CU122109 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU122109
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 2653207 .. 2656293 (+)
Sequence length	893

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGAGCATAATTTATATATACATATAATGGGATAGTATATATTTATAGTTTTAGTTGCTATGAAATTACACAATATTTATAGGCTAAAAATAAAATATATTTATAAGATAAAGATAAGTTCAAGCAAACTATAAGCTAAACTCACCATTCAAAACTAAATTTTCACAAAGAGCAACAATTTGAATTGTGTTTGGTTGGGGTTACTTCATGAATACTAATAATCTCTTTTCCGTTTGGAAAAGCAACAAGCTTTTCAAATTTTTTATGCAAATCCAATGTCTTTTGAGAGGCGATGGCGTGGATCCTACGAACCATTTCAAGAAATGCCTCTTCCACATTCAAAATTATCTTTGGCAGAAGTTTCCATGAAAAACAAGTTCTCCAACTCGGCCAAATGTCGCGCTTCTTCTTCTTGTACTTCTCGCGATTGATGTAAGTCGCATTTGTTTCCAACTAGAATGATCACCATTTCCGGATTTCCAAACTCTCTCAACTCTCGTAGCCACTTCTTTATGTTATCAAATGTAGCCACGCGAGTTATGTCGTAAACAAGTAATGCTCCTAATGCTCCCCGATAATAAGAACTTGTAATTGCCCTAAATCTTTCTTGGCCGGCGGTGTCCCAGATTTGGGTTTTGACGAGTTTATCGGCGACCTTAATATTCCGGTAAGCGAACTCGACACCGATCGTAGGTCTAGAGTCGAATCGGAATTCATTTTTGGAGAAACGAGAGAGGAGATTGGATTTTCCAACGCCGGAATCGCCCGTAAGAACCGCCTTGAAGAGATAATCACAGTCTTCGTCCAACGAATCCGCCATTTCTCTGTTTCTCTGCTCTGCCAAAACAGAGAGCCTTTCTTAAACCTTTAAAAACTAATAATAACCCCCCCGG

Library


Library category	ESTs
published gene (cucumber)	1
fruit (8DPP) library	15

Homology

[Close]

BLAST of CU122109 vs. Swiss-Prot
Match: RAA6A_ARATH (Ras-related protein RABA6a OS=Arabidopsis thaliana GN=RABA6A PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.3e-66
Identity = 121/157 (77.07%), Postives = 137/157 (87.26%), Query Frame = -2


Query: 344 DSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVK 403
           D+ +E+CDYLFKAVL GDS VGKSNLLSRFSK+EFRFDS+PTIGVEFAYRN+ V DK++K
Sbjct: 4   DTYEEECDYLFKAVLIGDSAVGKSNLLSRFSKDEFRFDSKPTIGVEFAYRNVHVGDKIIK 63

Query: 404 TQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIIL 463
            QIWDTAGQERFRAITSSYYRGALGALL+YDITR  TFDNIKKWL ELR+F NPE V++L
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVL 123

Query: 464 VGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           VGNK DL QSREV+E+E + LAE E L+F+ETSA +N
Sbjct: 124 VGNKSDLRQSREVEEDEGKTLAESEGLYFLETSALEN 160

Query: 524  583
           
Sbjct: 184  160

Query: 584  643
           
Sbjct: 244  160

Query: 644  703
           
Sbjct: 304  160

Query: 704  763
           
Sbjct: 364  160

Query: 764  815
           
Sbjct: 424  160

HSP 2 Score: 47.4 bits (111), Expect = 3.2e-04
Identity = 28/71 (39.44%), Postives = 36/71 (50.70%), Query Frame = -3


Query: 172 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKL----------VAFPNGKEIISIHEVTPT 231
           +NVEEAFL M+ RIH + +Q+    +K                  P GKEI++IHEVT T
Sbjct: 161 VNVEEAFLVMIGRIHEVVTQRIASENKSNGAATPHINGNGNGTVLPVGKEIVNIHEVTAT 220

Query: 232 K----HNSNCC 291
           +     +SNCC
Sbjct: 221 QPLLSSSSNCC 231

Query: 292  343
           
Sbjct: 281  231

[Close]

BLAST of CU122109 vs. Swiss-Prot
Match: RAA6B_ARATH (Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2 SV=2)

HSP 1 Score: 243.4 bits (620), Expect = 3.1e-63
Identity = 117/157 (74.52%), Postives = 134/157 (85.35%), Query Frame = -2


Query: 344 DSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVK 403
           +S DE+CDYLFKAVL GDS VGKSNLLSRFS++EFR DS+PTIGV+FAYRN++V DK +K
Sbjct: 4   ESYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIK 63

Query: 404 TQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIIL 463
            QIWDTAGQERFRAITSSYYRGALGALL+YDITR  TF NI+KWL ELR F +PE V++L
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGFSSPETVVVL 123

Query: 464 VGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           VGNK DL QSREV+EEE + LAE E L+F+ETSA +N
Sbjct: 124 VGNKSDLGQSREVEEEEGKTLAESEGLYFLETSALEN 160

Query: 524  583
           
Sbjct: 184  160

Query: 584  643
           
Sbjct: 244  160

Query: 644  703
           
Sbjct: 304  160

Query: 704  763
           
Sbjct: 364  160

Query: 764  815
           
Sbjct: 424  160

HSP 2 Score: 47.8 bits (112), Expect = 2.5e-04
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = -3


Query: 172 NVEEAFLEMVRRIHAIASQKTL-------DLHKKFEKLVAFPNGKEIISIHEVTPTK--- 231
           NVEEAFL M+ RIH + +QK +       D + +    V  P GKEI++IHEVT T+   
Sbjct: 162 NVEEAFLSMIGRIHEVLTQKIVLDNRLNGDGNNESNGAVV-PPGKEIVNIHEVTATRPLS 221

Query: 232 -HNSNCC 291
              SNCC
Sbjct: 222 TSLSNCC 227

Query: 292  340
           
Sbjct: 282  227

[Close]

BLAST of CU122109 vs. Swiss-Prot
Match: RAA1H_ARATH (Ras-related protein RABA1h OS=Arabidopsis thaliana GN=RABA1H PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.9e-54
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = -2


Query: 353 DEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQI 412
           ++D DYLFK VLTGDSGVGKSNLLSRF++N+F  DSR TIGVEFA R+I+V DK+VK QI
Sbjct: 7   EDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDKIVKAQI 66

Query: 413 WDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGN 472
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR  TF+N+++WL+ELR+  +   VI+LVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTVIMLVGN 126

Query: 473 KCDLHQSREVQEEEARHLAELENLFFMETSA 532
           K DL+  R +  EE +  AE EN FFMETSA
Sbjct: 127 KADLNHLRAISTEEVKDFAERENTFFMETSA 157

Query: 533  592
           
Sbjct: 187  157

Query: 593  652
           
Sbjct: 247  157

Query: 653  712
           
Sbjct: 307  157

Query: 713  772
           
Sbjct: 367  157

Query: 773  806
           
Sbjct: 427  157

HSP 2 Score: 32.0 bits (71), Expect = 1.4e+01
Identity = 18/59 (30.51%), Postives = 28/59 (47.46%), Query Frame = -3


Query: 169 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEI-ISIHEVTPTKHNSNCCS 228
           +NVE AF E++ +I+ + S+K LD     +   A P G+ I +   +       S CC+
Sbjct: 161 INVENAFTEVLTQIYRVVSKKALDAGD--DPTTALPKGQMINVGSRDDVSAVKKSGCCA 217

Query: 229  288
           
Sbjct: 221  217

Query: 289  343
           
Sbjct: 281  217

[Close]

BLAST of CU122109 vs. Swiss-Prot
Match: RAA1I_ARATH (Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-53
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = -2


Query: 353 DEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQI 412
           ++D DYLFK VLTGDSGVGKSNLLSRF++N+F  DSR TIGVEFA R+I+  DK+VK QI
Sbjct: 7   EDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQI 66

Query: 413 WDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGN 472
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR  TF+N+++WL+ELR+  +  +VI+LVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGN 126

Query: 473 KCDLHQSREVQEEEARHLAELENLFFMETSA 532
           K DL   R +  EEA+  AE EN FFMETSA
Sbjct: 127 KADLRHLRAISTEEAKAFAERENTFFMETSA 157

Query: 533  592
           
Sbjct: 187  157

Query: 593  652
           
Sbjct: 247  157

Query: 653  712
           
Sbjct: 307  157

Query: 713  772
           
Sbjct: 367  157

Query: 773  806
           
Sbjct: 427  157

[Close]

BLAST of CU122109 vs. Swiss-Prot
Match: RAA1E_ARATH (Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-53
Identity = 101/153 (66.01%), Postives = 124/153 (81.05%), Query Frame = -2


Query: 347 DEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQI 406
           D+D DYLFK VL GDSGVGKSNLLSRF++NEF  +S+ TIGVEFA R++ V +K++K Q+
Sbjct: 7   DDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEKIIKAQL 66

Query: 407 WDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGN 466
           WDTAGQER+RAITS+YYRGA+GALLVYDITR  TF+N+++WL+ELR+  +  +VI+LVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGN 126

Query: 467 KCDLHQSREVQEEEARHLAELENLFFMETSAKD 526
           K DL   R V  EEAR  +E EN+FFMETSA D
Sbjct: 127 KADLRHLRAVPTEEARSFSERENMFFMETSALD 159

Query: 527  586
           
Sbjct: 187  159

Query: 587  646
           
Sbjct: 247  159

Query: 647  706
           
Sbjct: 307  159

Query: 707  766
           
Sbjct: 367  159

Query: 767  806
           
Sbjct: 427  159

[Close]

BLAST of CU122109 vs. TrEMBL
Match: A0A0A0LS89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025010 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.8e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL
Sbjct: 1   MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 60

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI
Sbjct: 61  VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 120

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN
Sbjct: 121 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 159

Query: 524  583
           
Sbjct: 181  159

Query: 584  643
           
Sbjct: 241  159

Query: 644  703
           
Sbjct: 301  159

Query: 704  763
           
Sbjct: 361  159

Query: 764  821
           
Sbjct: 421  159

[Close]

BLAST of CU122109 vs. TrEMBL
Match: A0A0A0LS89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025010 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -3


Query: 166 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKHNSNCCSL 225
           LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKHNSNCCSL
Sbjct: 160 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKHNSNCCSL 218

Query: 226  285
           
Sbjct: 220  218

Query: 286  343
           
Sbjct: 280  218

HSP 2 Score: 288.5 bits (737), Expect = 9.3e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = -2


Query: 344 VLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFR 403
           VLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFR
Sbjct: 1   VLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFR 60

Query: 404 AITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREV 463
           AITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREV
Sbjct: 61  AITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREV 120

Query: 464 QEEEARHLAELENLFFMETSAKDN 523
           QEEEARHLAELENLFFMETSAKDN
Sbjct: 121 QEEEARHLAELENLFFMETSAKDN 144

Query: 524  583
           
Sbjct: 181  144

Query: 584  643
           
Sbjct: 241  144

Query: 644  703
           
Sbjct: 301  144

Query: 704  763
           
Sbjct: 361  144

Query: 764  776
           
Sbjct: 421  144

[Close]

BLAST of CU122109 vs. TrEMBL
Match: Q6ZYK8_CUCSA (Putative Ras-related GTP-binding protein (Fragment) OS=Cucumis sativus GN=rasgbp PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = -3


Query: 166 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKHNSNCCSL 225
           LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTK NSNCCSL
Sbjct: 145 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKPNSNCCSL 203

Query: 226  285
           
Sbjct: 205  203

Query: 286  343
           
Sbjct: 265  203

HSP 2 Score: 265.0 bits (676), Expect = 1.1e-67
Identity = 128/159 (80.50%), Postives = 142/159 (89.31%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           M DS DE+CDYLFKAVL GDS VGKSNLLSRFS++EFR DS+PTIGVEFAYRNI+VADKL
Sbjct: 1   MGDSYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIRVADKL 60

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           +K QIWDTAGQERFRAITSSYYRGALGALLVYDITR ATFDN+KKWL ELRE+GNPEMV+
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFDNVKKWLTELREYGNPEMVV 120

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           +L GNKCDL  +REV EEE ++LAE E L FMETSA +N
Sbjct: 121 VLAGNKCDLSHTREVGEEEGKNLAETEGLCFMETSALEN 159

Query: 524  583
           
Sbjct: 181  159

Query: 584  643
           
Sbjct: 241  159

Query: 644  703
           
Sbjct: 301  159

Query: 704  763
           
Sbjct: 361  159

Query: 764  821
           
Sbjct: 421  159

[Close]

BLAST of CU122109 vs. TrEMBL
Match: B9T2M0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0170930 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-03
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = -3


Query: 205 LNVEEAFLEMVRRIHAIASQKTLDLHKK-----FEKLVAFPNGKEIISIHE 264
           LNVEEAFLEM+ +IHAI SQK+L++  K       K VA P GKE++ I E
Sbjct: 160 LNVEEAFLEMITKIHAITSQKSLEVRLKDANNITSKTVALPVGKEVLIIDE 210

Query: 265  324
           
Sbjct: 220  210

Query: 325  343
           
Sbjct: 280  210

HSP 2 Score: 260.0 bits (663), Expect = 3.5e-66
Identity = 125/159 (78.62%), Postives = 140/159 (88.05%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           M DS DE+CDYLFKAVLTGDS VGKSNLLSRF++ EF+ DS+PTIGVEFAYRN+KVADKL
Sbjct: 1   MVDSFDEECDYLFKAVLTGDSAVGKSNLLSRFARKEFQLDSKPTIGVEFAYRNVKVADKL 60

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           +K QIWDTAGQERFRAITSSYYRGALGALLVYDITR  TF+N+KKWLRELR+FGNP+MV+
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRVTFENVKKWLRELRDFGNPDMVV 120

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           +LVGNK DL  SREV  EE +  AE ENL FMETSA +N
Sbjct: 121 VLVGNKSDLSSSREVDLEEGKDFAEAENLCFMETSALEN 159

Query: 524  583
           
Sbjct: 181  159

Query: 584  643
           
Sbjct: 241  159

Query: 644  703
           
Sbjct: 301  159

Query: 704  763
           
Sbjct: 361  159

Query: 764  821
           
Sbjct: 421  159

[Close]

BLAST of CU122109 vs. TrEMBL
Match: A0A059A5G5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02267 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = -3


Query: 166 LNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKHNSNCCSL 225
           LNVEEAFLEM+ RIH I SQK+L+  K  E   +    K++I I EVT TK  S CCS+
Sbjct: 160 LNVEEAFLEMITRIHEITSQKSLEA-KNNEITSSLHGPKQVIQIDEVTATK-KSYCCSI 216

Query: 226  285
           
Sbjct: 220  216

Query: 286  343
           
Sbjct: 280  216

HSP 2 Score: 258.8 bits (660), Expect = 7.9e-66
Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = -2


Query: 344 ADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLV 403
           ADS D++CDYLFKAVL GDS VGKSNLLSRFS++EFR DS+PTIGVEFAYRNIKV DKL+
Sbjct: 3   ADSFDDECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIKVGDKLI 62

Query: 404 KTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVII 463
           K QIWDTAGQERFRAITSSYYRGALGALLVYDITR ATF+N+KKWLRELR+FG P+MVI+
Sbjct: 63  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENLKKWLRELRDFGKPDMVIV 122

Query: 464 LVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           LVGNK DL  SREV EEE + LAE E L FMETSA +N
Sbjct: 123 LVGNKSDLGHSREVDEEEGKTLAETEGLCFMETSALEN 160

Query: 524  583
           
Sbjct: 183  160

Query: 584  643
           
Sbjct: 243  160

Query: 644  703
           
Sbjct: 303  160

Query: 704  763
           
Sbjct: 363  160

Query: 764  818
           
Sbjct: 423  160

[Close]

BLAST of CU122109 vs. NCBI nr
Match: gi|449439127|ref|XP_004137339.1| (PREDICTED: ras-related protein RABA6a-like [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 2.2e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL
Sbjct: 1   MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 60

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI
Sbjct: 61  VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 120

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN
Sbjct: 121 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 159

Query: 524  583
           
Sbjct: 181  159

Query: 584  643
           
Sbjct: 241  159

Query: 644  703
           
Sbjct: 301  159

Query: 704  763
           
Sbjct: 361  159

Query: 764  821
           
Sbjct: 421  159

[Close]

BLAST of CU122109 vs. NCBI nr
Match: gi|659106943|ref|XP_008453474.1| (PREDICTED: ras-related protein RABA6a-like [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 7.0e-84
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           MADSLDE+CDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL
Sbjct: 1   MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 60

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNP+MVI
Sbjct: 61  VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPDMVI 120

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           ILVGNKCDLHQSREVQEEEARHLAELENL FMETSAKDN
Sbjct: 121 ILVGNKCDLHQSREVQEEEARHLAELENLLFMETSAKDN 159

Query: 524  583
           
Sbjct: 181  159

Query: 584  643
           
Sbjct: 241  159

Query: 644  703
           
Sbjct: 301  159

Query: 704  763
           
Sbjct: 361  159

Query: 764  821
           
Sbjct: 421  159

[Close]

BLAST of CU122109 vs. NCBI nr
Match: gi|46193751|emb|CAG25544.1| (putative Ras-related GTP-binding protein [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 7.0e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = -2


Query: 344 VLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFR 403
           VLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFR
Sbjct: 1   VLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFR 60

Query: 404 AITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREV 463
           AITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREV
Sbjct: 61  AITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREV 120

Query: 464 QEEEARHLAELENLFFMETSAKDN 523
           QEEEARHLAELENLFFMETSAKDN
Sbjct: 121 QEEEARHLAELENLFFMETSAKDN 144

Query: 524  583
           
Sbjct: 181  144

Query: 584  643
           
Sbjct: 241  144

Query: 644  703
           
Sbjct: 301  144

Query: 704  763
           
Sbjct: 361  144

Query: 764  776
           
Sbjct: 421  144

[Close]

BLAST of CU122109 vs. NCBI nr
Match: gi|223527788|gb|EEF29888.1| (protein with unknown function [Ricinus communis])

HSP 1 Score: 269.6 bits (688), Expect = 6.4e-69
Identity = 128/159 (80.50%), Postives = 142/159 (89.31%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           M DS DE+CDYLFKAVL GDS VGKSNLLSRFS++EFR DS+PTIGVEFAYRNI+VADKL
Sbjct: 1   MGDSYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIRVADKL 60

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           +K QIWDTAGQERFRAITSSYYRGALGALLVYDITR ATFDN+KKWL ELRE+GNPEMV+
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFDNVKKWLTELREYGNPEMVV 120

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           +L GNKCDL  +REV EEE ++LAE E L FMETSA +N
Sbjct: 121 VLAGNKCDLSHTREVGEEEGKNLAETEGLCFMETSALEN 159

Query: 524  583
           
Sbjct: 181  159

Query: 584  643
           
Sbjct: 241  159

Query: 644  703
           
Sbjct: 301  159

Query: 704  763
           
Sbjct: 361  159

Query: 764  821
           
Sbjct: 421  159

[Close]

BLAST of CU122109 vs. NCBI nr
Match: gi|1000940656|ref|XP_015582916.1| (PREDICTED: ras-related protein RABA6b [Ricinus communis])

HSP 1 Score: 269.6 bits (688), Expect = 6.4e-69
Identity = 128/159 (80.50%), Postives = 142/159 (89.31%), Query Frame = -2


Query: 344 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKL 403
           M DS DE+CDYLFKAVL GDS VGKSNLLSRFS++EFR DS+PTIGVEFAYRNI+VADKL
Sbjct: 3   MGDSYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIRVADKL 62

Query: 404 VKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVI 463
           +K QIWDTAGQERFRAITSSYYRGALGALLVYDITR ATFDN+KKWL ELRE+GNPEMV+
Sbjct: 63  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFDNVKKWLTELREYGNPEMVV 122

Query: 464 ILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDN 523
           +L GNKCDL  +REV EEE ++LAE E L FMETSA +N
Sbjct: 123 VLAGNKCDLSHTREVGEEEGKNLAETEGLCFMETSALEN 161

Query: 524  583
           
Sbjct: 183  161

Query: 584  643
           
Sbjct: 243  161

Query: 644  703
           
Sbjct: 303  161

Query: 704  763
           
Sbjct: 363  161

Query: 764  821
           
Sbjct: 423  161

The following BLAST results are available for this feature:

BLAST of CU122109 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAA6A_ARATH	2.3e-66	77.07	Ras-related protein RABA6a OS=Arabidopsis thaliana GN=RABA6A PE=2 SV=1	[more]
RAA6B_ARATH	3.1e-63	74.52	Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2 SV=2	[more]
RAA1H_ARATH	9.9e-54	67.55	Ras-related protein RABA1h OS=Arabidopsis thaliana GN=RABA1H PE=2 SV=1	[more]
RAA1I_ARATH	1.3e-53	67.55	Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2 SV=1	[more]
RAA1E_ARATH	2.9e-53	66.01	Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2 SV=1	[more]

BLAST of CU122109 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS89_CUCSA	3.8e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025010 PE=4 SV=1	[more]
A0A0A0LS89_CUCSA	1.1e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025010 PE=4 SV=1	[more]
Q6ZYK8_CUCSA	1.7e-23	98.31	Putative Ras-related GTP-binding protein (Fragment) OS=Cucumis sativus GN=rasgbp...	[more]
B9T2M0_RICCO	1.9e-03	54.90	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0170930 PE=4 SV=1	[more]
A0A059A5G5_EUCGR	2.3e-04	54.24	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02267 PE=4 SV=1	[more]

BLAST of CU122109 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439127\|ref\|XP_004137339.1\|	2.2e-85	100.00	PREDICTED: ras-related protein RABA6a-like [Cucumis sativus]	[more]
gi\|659106943\|ref\|XP_008453474.1\|	7.0e-84	98.11	PREDICTED: ras-related protein RABA6a-like [Cucumis melo]	[more]
gi\|46193751\|emb\|CAG25544.1\|	7.0e-76	100.00	putative Ras-related GTP-binding protein [Cucumis sativus]	[more]
gi\|223527788\|gb\|EEF29888.1\|	6.4e-69	80.50	protein with unknown function [Ricinus communis]	[more]
gi\|1000940656\|ref\|XP_015582916.1\|	6.4e-69	80.50	PREDICTED: ras-related protein RABA6b [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
molecular_function	GO:0005525	GTP binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025010	Csa1G025010	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
AJ634908	AJ634908	EST
FKNP3UI02KIBBO	FKNP3UI02KIBBO	EST
FKNP3UI02KNRN1	FKNP3UI02KNRN1	EST
FKNP3UI02KO39E	FKNP3UI02KO39E	EST
FKNP3UI02KYPM7	FKNP3UI02KYPM7	EST
FKNP3UI02L386N	FKNP3UI02L386N	EST
FKNP3UI02LBYE8	FKNP3UI02LBYE8	EST
FKNP3UI02LN521	FKNP3UI02LN521	EST
FKNP3UI02LOHLN	FKNP3UI02LOHLN	EST
FKNP3UI02LW68T	FKNP3UI02LW68T	EST
FKNP3UI02M3B3I	FKNP3UI02M3B3I	EST
FKNP3UI02M6LZH	FKNP3UI02M6LZH	EST
FKNP3UI02MBMUB	FKNP3UI02MBMUB	EST
FKNP3UI02MKFF8	FKNP3UI02MKFF8	EST
FKNP3UI02N641H	FKNP3UI02N641H	EST
FKNP3UI02NUJI3	FKNP3UI02NUJI3	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 14..161 score: 2.2
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 12..158 score: 3.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 5..160 score: 3.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..160 score: 5.04
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 151..167 score: 1.5E-32coord: 54..76 score: 1.5E-32coord: 116..129 score: 1.5E-32coord: 13..34 score: 1.5E-32coord: 36..52 score: 1.5
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..159 score: 8.4E
None	No IPR available	PANTHER	PTHR24073:SF486	RAS-RELATED PROTEIN RABA6A-RELATED	coord: 1..159 score: 8.4E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 10..165 score: 7.5
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 15..163 score: 1.
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 13..164 score: 2.7
None	No IPR available	PROFILE	PS51419	RAB	coord: 8..167 score: 30