CU120643 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU120643
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	60S ribosomal protein L6
Location	Chr4 : 8299494 .. 8299840 (+)
Sequence length	265

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAACCTCCACCAAGGTGGACACTGCAGGGGTCAATGTGGAGAAATTCGGTGACAAATATTTCTCCAAGGAAGTTCATCAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTCGAGGCAGAGAAGGAGGAAAAAAGTGCGCTCCCACAGGAGAAAAGGGATGACCAGAAGGCCGTGGACTCGGCTCTGCTAAAAGTCCATTGAGGCAGTCTCAGACTTGAAGACATACTTAGCTGACTAAGGTTTTTCTACTAAAAGGCAGGCATGAA

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	1

Homology

[Close]

BLAST of CU120643 vs. Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 42/87 (48.28%), Postives = 46/87 (52.87%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD +GVNVEKF DKYF K+  +                 + LPQEK+DDQKAVD A
Sbjct: 143 TSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVA 202

Query: 63  LLKVH*GSLRLEDILS*LRFFY*KAGM 122
           LLK   G   L+  L     F  KAGM
Sbjct: 203 LLKAIEGVPELKAYLG--ARFSLKAGM 227

Query: 123  182
           
Sbjct: 263  227

Query: 183  242
           
Sbjct: 323  227

Query: 243  264
           
Sbjct: 383  227

[Close]

BLAST of CU120643 vs. Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-08
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTK+D +GVN EKF DKYF K   +                   +PQEK++DQK VD+A
Sbjct: 142 TSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAA 201

Query: 63  LLK 122
           L+K
Sbjct: 202 LIK 204

Query: 123  182
           
Sbjct: 262  204

Query: 183  192
           
Sbjct: 322  204

[Close]

BLAST of CU120643 vs. Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-07
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD +GV ++KF DKYF K   +                   +PQ K+DDQKAVD+A
Sbjct: 142 TSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAA 201

Query: 63  LLK 122
           L+K
Sbjct: 202 LIK 204

Query: 123  182
           
Sbjct: 262  204

Query: 183  192
           
Sbjct: 322  204

[Close]

BLAST of CU120643 vs. Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-07
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD +GV ++KF DKYF K   +                   +PQ K+DDQKAVD+A
Sbjct: 142 TSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAA 201

Query: 63  LLK 122
           L+K
Sbjct: 202 LIK 204

Query: 123  182
           
Sbjct: 262  204

Query: 183  192
           
Sbjct: 322  204

[Close]

BLAST of CU120643 vs. TrEMBL
Match: A0A0A0KYA4_CUCSA (60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_4G153800 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 44/63 (69.84%), Postives = 45/63 (71.43%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD AGVNVEKFGDKYFSKEVHQ                 SALPQEK+DDQKAVDSA
Sbjct: 193 TSTKVDIAGVNVEKFGDKYFSKEVHQKKKKGEGEFFEAEKEEKSALPQEKKDDQKAVDSA 252

Query: 63  LLK 122
           LLK
Sbjct: 253 LLK 255

Query: 123  182
           
Sbjct: 313  255

Query: 183  192
           
Sbjct: 373  255

[Close]

BLAST of CU120643 vs. TrEMBL
Match: A0A0A0KYA4_CUCSA (60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_4G153800 PE=3 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 2.3e+03
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1


Query: 190 KSIEAVSDLKTYLA 232
           KSIEAVSDLKTYLA
Sbjct: 255 KSIEAVSDLKTYLA 268

HSP 2 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD  GV+VEKF DKYFSKEV +                 SALPQ+K+DDQKAVDSA
Sbjct: 140 TSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKAVDSA 199

Query: 63  LLK 122
           LLK
Sbjct: 200 LLK 202

Query: 123  182
           
Sbjct: 260  202

Query: 183  192
           
Sbjct: 320  202

[Close]

BLAST of CU120643 vs. TrEMBL
Match: A0A0A0L9J7_CUCSA (60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_3G698560 PE=3 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 2.3e+03
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1


Query: 190 KSIEAVSDLKTYLA 232
           KSIEAVSDLKTYLA
Sbjct: 202 KSIEAVSDLKTYLA 215

HSP 2 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD +GVNVEKF DKYF+K+V +                 + LPQEK+DDQK+VD+A
Sbjct: 137 TSTKVDVSGVNVEKFDDKYFAKKVEKKKSKGEGEFFEAEKEEKNVLPQEKKDDQKSVDAA 196

Query: 63  LLK 122
           L+K
Sbjct: 197 LIK 199

Query: 123  182
           
Sbjct: 257  199

Query: 183  192
           
Sbjct: 317  199

[Close]

BLAST of CU120643 vs. TrEMBL
Match: M1AFN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008445 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD +GVNVEK  DKYF+K+V +                 + LPQEK+D+QKAVD+A
Sbjct: 138 TSTKVDVSGVNVEKIDDKYFAKQVEKKQKKGEGEFFEDKKEEKNVLPQEKKDEQKAVDAA 197

Query: 63  LLKVH*GSLRLEDILS 122
           LLK   G   L+  LS
Sbjct: 198 LLKTIEGIPELKAYLS 213

Query: 123  182
           
Sbjct: 258  213

Query: 183  231
           
Sbjct: 318  213

[Close]

BLAST of CU120643 vs. TrEMBL
Match: F6HB97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01390 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD +GVNVEKF DKYF+KE  +                 S LPQEK+DDQKAVD+ 
Sbjct: 142 TSTKVDISGVNVEKFDDKYFAKETQKKKKKGEGEFFEADKEEKSVLPQEKKDDQKAVDTP 201

Query: 63  LLK 122
           L+K
Sbjct: 202 LIK 204

Query: 123  182
           
Sbjct: 262  204

Query: 183  192
           
Sbjct: 322  204

[Close]

BLAST of CU120643 vs. NCBI nr
Match: gi|778692213|ref|XP_004150161.2| (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 44/63 (69.84%), Postives = 45/63 (71.43%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD AGVNVEKFGDKYFSKEVHQ                 SALPQEK+DDQKAVDSA
Sbjct: 140 TSTKVDIAGVNVEKFGDKYFSKEVHQKKKKGEGEFFEAEKEEKSALPQEKKDDQKAVDSA 199

Query: 63  LLK 122
           LLK
Sbjct: 200 LLK 202

Query: 123  182
           
Sbjct: 260  202

Query: 183  192
           
Sbjct: 320  202

[Close]

BLAST of CU120643 vs. NCBI nr
Match: gi|700198671|gb|KGN53829.1| (hypothetical protein Csa_4G153800 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 44/63 (69.84%), Postives = 45/63 (71.43%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD AGVNVEKFGDKYFSKEVHQ                 SALPQEK+DDQKAVDSA
Sbjct: 193 TSTKVDIAGVNVEKFGDKYFSKEVHQKKKKGEGEFFEAEKEEKSALPQEKKDDQKAVDSA 252

Query: 63  LLK 122
           LLK
Sbjct: 253 LLK 255

Query: 123  182
           
Sbjct: 313  255

Query: 183  192
           
Sbjct: 373  255

[Close]

BLAST of CU120643 vs. NCBI nr
Match: gi|659121739|ref|XP_008460790.1| (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-10
Identity = 40/63 (63.49%), Postives = 42/63 (66.67%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD AGVNVEKF DKYFSKEV +                 SALPQ K+DDQKAVDSA
Sbjct: 140 TSTKVDIAGVNVEKFHDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQVKKDDQKAVDSA 199

Query: 63  LLK 122
           LLK
Sbjct: 200 LLK 202

Query: 123  182
           
Sbjct: 260  202

Query: 183  192
           
Sbjct: 320  202

[Close]

BLAST of CU120643 vs. NCBI nr
Match: gi|659123670|ref|XP_008461779.1| (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 5.7e-10
Identity = 38/63 (60.32%), Postives = 41/63 (65.08%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD  GVNVEKF DKYFSKEV +                 SALPQ+K+DDQK VDSA
Sbjct: 140 TSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKTVDSA 199

Query: 63  LLK 122
           LLK
Sbjct: 200 LLK 202

Query: 123  182
           
Sbjct: 260  202

Query: 183  192
           
Sbjct: 320  202

[Close]

BLAST of CU120643 vs. NCBI nr
Match: gi|449463779|ref|XP_004149609.1| (PREDICTED: 60S ribosomal protein L6-2-like [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-10
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 3


Query: 3   TSTKVDTAGVNVEKFGDKYFSKEVHQXXXXXXXXXXXXXXXXXSALPQEKRDDQKAVDSA 62
           TSTKVD  GV+VEKF DKYFSKEV +                 SALPQ+K+DDQKAVDSA
Sbjct: 140 TSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKAVDSA 199

Query: 63  LLK 122
           LLK
Sbjct: 200 LLK 202

Query: 123  182
           
Sbjct: 260  202

Query: 183  192
           
Sbjct: 320  202

The following BLAST results are available for this feature:

BLAST of CU120643 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL6_MESCR	1.5e-10	48.28	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1	[more]
RL61_ARATH	5.4e-08	44.44	60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1	[more]
RL62_ARATH	2.7e-07	44.44	60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1	[more]
RL63_ARATH	2.7e-07	44.44	60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1	[more]

BLAST of CU120643 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYA4_CUCSA	1.3e-13	69.84	60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_4G153800 PE=3 SV=1	[more]
A0A0A0KYA4_CUCSA	2.3e+03	100.00	60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_4G153800 PE=3 SV=1	[more]
A0A0A0L9J7_CUCSA	2.3e+03	100.00	60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_3G698560 PE=3 SV=1	[more]
M1AFN7_SOLTU	1.3e-08	48.68	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008445 PE=4 SV=1	[more]
F6HB97_VITVI	1.3e-08	53.97	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01390 PE=4 SV=...	[more]

BLAST of CU120643 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692213\|ref\|XP_004150161.2\|	1.9e-13	69.84	PREDICTED: 60S ribosomal protein L6-1-like [Cucumis sativus]	[more]
gi\|700198671\|gb\|KGN53829.1\|	1.9e-13	69.84	hypothetical protein Csa_4G153800 [Cucumis sativus]	[more]
gi\|659121739\|ref\|XP_008460790.1\|	2.6e-10	63.49	PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo]	[more]
gi\|659123670\|ref\|XP_008461779.1\|	5.7e-10	60.32	PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo]	[more]
gi\|449463779\|ref\|XP_004149609.1\|	7.5e-10	60.32	PREDICTED: 60S ribosomal protein L6-2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000915	60S_ribosomal_L6E

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G153800	Csa4G153800	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LOSMC	FKNP3UI02LOSMC	EST
G0208744	G0208744	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 2..64 score: 4.9
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 2..64 score: 8.3