CU119857 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU119857
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Eukaryotic aspartyl protease family protein
Location	Chr3 : 13265197 .. 13265466 (-)
Sequence length	277

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAAGGCTTGGGGATTGGAAGTAATATAATCGGTACCGTTCATCAACAGAATATGTGGGTGGAGTATGATTTGGCCAATAAGAGAGTAGGGTTTGGTGGAGCTGAGTGTAGCAGATTGAAGTGATGATGGACAGTAAAGATTTATACACGTGTGTGGGTTTTGAATGTTTATATAATCATATTTGATATTGTGTTATTGTGTAAATGTGTGTATAGTTATTTCATTTCACATATATACTTTATATATAAAATAAAAACAAAAAAATTTTCTATAACCT

Library


Library category	ESTs
gynoecious flower library	2

Homology

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BLAST of CU119857 vs. TrEMBL
Match: A0A0A0L6V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G188350 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 1   EGLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 60
           E LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK
Sbjct: 303 ERLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 342

Query: 61   120
           
Sbjct: 363  342

[Close]

BLAST of CU119857 vs. TrEMBL
Match: A0A0A0LBQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G188340 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1


Query: 7   LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 66
           LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK
Sbjct: 325 LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 362

Query: 67   121
           
Sbjct: 385  362

[Close]

BLAST of CU119857 vs. TrEMBL
Match: G7KG25_MEDTR (Eukaryotic aspartyl protease family protein OS=Medicago truncatula GN=MTR_5g077850 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-08
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1


Query: 1   EGLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRL 60
           E LG G NIIG  HQQN+WVE+DLAN+RVGFG A+CS+L
Sbjct: 402 ERLGAGGNIIGNFHQQNLWVEFDLANRRVGFGEADCSKL 440

Query: 61   118
           
Sbjct: 462  440

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BLAST of CU119857 vs. TrEMBL
Match: A0A0L9U8R6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g261700 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-08
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 7   LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRL 66
           LG  SNIIG  HQQN+WVE+DLAN+RVGFG A+CSRL
Sbjct: 360 LGAASNIIGNFHQQNLWVEFDLANRRVGFGAADCSRL 396

Query: 67   118
           
Sbjct: 420  396

[Close]

BLAST of CU119857 vs. TrEMBL
Match: I1MBU0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G212700 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-08
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1


Query: 1   EGLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRL 60
           E LG  SNIIG  HQQN+WVE+DLAN+R+GFG A+CSRL
Sbjct: 405 ERLGAASNIIGNFHQQNLWVEFDLANRRIGFGVADCSRL 443

Query: 61   118
           
Sbjct: 465  443

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BLAST of CU119857 vs. NCBI nr
Match: gi|778679913|ref|XP_004140731.2| (PREDICTED: aspartic proteinase PCS1-like [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 1   EGLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 60
           E LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK
Sbjct: 391 ERLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 430

Query: 61   120
           
Sbjct: 451  430

[Close]

BLAST of CU119857 vs. NCBI nr
Match: gi|700202330|gb|KGN57463.1| (hypothetical protein Csa_3G188350 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 1   EGLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 60
           E LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK
Sbjct: 303 ERLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 342

Query: 61   120
           
Sbjct: 363  342

[Close]

BLAST of CU119857 vs. NCBI nr
Match: gi|778679910|ref|XP_011651212.1| (PREDICTED: aspartic proteinase PCS1-like [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1


Query: 7   LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 66
           LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK
Sbjct: 394 LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 431

Query: 67   121
           
Sbjct: 454  431

[Close]

BLAST of CU119857 vs. NCBI nr
Match: gi|700202328|gb|KGN57461.1| (hypothetical protein Csa_3G188340 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1


Query: 7   LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 66
           LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK
Sbjct: 325 LGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 362

Query: 67   121
           
Sbjct: 385  362

[Close]

BLAST of CU119857 vs. NCBI nr
Match: gi|659114575|ref|XP_008457122.1| (PREDICTED: aspartic proteinase PCS1 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 1   EGLGIGSNIIGTVHQQNMWVEYDLANKRVGFGGAECSRLK 60
           E LGIGSNIIGTVHQQNMWVEYDL N+R+GFGGAECSRLK
Sbjct: 390 ERLGIGSNIIGTVHQQNMWVEYDLTNRRIGFGGAECSRLK 429

Query: 61   120
           
Sbjct: 450  429

The following BLAST results are available for this feature:

BLAST of CU119857 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6V5_CUCSA	1.1e-13	97.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G188350 PE=3 SV=1	[more]
A0A0A0LBQ0_CUCSA	2.4e-13	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G188340 PE=3 SV=1	[more]
G7KG25_MEDTR	4.0e-08	71.79	Eukaryotic aspartyl protease family protein OS=Medicago truncatula GN=MTR_5g0778...	[more]
A0A0L9U8R6_PHAAN	4.0e-08	75.68	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g261700 PE=3 SV=1	[more]
I1MBU0_SOYBN	5.2e-08	71.79	Uncharacterized protein OS=Glycine max GN=GLYMA_14G212700 PE=3 SV=1	[more]

BLAST of CU119857 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679913\|ref\|XP_004140731.2\|	1.4e-14	97.50	PREDICTED: aspartic proteinase PCS1-like [Cucumis sativus]	[more]
gi\|700202330\|gb\|KGN57463.1\|	1.4e-14	97.50	hypothetical protein Csa_3G188350 [Cucumis sativus]	[more]
gi\|778679910\|ref\|XP_011651212.1\|	3.1e-14	100.00	PREDICTED: aspartic proteinase PCS1-like [Cucumis sativus]	[more]
gi\|700202328\|gb\|KGN57461.1\|	3.1e-14	100.00	hypothetical protein Csa_3G188340 [Cucumis sativus]	[more]
gi\|659114575\|ref\|XP_008457122.1\|	1.2e-13	90.00	PREDICTED: aspartic proteinase PCS1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001461	Aspartic_peptidase_A1
IPR021109	Peptidase_aspartic_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004190	aspartic-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G188340	Csa3G188340	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0042343	G0042343	EST
G0140888	G0140888	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001461	Aspartic peptidase A1 family	PANTHER	PTHR13683	ASPARTYL PROTEASES	coord: 1..39 score: 4.8
IPR021109	Aspartic peptidase domain	GENE3D	G3DSA:2.40.70.10		coord: 7..38 score: 3.0
IPR021109	Aspartic peptidase domain	unknown	SSF50630	Acid proteases	coord: 6..38 score: 1.9
None	No IPR available	PANTHER	PTHR13683:SF327	ASPARTYL PROTEASE FAMILY PROTEIN	coord: 1..39 score: 4.8