMPDKGVNPDEFTYV 426

Query: 72   131
           
Sbjct: 437  426

Query: 132  162
           
Sbjct: 497  426

[Close]

BLAST of CU127334 vs. NCBI nr
Match: gi|1009123239|ref|XP_015878436.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49240 [Ziziphus jujuba])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFTMV 71
           KMGDYRC PD LSFNNLIEQLCNNG+L EAE LYG MD KGVNPDE+T V
Sbjct: 382 KMGDYRCSPDALSFNNLIEQLCNNGLLTEAEELYGEMDGKGVNPDEYTFV 431

Query: 72   131
           
Sbjct: 442  431

Query: 132  162
           
Sbjct: 502  431

[Close]

BLAST of CU127334 vs. NCBI nr
Match: gi|694321736|ref|XP_009352022.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Pyrus x bretschneideri])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 3


Query: 12  KMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDDKGVNPDEFTMV 71
           KMGDYRC PD LSFNNLIEQLC NGML+EAE LYG M DKGVNPDEFT V
Sbjct: 377 KMGDYRCSPDALSFNNLIEQLCKNGMLSEAEELYGEMPDKGVNPDEFTYV 426

Query: 72   131
           
Sbjct: 437  426

Query: 132  162
           
Sbjct: 497  426

The following BLAST results are available for this feature:

BLAST of CU127334 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP273_ARATH	1.8e-13	66.67	Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN...	[more]

BLAST of CU127334 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7B2_CUCSA	2.8e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239860 PE=4 SV=1	[more]
A0A0A0L7B2_CUCSA	1.1e-09	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239860 PE=4 SV=1	[more]
E5GB98_CUCME	2.1e-08	79.49	Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo PE=4 SV=...	[more]
M5X3R7_PRUPE	2.8e-05	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002582mg PE=4 SV=1	[more]
V4TWN7_9ROSI	1.1e-06	69.23	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019365mg PE=4 SV=1	[more]

BLAST of CU127334 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456969\|ref\|XP_004146221.1\|	6.1e-22	100.00	PREDICTED: pentatricopeptide repeat-containing protein At3g49240 [Cucumis sativu...	[more]
gi\|659133624\|ref\|XP_008466825.1\|	4.9e-19	91.84	PREDICTED: pentatricopeptide repeat-containing protein At3g49240 [Cucumis melo]	[more]
gi\|694447816\|ref\|XP_009349953.1\|	1.7e-16	84.00	PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Pyrus x b...	[more]
gi\|1009123239\|ref\|XP_015878436.1\|	1.7e-16	82.00	PREDICTED: pentatricopeptide repeat-containing protein At3g49240 [Ziziphus jujub...	[more]
gi\|694321736\|ref\|XP_009352022.1\|	1.7e-16	84.00	PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Pyrus x b...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G239860	Csa3G239860	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02M4IHC	FKNP3UI02M4IHC	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 13..61 score: 7.5
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 17..50 score: 6.6E-7coord: 53..83 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 49..83 score: 11.148coord: 14..48 score: 11
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 4..83 score: 5.3
None	No IPR available	PANTHER	PTHR24015:SF237	SUBFAMILY NOT NAMED	coord: 4..83 score: 5.3