CU123233 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU123233
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 6604296 .. 6604550 (-)
Sequence length254
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CCACCACTGGCCATTGGTATTAGACTGACTGAAAAGACCTTCAGAGTCTAGATTACTCCAATTTGGTGTTGATATCAGGGAACCTTGAGAAGATTCCCTGAGCTGGGGATCCTCTAATCCAATATAGGCTTCCTTTACGCCACTACCGTAGTTGGAAAGAACCCCTAATTCATGTTCTGATTTCTCTTCAGCTGACAAACAAGGTTTTACTTCAGACTCGTACTTAGTTCTGTGGTCAATTTCAGACTTGCCAT
Library
Library categoryESTs
fruit (8DPP) library1
Homology
[Close]
BLAST of CU123233 vs. TrEMBL
Match: A0A0A0L317_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119240 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 9.4e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLEDPQLRESSQGSLI 60
           GKSEIDHRTKYESEVKPCLSAEEKSEHEL VLSNYGSGVKEAYIGLEDPQLRESSQGSLI
Sbjct: 143 GKSEIDHRTKYESEVKPCLSAEEKSEHELEVLSNYGSGVKEAYIGLEDPQLRESSQGSLI 202

Query: 61  STPNWSNLDSEGLFSQSNTNGQWW 120
           STPNWSNLDSEGLFSQSNTNGQWW
Sbjct: 203 STPNWSNLDSEGLFSQSNTNGQWW 226

Query: 121  180
           
Sbjct: 263  226

Query: 181  240
           
Sbjct: 323  226

Query: 241  253
           
Sbjct: 383  226

[Close]
BLAST of CU123233 vs. TrEMBL
Match: B9I924_POPTR (Homeobox leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0014s09860g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-10
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLED-PQLR---ESSQ 60
           G+SE    TK ESE KP LS E+  EH LGVLS+  S +K  Y  LE+ P L    E ++
Sbjct: 148 GESENGDATKGESETKPRLSIEQP-EHGLGVLSDEDSSIKVDYFELEEEPNLMSMVEPAE 207

Query: 61  GSLISTPNWSNLDSEGLFSQSNTNGQWW 120
           GSL S  +W ++DS+GLF QS++  QWW
Sbjct: 208 GSLTSQEDWGSIDSDGLFDQSSSGYQWW 234

Query: 121  180
           
Sbjct: 268  234

Query: 181  240
           
Sbjct: 328  234

Query: 241  253
           
Sbjct: 388  234

[Close]
BLAST of CU123233 vs. TrEMBL
Match: V4U1T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021877mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = -3 

Query: 1   KSEIDH----RTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGL--EDPQLR--- 60
           +SE+D+      K ESEVKP LSAE +    LGVLS+  S +K  Y GL  ++P L    
Sbjct: 156 ESELDNGDRDTNKCESEVKPSLSAELR----LGVLSDDDSSIKTEYFGLHEDEPNLMTMV 215

Query: 61  ESSQGSLISTPNWSNLDSEGLFSQSNTNGQWW 120
           E ++ S+ S  +W N +S+GLF QS++  QWW
Sbjct: 216 EPAESSMTSPEDWGNFESDGLFDQSSSEYQWW 243

Query: 121  180
           
Sbjct: 276  243

Query: 181  240
           
Sbjct: 336  243

Query: 241  250
           
Sbjct: 396  243

[Close]
BLAST of CU123233 vs. TrEMBL
Match: A0A067HEZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025886mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = -3 

Query: 1   KSEIDH----RTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGL--EDPQLR--- 60
           +SE+D+      K ESEVKP LSAE +    LGVLS+  S +K  Y GL  ++P L    
Sbjct: 156 ESELDNGDRDTNKCESEVKPSLSAELR----LGVLSDDDSSIKTEYFGLHEDEPNLMTMV 215

Query: 61  ESSQGSLISTPNWSNLDSEGLFSQSNTNGQWW 120
           E ++ S+ S  +W N +S+GLF QS++  QWW
Sbjct: 216 EPAESSMTSPEDWGNFESDGLFDQSSSEYQWW 243

Query: 121  180
           
Sbjct: 276  243

Query: 181  240
           
Sbjct: 336  243

Query: 241  250
           
Sbjct: 396  243

[Close]
BLAST of CU123233 vs. TrEMBL
Match: A0A096YDU1_ROSHC (Homeobox-leucine zipper protein 1 OS=Rosa hybrid cultivar GN=HB1 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = -3 

Query: 1   DHRTKYESEVKPCLSAE-EKSEHELGVLSNYGSGVKEAYIGL-EDPQL---RESSQGSLI 60
           D  T+ ESE KP      EKSEH L V+S+  S +K  Y GL E+P L    ES+ GSL 
Sbjct: 155 DDATRSESEGKPNYQMSLEKSEHRLRVMSDDDSSIKAEYFGLEEEPNLVNFVESADGSLT 214

Query: 61  STPNWSNLDSE-GLFSQSNTNGQWW 120
           S  +W  L+S+ GLF QS ++ QWW
Sbjct: 215 SPEDWGRLNSDGGLFDQSTSDYQWW 239

Query: 121  180
           
Sbjct: 275  239

Query: 181  238
           
Sbjct: 335  239

[Close]
BLAST of CU123233 vs. NCBI nr
Match: gi|449432008|ref|XP_004133792.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLEDPQLRESSQGSLI 60
           GKSEIDHRTKYESEVKPCLSAEEKSEHEL VLSNYGSGVKEAYIGLEDPQLRESSQGSLI
Sbjct: 143 GKSEIDHRTKYESEVKPCLSAEEKSEHELEVLSNYGSGVKEAYIGLEDPQLRESSQGSLI 202

Query: 61  STPNWSNLDSEGLFSQSNTNGQWW 120
           STPNWSNLDSEGLFSQSNTNGQWW
Sbjct: 203 STPNWSNLDSEGLFSQSNTNGQWW 226

Query: 121  180
           
Sbjct: 263  226

Query: 181  240
           
Sbjct: 323  226

Query: 241  253
           
Sbjct: 383  226

[Close]
BLAST of CU123233 vs. NCBI nr
Match: gi|659074881|ref|XP_008437846.1| (PREDICTED: homeobox-leucine zipper protein ATHB-7 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-28
Identity = 71/84 (84.52%), Postives = 73/84 (86.90%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLEDPQLRESSQGSLI 60
           G SE D+RTKYESE KPC+SAEEKSEHEL VLS   SGVKEAYIGLEDPQLRE S   LI
Sbjct: 143 GTSENDNRTKYESEAKPCVSAEEKSEHELEVLS---SGVKEAYIGLEDPQLREPS---LI 202

Query: 61  STPNWSNLDSEGLFSQSNTNGQWW 120
           STPNWSNLDSEGLFSQSNTNGQWW
Sbjct: 203 STPNWSNLDSEGLFSQSNTNGQWW 220

Query: 121  180
           
Sbjct: 263  220

Query: 181  240
           
Sbjct: 323  220

Query: 241  253
           
Sbjct: 383  220

[Close]
BLAST of CU123233 vs. NCBI nr
Match: gi|743790427|ref|XP_011038888.1| (PREDICTED: homeobox-leucine zipper protein ATHB-7 [Populus euphratica])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLED-PQLR---ESSQ 60
           G+SE    TK ESE +P LS E+  EH LGVLS+  S +K  Y  LE+ P L    E ++
Sbjct: 148 GESENGDTTKGESETRPRLSIEQP-EHGLGVLSDEDSSIKADYFELEEEPNLMSMVEPAE 207

Query: 61  GSLISTPNWSNLDSEGLFSQSNTNGQWW 120
           GSL S  +W +LDS+GLF QS+++ QWW
Sbjct: 208 GSLTSQEDWGSLDSDGLFDQSSSDYQWW 234

Query: 121  180
           
Sbjct: 268  234

Query: 181  240
           
Sbjct: 328  234

Query: 241  253
           
Sbjct: 388  234

[Close]
BLAST of CU123233 vs. NCBI nr
Match: gi|224130632|ref|XP_002320889.1| (homeobox leucine zipper family protein [Populus trichocarpa])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLED-PQLR---ESSQ 60
           G+SE    TK ESE KP LS E+  EH LGVLS+  S +K  Y  LE+ P L    E ++
Sbjct: 148 GESENGDATKGESETKPRLSIEQP-EHGLGVLSDEDSSIKVDYFELEEEPNLMSMVEPAE 207

Query: 61  GSLISTPNWSNLDSEGLFSQSNTNGQWW 120
           GSL S  +W ++DS+GLF QS++  QWW
Sbjct: 208 GSLTSQEDWGSIDSDGLFDQSSSGYQWW 234

Query: 121  180
           
Sbjct: 268  234

Query: 181  240
           
Sbjct: 328  234

Query: 241  253
           
Sbjct: 388  234

[Close]
BLAST of CU123233 vs. NCBI nr
Match: gi|743827825|ref|XP_011023121.1| (PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Populus euphratica])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = -3 

Query: 1   GKSEIDHRTKYESEVKPCLSAEEKSEHELGVLSNYGSGVKEAYIGLEDP----QLRESSQ 60
           G+SE    T  ESE  P LS E + EH LGVLS+  S +K  Y  LE+      + E + 
Sbjct: 148 GRSENADTTMGESETNPRLSIE-RPEHGLGVLSDEDSSIKAEYFELEEEPNLISMVEPAD 207

Query: 61  GSLISTPNWSNLDSEGLFSQSNTNGQWW 120
           GSL S  +W +LDS+GLF QS+++ QWW
Sbjct: 208 GSLTSQEDWGSLDSDGLFDQSSSDYQWW 234

Query: 121  180
           
Sbjct: 268  234

Query: 181  240
           
Sbjct: 328  234

Query: 241  253
           
Sbjct: 388  234

The following BLAST results are available for this feature:
BLAST of CU123233 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L317_CUCSA9.4e-4198.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119240 PE=4 SV=1[more]
B9I924_POPTR1.0e-1048.86Homeobox leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0014s0986... [more]
V4U1T1_9ROSI2.1e-0843.48Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021877mg PE=4 SV=1[more]
A0A067HEZ9_CITSI2.1e-0843.48Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025886mg PE=4 SV=1[more]
A0A096YDU1_ROSHC1.0e-0747.06Homeobox-leucine zipper protein 1 OS=Rosa hybrid cultivar GN=HB1 PE=2 SV=1[more]
BLAST of CU123233 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432008|ref|XP_004133792.1|1.9e-3998.81PREDICTED: homeobox-leucine zipper protein ATHB-12 [Cucumis sativus][more]
gi|659074881|ref|XP_008437846.1|1.5e-2884.52PREDICTED: homeobox-leucine zipper protein ATHB-7 [Cucumis melo][more]
gi|743790427|ref|XP_011038888.1|1.6e-0948.86PREDICTED: homeobox-leucine zipper protein ATHB-7 [Populus euphratica][more]
gi|224130632|ref|XP_002320889.1|2.1e-0948.86homeobox leucine zipper family protein [Populus trichocarpa][more]
gi|743827825|ref|XP_011023121.1|1.8e-0845.45PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Populus euphratica][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G119240Csa3G119240gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02K9YYMFKNP3UI02K9YYMEST