CU121498 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU121498
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4430052 .. 4430244 (+)
Sequence length200
The following sequences are available for this feature:

transcribed_cluster sequence

AGTAATACTAAAATTTTGTTATATTTTTAGGAATTTGTATGTATGTAATATATCAATAATATGGTTCTTTGAAAAGCAAGACATAAACAATGCAAGCTATAGCAAAGAGAATGATAAAGATATCTAAAGTAAGAGCAGTGGAGGCTTGATCACTCAACTCCAAGTTTCTTCCTCCAAGCCTATCCACCATGTCTGGAGTT
Library categoryESTs
gynoecious flower library2
BLAST of CU121498 vs. Swiss-Prot
Match: NDHT_ARATH (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana GN=ndhT PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PDMVDRLGGRN+ELSDQA TALT DI I+LFA+ CI +V++FK+P
Sbjct: 203 PDMVDRLGGRNMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDP 247

Query: 122 181
           
Sbjct: 263 247

Query: 182 197
           
Sbjct: 323 247

BLAST of CU121498 vs. TrEMBL
Match: A0A0A0LT25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042670 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-16
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -2

Query: 62  TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP
Sbjct: 187 TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 232

Query: 122 181
           
Sbjct: 247 232

Query: 182 200
           
Sbjct: 307 232

BLAST of CU121498 vs. TrEMBL
Match: B9T8B6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0176710 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-13
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PDMVDRLGGRNLELSDQA +ALT+DIFI+LFAI CI+YVL FKEP
Sbjct: 20  PDMVDRLGGRNLELSDQAMSALTIDIFIVLFAIGCIIYVLYFKEP 64

Query: 122 181
           
Sbjct: 80  64

Query: 182 197
           
Sbjct: 140 64

BLAST of CU121498 vs. TrEMBL
Match: A0A061EBG7_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_011554 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-13
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PDMVDRLGGRN+ELSDQA TALT D+F+I+FAI CI+YVL+FKEP
Sbjct: 253 PDMVDRLGGRNMELSDQAMTALTFDVFVIIFAICCIIYVLVFKEP 297

Query: 122 181
           
Sbjct: 313 297

Query: 182 197
           
Sbjct: 373 297

BLAST of CU121498 vs. TrEMBL
Match: A0A0F7H024_9ROSI (Chaperone DnaJ-domain superfamily protein (Fragment) OS=Melianthus villosus GN=NDHT PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PD+VDRLGG+NL+LSDQASTALT+DI II+FAI CIVYVL+FKEP
Sbjct: 185 PDLVDRLGGKNLKLSDQASTALTIDIAIIIFAICCIVYVLIFKEP 229

Query: 122 181
           
Sbjct: 245 229

Query: 182 197
           
Sbjct: 305 229

BLAST of CU121498 vs. TrEMBL
Match: A5CA95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0117g00260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PDMVDRLGGRN+ELSDQA TALT DI II+FAI CI+YVL+FKEP
Sbjct: 207 PDMVDRLGGRNMELSDQAVTALTFDILIIIFAICCIIYVLVFKEP 251

Query: 122 181
           
Sbjct: 267 251

Query: 182 197
           
Sbjct: 327 251

BLAST of CU121498 vs. NCBI nr
Match: gi|449439697|ref|XP_004137622.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -2

Query: 62  TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP
Sbjct: 187 TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 232

Query: 122 181
           
Sbjct: 247 232

Query: 182 200
           
Sbjct: 307 232

BLAST of CU121498 vs. NCBI nr
Match: gi|778657329|ref|XP_011650709.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -2

Query: 62  TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP
Sbjct: 160 TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 205

Query: 122 181
           
Sbjct: 220 205

Query: 182 200
           
Sbjct: 280 205

BLAST of CU121498 vs. NCBI nr
Match: gi|659066817|ref|XP_008462782.1| (PREDICTED: dnaJ homolog subfamily B member 12 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = -2

Query: 62  TPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           TPDMVDRLGGRN+ELSDQA+TALTLDIFIILFAIACIVYVL+FKEP
Sbjct: 187 TPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEP 232

Query: 122 181
           
Sbjct: 247 232

Query: 182 200
           
Sbjct: 307 232

BLAST of CU121498 vs. NCBI nr
Match: gi|223525214|gb|EEF27898.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PDMVDRLGGRNLELSDQA +ALT+DIFI+LFAI CI+YVL FKEP
Sbjct: 20  PDMVDRLGGRNLELSDQAMSALTIDIFIVLFAIGCIIYVLYFKEP 64

Query: 122 181
           
Sbjct: 80  64

Query: 182 197
           
Sbjct: 140 64

BLAST of CU121498 vs. NCBI nr
Match: gi|590699286|ref|XP_007045885.1| (Chaperone DnaJ-domain superfamily protein [Theobroma cacao])

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 62  PDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEP 121
           PDMVDRLGGRN+ELSDQA TALT D+F+I+FAI CI+YVL+FKEP
Sbjct: 253 PDMVDRLGGRNMELSDQAMTALTFDVFVIIFAICCIIYVLVFKEP 297

Query: 122 181
           
Sbjct: 313 297

Query: 182 197
           
Sbjct: 373 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NDHT_ARATH2.5e-1373.33NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ... [more]
Match NameE-valueIdentityDescription
A0A0A0LT25_CUCSA2.2e-16100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042670 PE=4 SV=1[more]
B9T8B6_RICCO2.9e-1384.44Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0176710 PE=4 SV=1[more]
A0A061EBG7_THECC3.8e-1380.00Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_011554 PE=4 ... [more]
A0A0F7H024_9ROSI1.5e-1282.22Chaperone DnaJ-domain superfamily protein (Fragment) OS=Melianthus villosus GN=N... [more]
A5CA95_VITVI1.5e-1282.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0117g00260 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|449439697|ref|XP_004137622.1|1.5e-15100.00PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [C... [more]
gi|778657329|ref|XP_011650709.1|1.5e-15100.00PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X2 [C... [more]
gi|659066817|ref|XP_008462782.1|1.0e-1493.48PREDICTED: dnaJ homolog subfamily B member 12 [Cucumis melo][more]
gi|223525214|gb|EEF27898.1|2.1e-1284.44conserved hypothetical protein [Ricinus communis][more]
gi|590699286|ref|XP_007045885.1|2.7e-1280.00Chaperone DnaJ-domain superfamily protein [Theobroma cacao][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G042670Csa1G042670gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0005256G0005256EST
G0135748G0135748EST