CU119260 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU119260
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 32462577 .. 32463041 (+)
Sequence length	254

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTTATATAAAATCGTTCCTCACCAGTCAGATCGTGTGGTTTCACCATAGGACCCTGAACTTTAGGAACTTCATACCGCCTTAACCTCTCAATCAGCAATGCTTCCTTAATCCTGGCGTTTTCCAGCTTGTTCTTGATTCTCTCTGCTGCATTTGGAAATTTCTGTTTCTTCTTCCCCTTGACACGCAGTTGACGAGGGTCTCTCTTATTTGCTGCTTTTCTTTTCTGCCTTAATCTCATTCGCTGCATCTTCT

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU119260 vs. TrEMBL
Match: A0A067LI04_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20864 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = -3


Query: 1   ANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPH 60
           ANKRDPR+L VK KKKQKF NA ERIK KLE A+IKEA LIERL+RYEVPKVQGP VKPH
Sbjct: 13  ANKRDPRRLTVKRKKKQKFANAEERIKFKLERAKIKEAALIERLKRYEVPKVQGPEVKPH 72

Query: 61  DLTGEERFYIK 120
           DLTGEERF++K
Sbjct: 73  DLTGEERFFVK 83

Query: 121  180
           
Sbjct: 133  83

Query: 181  214
           
Sbjct: 193  83

[Close]

BLAST of CU119260 vs. TrEMBL
Match: V4T7K8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020228mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.1e-24
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -3


Query: 1   ANKRDPRQLRVKGKKK-QKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKP 60
           ANKRDPR+L VKGKKK QKF NA +RIK KLE A+IKEALLIERL+RYEVPKVQGP+VKP
Sbjct: 103 ANKRDPRRLTVKGKKKKQKFANAEDRIKYKLEKAKIKEALLIERLKRYEVPKVQGPVVKP 162

Query: 61  HDLTGEERFYIK 120
           H+LTGEERFY K
Sbjct: 163 HELTGEERFYFK 174

Query: 121  180
           
Sbjct: 223  174

Query: 181  214
           
Sbjct: 283  174

[Close]

BLAST of CU119260 vs. TrEMBL
Match: A0A068V4M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00043233001 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = -3


Query: 1   AANKRDPRQLRVKGKKK-QKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVK 60
           AANKRDPR+L VKGKKK Q+F NA ERIK KLE A+IKEALLIERL+RYEV KVQGP+VK
Sbjct: 95  AANKRDPRRLGVKGKKKKQRFANAEERIKYKLERAKIKEALLIERLKRYEVNKVQGPVVK 154

Query: 61  PHDLTGEERFYIK 120
           PH+LTGEERFY+K
Sbjct: 155 PHELTGEERFYMK 167

Query: 121  180
           
Sbjct: 215  167

Query: 181  217
           
Sbjct: 275  167

[Close]

BLAST of CU119260 vs. TrEMBL
Match: A0A068UUV5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035780001 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = -3


Query: 1   AANKRDPRQLRVKGKKK-QKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVK 60
           AANKRDPR+L VKGKKK Q+F NA ERIK KLE A+IKEALLIERL+RYEV KVQGP+VK
Sbjct: 121 AANKRDPRRLGVKGKKKKQRFANAEERIKYKLERAKIKEALLIERLKRYEVNKVQGPVVK 180

Query: 61  PHDLTGEERFYIK 120
           PH+LTGEERFY+K
Sbjct: 181 PHELTGEERFYMK 193

Query: 121  180
           
Sbjct: 241  193

Query: 181  217
           
Sbjct: 301  193

[Close]

BLAST of CU119260 vs. TrEMBL
Match: K4CQ17_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.8e-23
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = -3


Query: 1   AANKRDPRQLRVKGKKK-QKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVK 60
           AANKRDPR+L +KGKKK QKF  A ERIK K+ENA++KEALLIERL+RYEV KVQGP VK
Sbjct: 111 AANKRDPRRLGLKGKKKKQKFDTAEERIKQKIENAKVKEALLIERLKRYEVTKVQGPEVK 170

Query: 61  PHDLTGEERFYIK 120
           PH LTGEERFYIK
Sbjct: 171 PHFLTGEERFYIK 183

Query: 121  180
           
Sbjct: 231  183

Query: 181  217
           
Sbjct: 291  183

[Close]

BLAST of CU119260 vs. NCBI nr
Match: gi|449437795|ref|XP_004136676.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = -3


Query: 1   AANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKP 60
           AANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKP
Sbjct: 106 AANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKP 165

Query: 61  HDLTGEERFYIK 120
           HDLTGEERFYIK
Sbjct: 166 HDLTGEERFYIK 177

Query: 121  180
           
Sbjct: 226  177

Query: 181  217
           
Sbjct: 286  177

[Close]

BLAST of CU119260 vs. NCBI nr
Match: gi|659085302|ref|XP_008443348.1| (PREDICTED: uncharacterized protein LOC103486957 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-28
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = -3


Query: 1   AANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKP 60
           AANKRDPRQLRVKGKKKQKFPNAAERIKNKLE ARIKEALLIERL+RYEVP+VQGP+VKP
Sbjct: 106 AANKRDPRQLRVKGKKKQKFPNAAERIKNKLERARIKEALLIERLKRYEVPEVQGPIVKP 165

Query: 61  HDLTGEERFYIK 120
           H+LT EERFYIK
Sbjct: 166 HNLTAEERFYIK 177

Query: 121  180
           
Sbjct: 226  177

Query: 181  217
           
Sbjct: 286  177

[Close]

BLAST of CU119260 vs. NCBI nr
Match: gi|643737829|gb|KDP43854.1| (hypothetical protein JCGZ_20864 [Jatropha curcas])

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-23
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = -3


Query: 1   ANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPH 60
           ANKRDPR+L VK KKKQKF NA ERIK KLE A+IKEA LIERL+RYEVPKVQGP VKPH
Sbjct: 13  ANKRDPRRLTVKRKKKQKFANAEERIKFKLERAKIKEAALIERLKRYEVPKVQGPEVKPH 72

Query: 61  DLTGEERFYIK 120
           DLTGEERF++K
Sbjct: 73  DLTGEERFFVK 83

Query: 121  180
           
Sbjct: 133  83

Query: 181  214
           
Sbjct: 193  83

[Close]

BLAST of CU119260 vs. NCBI nr
Match: gi|802554972|ref|XP_012065185.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas])

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-23
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = -3


Query: 1   ANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPH 60
           ANKRDPR+L VK KKKQKF NA ERIK KLE A+IKEA LIERL+RYEVPKVQGP VKPH
Sbjct: 108 ANKRDPRRLTVKRKKKQKFANAEERIKFKLERAKIKEAALIERLKRYEVPKVQGPEVKPH 167

Query: 61  DLTGEERFYIK 120
           DLTGEERF++K
Sbjct: 168 DLTGEERFFVK 178

Query: 121  180
           
Sbjct: 228  178

Query: 181  214
           
Sbjct: 288  178

[Close]

BLAST of CU119260 vs. NCBI nr
Match: gi|567901040|ref|XP_006443008.1| (hypothetical protein CICLE_v10020228mg [Citrus clementina])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -3


Query: 1   ANKRDPRQLRVKGKKK-QKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKP 60
           ANKRDPR+L VKGKKK QKF NA +RIK KLE A+IKEALLIERL+RYEVPKVQGP+VKP
Sbjct: 103 ANKRDPRRLTVKGKKKKQKFANAEDRIKYKLEKAKIKEALLIERLKRYEVPKVQGPVVKP 162

Query: 61  HDLTGEERFYIK 120
           H+LTGEERFY K
Sbjct: 163 HELTGEERFYFK 174

Query: 121  180
           
Sbjct: 223  174

Query: 181  214
           
Sbjct: 283  174

The following BLAST results are available for this feature:

BLAST of CU119260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067LI04_JATCU	4.7e-24	81.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20864 PE=4 SV=1	[more]
V4T7K8_9ROSI	6.1e-24	81.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020228mg PE=4 SV=1	[more]
A0A068V4M1_COFCA	2.3e-23	80.82	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00043233001 PE=4 SV=1	[more]
A0A068UUV5_COFCA	2.3e-23	80.82	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035780001 PE=4 SV=1	[more]
K4CQ17_SOLLC	8.8e-23	79.45	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CU119260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437795\|ref\|XP_004136676.1\|	3.3e-31	100.00	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|659085302\|ref\|XP_008443348.1\|	5.9e-28	91.67	PREDICTED: uncharacterized protein LOC103486957 [Cucumis melo]	[more]
gi\|643737829\|gb\|KDP43854.1\|	9.7e-23	81.69	hypothetical protein JCGZ_20864 [Jatropha curcas]	[more]
gi\|802554972\|ref\|XP_012065185.1\|	9.7e-23	81.69	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|567901040\|ref\|XP_006443008.1\|	1.3e-22	81.94	hypothetical protein CICLE_v10020228mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G823620	Csa3G823620	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NDXYZ	FKNP3UI02NDXYZ	EST
H0037547	H0037547	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 37..57 scor
None	No IPR available	PANTHER	PTHR31426	FAMILY NOT NAMED	coord: 2..85 score: 2.8
None	No IPR available	PANTHER	PTHR31426:SF2	SUBFAMILY NOT NAMED	coord: 2..85 score: 2.8