CU120809 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU120809
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	SAUR-like auxin-responsive protein family
Location	Chr2 : 12577468 .. 12577714 (+)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAACCCAAATCTCTCACATATTCTCTTTTAAGTACAAGCACATTTTATCTCAATCAAATTCAGAGATGGGAATCCGTTTTCCTTCGGTCCTCCTCAGTGCCAAGCAGATTCTCAAGATGAAATCTGTTTCTATAAGATGTCAGTCTGATGTTCCCAAAGGCCACATTCCGGTGTATGTTGGAGAAAACCAGAGAAAGCGGTTTTTTGTTCCGATTTCTTACTTGAATCATCCTTCATTTGTGAATTT

Library


Library category	ESTs
fruit (8DPP) library	3

Homology

[Close]

BLAST of CU120809 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 31/54 (57.41%), Postives = 34/54 (62.96%), Query Frame = 2


Query: 86  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSF 145
           F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VPISYLN PSF
Sbjct: 3   FVRSLLGAKKIL---SRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSF 53

Query: 146  205
           
Sbjct: 63   53

Query: 206  248
           
Sbjct: 123  53

[Close]

BLAST of CU120809 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 2


Query: 98  LLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSF 157
           LL AK+IL   + ++   S  PKG + VYVGE+Q+KR+ VP+SYLN PSF
Sbjct: 7   LLGAKKILSRSTAAV---SAAPKGFLAVYVGESQKKRYLVPLSYLNQPSF 53

Query: 158  217
           
Sbjct: 67   53

Query: 218  248
           
Sbjct: 127  53

[Close]

BLAST of CU120809 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 2


Query: 86  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSF 145
           F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VP+SYLN PSF
Sbjct: 3   FVRSLLGAKKIL---SRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSF 53

Query: 146  205
           
Sbjct: 63   53

Query: 206  248
           
Sbjct: 123  53

[Close]

BLAST of CU120809 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-07
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 2


Query: 98  LLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSF 157
           LL AK+IL   + ++   S  PKG + VYVGE+Q+KR+ VP+SYLN PSF
Sbjct: 7   LLVAKKILSRSAAAV---SAPPKGFLAVYVGESQKKRYLVPLSYLNQPSF 53

Query: 158  217
           
Sbjct: 67   53

Query: 218  248
           
Sbjct: 127  53

[Close]

BLAST of CU120809 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 2


Query: 86  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSF 145
           F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VP+SYL+ PSF
Sbjct: 3   FVRSLLGAKKIL---SRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSF 53

Query: 146  205
           
Sbjct: 63   53

Query: 206  248
           
Sbjct: 123  53

[Close]

BLAST of CU120809 vs. TrEMBL
Match: A0A0A0LLF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258750 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN
Sbjct: 1   MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. TrEMBL
Match: A0A0A0LM65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIR PSVLLSAKQILKMK+VS RCQSDVPKGHIPVYVGENQRKRF VPISYLNHPSFVN
Sbjct: 1   MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVN 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. TrEMBL
Match: A0A0A0LJ92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258690 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFV 133
           MGIR PSVL +AKQ+LKM+SVS R QS VPKGHIPVYVGE  RKRFFVPISYL+HPSFV
Sbjct: 1   MGIRLPSVLAAAKQVLKMQSVSARSQSIVPKGHIPVYVGETDRKRFFVPISYLSHPSFV 59

Query: 134  193
           
Sbjct: 61   59

Query: 194  251
           
Sbjct: 121  59

[Close]

BLAST of CU120809 vs. TrEMBL
Match: A0A0A0LIZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MG R PS+L SAKQILK +S+S RCQS VPKGHI VYVGE Q+KRF VPISYLNHPSF++
Sbjct: 1   MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLD 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.3e-17
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIR PS+LL+AKQI +M+SVS RC S++PKGHI VYVGE +RKRF VP+SYLNHP+F++
Sbjct: 1   MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLS 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. NCBI nr
Match: gi|778669595|ref|XP_011649275.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.5e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN
Sbjct: 1   MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. NCBI nr
Match: gi|778669591|ref|XP_011649272.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIR PSVLLSAKQILKMK+VS RCQSDVPKGHIPVYVGENQRKRF VPISYLNHPSFVN
Sbjct: 1   MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVN 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. NCBI nr
Match: gi|659115594|ref|XP_008457634.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-23
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIR PSVLLSAKQILKMK+VS RCQSDVPKGHIPVYVGENQRKRF VPISYLNHPSFV+
Sbjct: 1   MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVH 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

[Close]

BLAST of CU120809 vs. NCBI nr
Match: gi|778669586|ref|XP_011649271.1| (PREDICTED: auxin-induced protein X10A-like [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFV 133
           MGIR PSVL +AKQ+LKM+SVS R QS VPKGHIPVYVGE  RKRFFVPISYL+HPSFV
Sbjct: 1   MGIRLPSVLAAAKQVLKMQSVSARSQSIVPKGHIPVYVGETDRKRFFVPISYLSHPSFV 59

Query: 134  193
           
Sbjct: 61   59

Query: 194  251
           
Sbjct: 121  59

[Close]

BLAST of CU120809 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 2


Query: 74  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 133
           MGIR PS+LL+AKQ+LKM+++S R QSDVPKGHI VYVGE QRKRF VPISYL HPSFV+
Sbjct: 1   MGIRLPSILLNAKQVLKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVD 60

Query: 134  193
           
Sbjct: 61   60

Query: 194  253
           
Sbjct: 121  60

The following BLAST results are available for this feature:

BLAST of CU120809 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU20_ARATH	1.5e-07	57.41	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU22_ARATH	2.0e-07	54.00	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU24_ARATH	3.4e-07	55.56	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU23_ARATH	5.7e-07	54.00	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
SAU19_ARATH	1.3e-06	53.70	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1	[more]

BLAST of CU120809 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLF7_CUCSA	6.5e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258750 PE=4 SV=1	[more]
A0A0A0LM65_CUCSA	1.4e-23	93.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1	[more]
A0A0A0LJ92_CUCSA	2.3e-18	81.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258690 PE=4 SV=1	[more]
A0A0A0LIZ4_CUCSA	2.5e-17	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	7.3e-17	70.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]

BLAST of CU120809 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669595\|ref\|XP_011649275.1\|	5.5e-26	100.00	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669591\|ref\|XP_011649272.1\|	1.1e-23	93.33	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115594\|ref\|XP_008457634.1\|	4.4e-23	91.67	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669586\|ref\|XP_011649271.1\|	1.9e-18	81.36	PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]	[more]
gi\|778669614\|ref\|XP_011649278.1\|	1.6e-17	76.67	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G258750	Csa2G258750	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02L822C	FKNP3UI02L822C	EST
FKNP3UI02MKM5L	FKNP3UI02MKM5L	EST
FKNP3UI02NMV9P	FKNP3UI02NMV9P	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 13..59 score: 9.5
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..60 score: 4.1
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 2..60 score: 4.1