CU126637 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU126637
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 375930 .. 376646 (+)
Sequence length	229

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGTGCACTTTTGGCCTTGTCTTCATCAACAATGGGAAGAAGACCTGAAGCTCTCGCATACCATTGTCCAGCCAACTGATCAGCTTGAATGGATGAACTTGAACTCCCGCCACTACTGTCATAGTTGAAGTAAGAACCATTCCACAATTTCTCATAGGCACGTTTTGCCTTCTGAAATTTGAACCAAAAATAGTGCTCAGCATCCTTTTCATCGGCTACACGAGCCAGGG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU126637 vs. TrEMBL
Match: D7TGQ9_VITVI (Non-lysosomal glucosylceramidase OS=Vitis vinifera GN=VIT_12s0035g01220 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-23
Identity = 55/75 (73.33%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LARV  +K +E YFWFKFQKAK  Y+KLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 706 LARVVGDKGSEDYFWFKFQKAKGVYQKLWNGSYFNYDDSDGSSSSSIQADQLAGQWYARA 765

Query: 63  SGLLPIVDEDKAKSA 122
            GL PIVDEDKAKSA
Sbjct: 766 CGLSPIVDEDKAKSA 780

Query: 123  182
           
Sbjct: 826  780

Query: 183  228
           
Sbjct: 886  780

[Close]

BLAST of CU126637 vs. TrEMBL
Match: V4T5D4_9ROSI (Non-lysosomal glucosylceramidase OS=Citrus clementina GN=CICLE_v10000199mg PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-23
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LAR   ++ +E YFWFKFQKAK  YEKLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 681 LAREVGDRGSEDYFWFKFQKAKVVYEKLWNGSYFNYDNSGSSQSSSIQADQLAGQWYARA 740

Query: 63  SGLLPIVDEDKAKSA 122
            GLLPIVDEDKA+SA
Sbjct: 741 CGLLPIVDEDKARSA 755

Query: 123  182
           
Sbjct: 801  755

Query: 183  228
           
Sbjct: 861  755

[Close]

BLAST of CU126637 vs. TrEMBL
Match: M1CBK2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402024877 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LAR   +K +E YFWFKFQKAK  Y+KLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 369 LAREVGDKGSEDYFWFKFQKAKEVYQKLWNGSYFNYDNSGSAVSSSIQADQLAGQWYARA 428

Query: 63  SGLLPIVDEDKAKSA 122
            GLLPIVDE+KAK+A
Sbjct: 429 CGLLPIVDEEKAKTA 443

Query: 123  182
           
Sbjct: 489  443

Query: 183  228
           
Sbjct: 549  443

[Close]

BLAST of CU126637 vs. TrEMBL
Match: A0A0V0IXZ3_SOLCH (Non-lysosomal glucosylceramidase OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LAR   +K +E YFWFKFQKAK  Y+KLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 701 LAREVGDKGSEDYFWFKFQKAKEVYQKLWNGSYFNYDNSGSAVSSSIQADQLAGQWYARA 760

Query: 63  SGLLPIVDEDKAKSA 122
            GLLPIVDE+KAK+A
Sbjct: 761 CGLLPIVDEEKAKTA 775

Query: 123  182
           
Sbjct: 821  775

Query: 183  228
           
Sbjct: 881  775

[Close]

BLAST of CU126637 vs. TrEMBL
Match: K4B1P9_SOLLC (Non-lysosomal glucosylceramidase OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LAR   +K +E YFWFKFQKAK  Y+KLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 711 LAREVGDKGSEDYFWFKFQKAKEVYQKLWNGSYFNYDNSGSAVSSSIQADQLAGQWYARA 770

Query: 63  SGLLPIVDEDKAKSA 122
            GLLPIVDE+KAK+A
Sbjct: 771 CGLLPIVDEEKAKTA 785

Query: 123  182
           
Sbjct: 831  785

Query: 183  228
           
Sbjct: 891  785

[Close]

BLAST of CU126637 vs. NCBI nr
Match: gi|449463809|ref|XP_004149624.1| (PREDICTED: non-lysosomal glucosylceramidase [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 66/75 (88.00%), Postives = 66/75 (88.00%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 710 LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDSSGGSSSSSIQADQLAGQWYARA 769

Query: 63  SGLLPIVDEDKAKSA 122
           SGLLPIVDEDKAKSA
Sbjct: 770 SGLLPIVDEDKAKSA 784

Query: 123  182
           
Sbjct: 830  784

Query: 183  228
           
Sbjct: 890  784

[Close]

BLAST of CU126637 vs. NCBI nr
Match: gi|659129614|ref|XP_008464754.1| (PREDICTED: non-lysosomal glucosylceramidase-like isoform X2 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-29
Identity = 65/75 (86.67%), Postives = 65/75 (86.67%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LARV DEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 628 LARVVDEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDSSGGSSSSSIQADQLAGQWYARA 687

Query: 63  SGLLPIVDEDKAKSA 122
           SGLLPIVDEDKAKSA
Sbjct: 688 SGLLPIVDEDKAKSA 702

Query: 123  182
           
Sbjct: 748  702

Query: 183  228
           
Sbjct: 808  702

[Close]

BLAST of CU126637 vs. NCBI nr
Match: gi|659129612|ref|XP_008464753.1| (PREDICTED: non-lysosomal glucosylceramidase-like isoform X1 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-29
Identity = 65/75 (86.67%), Postives = 65/75 (86.67%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LARV DEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 711 LARVVDEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDSSGGSSSSSIQADQLAGQWYARA 770

Query: 63  SGLLPIVDEDKAKSA 122
           SGLLPIVDEDKAKSA
Sbjct: 771 SGLLPIVDEDKAKSA 785

Query: 123  182
           
Sbjct: 831  785

Query: 183  228
           
Sbjct: 891  785

[Close]

BLAST of CU126637 vs. NCBI nr
Match: gi|731411381|ref|XP_010657960.1| (PREDICTED: non-lysosomal glucosylceramidase [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 8.7e-23
Identity = 55/75 (73.33%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LARV  +K +E YFWFKFQKAK  Y+KLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 706 LARVVGDKGSEDYFWFKFQKAKGVYQKLWNGSYFNYDDSDGSSSSSIQADQLAGQWYARA 765

Query: 63  SGLLPIVDEDKAKSA 122
            GL PIVDEDKAKSA
Sbjct: 766 CGLSPIVDEDKAKSA 780

Query: 123  182
           
Sbjct: 826  780

Query: 183  228
           
Sbjct: 886  780

[Close]

BLAST of CU126637 vs. NCBI nr
Match: gi|568833600|ref|XP_006470973.1| (PREDICTED: non-lysosomal glucosylceramidase [Citrus sinensis])

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-22
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = -3


Query: 3   LARVADEKDAEHYFWFKFQKAKRAYEKLWNGSYFNYDXXXXXXXXXIQADQLAGQWYARA 62
           LAR   ++ +E YFWFKFQKAK  YEKLWNGSYFNYD         IQADQLAGQWYARA
Sbjct: 709 LAREVGDRGSEDYFWFKFQKAKVVYEKLWNGSYFNYDNSGSSQSSSIQADQLAGQWYARA 768

Query: 63  SGLLPIVDEDKAKSA 122
            GLLPIVDEDKA+SA
Sbjct: 769 CGLLPIVDEDKARSA 783

Query: 123  182
           
Sbjct: 829  783

Query: 183  228
           
Sbjct: 889  783

The following BLAST results are available for this feature:

BLAST of CU126637 vs. TrEMBL


Match Name	E-value	Identity	Description
D7TGQ9_VITVI	2.7e-23	73.33	Non-lysosomal glucosylceramidase OS=Vitis vinifera GN=VIT_12s0035g01220 PE=3 SV=...	[more]
V4T5D4_9ROSI	7.9e-23	72.00	Non-lysosomal glucosylceramidase OS=Citrus clementina GN=CICLE_v10000199mg PE=3 ...	[more]
M1CBK2_SOLTU	1.0e-22	70.67	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402024877 PE=4 SV=1	[more]
A0A0V0IXZ3_SOLCH	1.0e-22	70.67	Non-lysosomal glucosylceramidase OS=Solanum chacoense PE=3 SV=1	[more]
K4B1P9_SOLLC	1.0e-22	70.67	Non-lysosomal glucosylceramidase OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of CU126637 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463809\|ref\|XP_004149624.1\|	1.6e-29	88.00	PREDICTED: non-lysosomal glucosylceramidase [Cucumis sativus]	[more]
gi\|659129614\|ref\|XP_008464754.1\|	4.8e-29	86.67	PREDICTED: non-lysosomal glucosylceramidase-like isoform X2 [Cucumis melo]	[more]
gi\|659129612\|ref\|XP_008464753.1\|	4.8e-29	86.67	PREDICTED: non-lysosomal glucosylceramidase-like isoform X1 [Cucumis melo]	[more]
gi\|731411381\|ref\|XP_010657960.1\|	8.7e-23	73.33	PREDICTED: non-lysosomal glucosylceramidase [Vitis vinifera]	[more]
gi\|568833600\|ref\|XP_006470973.1\|	2.5e-22	72.00	PREDICTED: non-lysosomal glucosylceramidase [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006775	GH116_catalytic

Vocabulary: **Molecular Function**
Term	Definition
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G011660	Csa5G011660	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LUEIV	FKNP3UI02LUEIV	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006775	Glycosyl-hydrolase family 116, catalytic region	PFAM	PF04685	DUF608	coord: 2..77 score: 1.3
None	No IPR available	PANTHER	PTHR12654	BILE ACID BETA-GLUCOSIDASE-RELATED	coord: 2..77 score: 3.4
None	No IPR available	PANTHER	PTHR12654:SF3	NON-LYSOSOMAL GLUCOSYLCERAMIDASE	coord: 2..77 score: 3.4