Csa3G823620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G823620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChloroplastic group IIA intron splicing facilitator CRS1; contains IPR001890 (RNA-binding, CRM domain)
LocationChr3 : 32460778 .. 32463626 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATCTTTGTTTCATAATCTTCGCAGAGCTCCTCTGCTTTTCAGATCATCATCTCTGAACCAACTGTCTTTCAGGTACTATTCATTCAAGCTTCTTCCATCTTCTTTACTTGAATATCGATGTGTTTTTATTTTGAAGAGCAATTTCCAACCCCCTTTACTTCAATTTTGCACATTACTGATAAATTTCTTTGTTGTTCTGTTTCCTCTCGTTTTTTATGCGTTTATAATTTAACCTGGCCTAGCAGGTTCTAGATTGGAAGATAAAAACTTGTGTTTGATTTTGAAGGAAATAGTTTAGAATCTACAATATGGATTTATTAAATTTTGCTGAGTTTTCTGGTTGAATTCTAATTTGTTTCCATCATATATTTTTCTTGCAGACCTATTCTTGAGATCCCTGACACTGTTTTCTCCCAAATCAAAAAATTTCCTGAAGCCAACATCTCAAAACCTTTGTTGGGATTTAGAAATCTGAGCCATGGTTCTGTGAATCTTGTCGTATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTAGATCCTCCAAAAAAAGAGAAGTGGAAAACTAAAAAAAAGTTGAAGATGCAGCGAATGAGATTAAAGCAGAAAAGAAAAGCAGCAAATAAGAGAGACCCTCGTCAACTGCGTGTCAAGGGGAAGAAGAAACAGAAATTTCCAAATGCAGCAGAGAGAATCAAGAACAAGCTGGAAAACGTAAGCAAAAAAGAAATGTTTCAGAAATGTTACATGGGTCTATAATGTTAAGGTCTAGTTTATTCAATGTATTTGGGGAAAGTTCGCTCACTTCAAAAGAAAAGATTTTTCTTTTTTTTTTTTTGGGATTAGAGGAGATAGTTTTCAACTTCATCGATGTTGGCAATTTTTCATATGTTATTCAGTTACAGTTGCACATATTTTGTTGCAGGCCAGGATTAAGGAAGCATTGCTGATTGAGAGGTTAAGGCGGTATGAAGTTCCTAAAGTTCAGGGTCCTATGGTGAAACCACACGATCTGACTGGTGAGGAACGATTTTATATAAAGAAAATGGGTCAAAAGAGATCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTCTAAACATGCACATGCATTGGAAGAAACACGAAACTGTTAAAGTTTATTGCAAGCCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATCGGTGATGATACTATTATCTTCTATCGAGGGAAGGACTATGTGCAACCAGAAGTTATGTCACCAATTGATACATTATCTAAAAAACGGGTTAGTCTTTAAATTTTCAGTTTTCCTAATGTATTCAGTGAATTTTTGTAAAGTACTTGTCTTTAAATTGGAAATCCGAGTGTTTGGACCAGTGCATCTTTATTTTAGACATTAAAGTGAAGGAGAATGTACAGTAGGATTATTTAGCTTTTTGAGTGTAAAATATGCACATGGGAGTGAGCCGTGTAATTAAGTAACAGTATTGAAGTTAGAGAAGTGTGCAGTTCACCTAAGCAAATATTTTGGGTTTTTGGATTGTTGGAGTGTCAAACACTGGGGAGGGAGAGTACAAGCCTCTTGGAGACTTGGAGAGTTTGTAATTCTTTTCTTCAGTAATGATCCAGATCCAGCGGTTTCATAGATAACAAGTCCAAAATCACAACTGTGCTTTTGTTCTATGTTCTCTGTCCTATCAGAATTTTGTGGTGTAAATGGTTCTATAGCGGCTCTTCTCTGAGCTTTCTTGGGGAAAAAAGAATCAAACAAACAGAGAGGGAAGTTTAGGATTTTGCATCTTGTGAAATTTGATAGAGAGCATTACTGTACAATGATATTGCTAACATTTAACAATAACAGGCAATTCCTATCATGCTGTCAGGTGTGTAGATACCTTGAAGAATAATGCAGTATTCCATTTTCACGTTAAGTCATTTAGTTAGCTTGATTAGAAAACAACGTACTGAAATTAGGCCGTTGTATAGGAAAGCCTTCATTTAACAGCAAATACCCAAATGTTGCGAACTTGGTCTGGTCTCCCGTTATGTTATCGTATTGTTTGCCTTTTGTTATCCTACCTTTGTAGCAATGGACATGTTTAAAACGTCGATGTGAATGTTAAGTGGATTTTTTTTCTTTTTCTTTTTTCGGAAATTGAATATGAATATATCATGTGAACGCCTTCCATCCTTGCAGGCACTGGAAAAGTCCAAATACGAGCAATCCCTCGAGTCTGTACGCCGCTTCATTGCCATTGCTGAGAAGGAACTGGAGCTATATTACAGGCATATTGCACTTTACGGTGATCCAAATGATAGGAACCCATTGTCCATCTTAAACGTTCCATCTGACAACTTGAACTCAGACAAATATCAAATTACTAATATGGAAGACTCTCATTCTGCTGCTCTTTGCCTAGCATCTGATGTTATGAATCAAAGAAATCCCGATTTCTCGGATGACGAATCATTAGATATTGGAGATGGATTTGCAGATGCTTGCTTTTCTACAAGTGAATCAGATTTTGAAAGTGACAAATTAGATGAGTCTGGTGAAGGGAGAATGGAAGTTAGTGTTTCCCAGACGGAAGAGATTTCCTCAACCACAATGAACACATGTTCAGCTTTCCCGAACAAGTGTGAATTTCATAAGCAAGAACTACCGATACACTCATAAAAATTGCATTAGATGGAAGTTTGATTTTTGTTCAACTTCAACAGATGTATGATACTTTGATTCAATGAAAACACGAGTTAATTTGTGTATAAAAGAAATTTTCAAATATCATAATAGCCAAC

mRNA sequence

ATGGCCAAATCTTTGTTTCATAATCTTCGCAGAGCTCCTCTGCTTTTCAGATCATCATCTCTGAACCAACTGTCTTTCAGACCTATTCTTGAGATCCCTGACACTGTTTTCTCCCAAATCAAAAAATTTCCTGAAGCCAACATCTCAAAACCTTTGTTGGGATTTAGAAATCTGAGCCATGGTTCTGTGAATCTTGTCGTATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTAGATCCTCCAAAAAAAGAGAAGTGGAAAACTAAAAAAAAGTTGAAGATGCAGCGAATGAGATTAAAGCAGAAAAGAAAAGCAGCAAATAAGAGAGACCCTCGTCAACTGCGTGCCAGGATTAAGGAAGCATTGCTGATTGAGAGGTTAAGGCGGTATGAAGTTCCTAAAGTTCAGGGTCCTATGGTGAAACCACACGATCTGACTGGTGAGGAACGATTTTATATAAAGAAAATGGGTCAAAAGAGATCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTCTAAACATGCACATGCATTGGAAGAAACACGAAACTGTTAAAGTTTATTGCAAGCCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATCGGTGATGATACTATTATCTTCTATCGAGGGAAGGACTATGTGCAACCAGAAGTTATGTCACCAATTGATACATTATCTAAAAAACGGGCACTGGAAAAGTCCAAATACGAGCAATCCCTCGAGTCTGTACGCCGCTTCATTGCCATTGCTGAGAAGGAACTGGAGCTATATTACAGGCATATTGCACTTTACGGTGATCCAAATGATAGGAACCCATTGTCCATCTTAAACGTTCCATCTGACAACTTGAACTCAGACAAATATCAAATTACTAATATGGAAGACTCTCATTCTGCTGCTCTTTGCCTAGCATCTGATGTTATGAATCAAAGAAATCCCGATTTCTCGGATGACGAATCATTAGATATTGGAGATGGATTTGCAGATGCTTGCTTTTCTACAAGTGAATCAGATTTTGAAAGTGACAAATTAGATGAGTCTGGTGAAGGGAGAATGGAAGTTAGTGTTTCCCAGACGGAAGAGATTTCCTCAACCACAATGAACACATGTTCAGCTTTCCCGAACAAGTGTGAATTTCATAAGCAAGAACTACCGATACACTCATAA

Coding sequence (CDS)

ATGGCCAAATCTTTGTTTCATAATCTTCGCAGAGCTCCTCTGCTTTTCAGATCATCATCTCTGAACCAACTGTCTTTCAGACCTATTCTTGAGATCCCTGACACTGTTTTCTCCCAAATCAAAAAATTTCCTGAAGCCAACATCTCAAAACCTTTGTTGGGATTTAGAAATCTGAGCCATGGTTCTGTGAATCTTGTCGTATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTAGATCCTCCAAAAAAAGAGAAGTGGAAAACTAAAAAAAAGTTGAAGATGCAGCGAATGAGATTAAAGCAGAAAAGAAAAGCAGCAAATAAGAGAGACCCTCGTCAACTGCGTGCCAGGATTAAGGAAGCATTGCTGATTGAGAGGTTAAGGCGGTATGAAGTTCCTAAAGTTCAGGGTCCTATGGTGAAACCACACGATCTGACTGGTGAGGAACGATTTTATATAAAGAAAATGGGTCAAAAGAGATCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTCTAAACATGCACATGCATTGGAAGAAACACGAAACTGTTAAAGTTTATTGCAAGCCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATCGGTGATGATACTATTATCTTCTATCGAGGGAAGGACTATGTGCAACCAGAAGTTATGTCACCAATTGATACATTATCTAAAAAACGGGCACTGGAAAAGTCCAAATACGAGCAATCCCTCGAGTCTGTACGCCGCTTCATTGCCATTGCTGAGAAGGAACTGGAGCTATATTACAGGCATATTGCACTTTACGGTGATCCAAATGATAGGAACCCATTGTCCATCTTAAACGTTCCATCTGACAACTTGAACTCAGACAAATATCAAATTACTAATATGGAAGACTCTCATTCTGCTGCTCTTTGCCTAGCATCTGATGTTATGAATCAAAGAAATCCCGATTTCTCGGATGACGAATCATTAGATATTGGAGATGGATTTGCAGATGCTTGCTTTTCTACAAGTGAATCAGATTTTGAAAGTGACAAATTAGATGAGTCTGGTGAAGGGAGAATGGAAGTTAGTGTTTCCCAGACGGAAGAGATTTCCTCAACCACAATGAACACATGTTCAGCTTTCCCGAACAAGTGTGAATTTCATAAGCAAGAACTACCGATACACTCATAA

Protein sequence

MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSHGSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS*
Homology
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BLAST of Csa3G823620 vs. Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-40
Identity = 91/194 (46.91%), Postives = 124/194 (63.92%), Query Frame = 1 

Query: 86  KWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIKEALLIERLRRYEVPKVQGPMVKPHD 145
           +WK KK+ +    R+  + K  NK      +AR KE  L+E +++ E  +       P  
Sbjct: 125 RWKKKKEFE----RMTSEEKILNKLR----KARKKEERLMETMKKLEPSESAETTHDPEI 184

Query: 146 LTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEY 205
           LT EE FY  KMG K  NYVP+GRRG++ GVILNMH+HWKKH+T++V  K   P +V E 
Sbjct: 185 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 244

Query: 206 AQEIARLSGGIPIQIIGDDTIIFYRGKDYVQP--EVMSPIDTLSKKRALEKSKYEQSLES 265
           A E+ARL+GGI + +   +TII YRGK+YVQP  E+MSP  TL +K+AL+KSK   +L +
Sbjct: 245 AVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRA 304

Query: 266 VRRFIAIAEKELEL 278
           VR++I   E+EL+L
Sbjct: 305 VRKYIPRLEQELQL 310

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BLAST of Csa3G823620 vs. Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-20
Identity = 88/356 (24.72%), Postives = 160/356 (44.94%), Query Frame = 1 

Query: 71  KPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKR--KAANKRDPRQLRARIKEALLIER- 130
           KP+    +++   K++   K  ++  +M+ +Q+   +A  ++   +L   +++    E+ 
Sbjct: 503 KPRAVKEDIELEAKDQ---KDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKV 562

Query: 131 ---LRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHW 190
              L   E P++    +    +T +E++ ++K+G K   ++ +GRRGVF G I NMH+HW
Sbjct: 563 LADLENRESPQLSD--IDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHW 622

Query: 191 KKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMS 250
           K  E VK+ C        H+ A+ +   SGGI +    +     II YRGK+Y +P+ + 
Sbjct: 623 KYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLR 682

Query: 251 PIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPS 310
           P   LSK+ AL++S   Q  +S++  +      +E   R +      N+          S
Sbjct: 683 PQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNE--------TWS 742

Query: 311 DNLNSDKYQITNMEDSHS--------AALCLASDVMNQRNPDFSDDESLDIGDGFADACF 370
           D  +S+       E+ H+          L  +SD+     P   ++   D  +G  D   
Sbjct: 743 DGESSNMMVEEETENQHTEPEKAREKIELGYSSDL---SVPSSGEENWEDDSEGEVDP-L 802

Query: 371 STSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS 410
           +TS  +++ D+ + +   R E +   +    S    T SA  N   FH + LP +S
Sbjct: 803 TTSSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSA--NASSFHDRSLPHNS 839

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BLAST of Csa3G823620 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-20
Identity = 69/232 (29.74%), Postives = 111/232 (47.84%), Query Frame = 1 

Query: 143 PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQV 202
           P  +T EERF  +K+G +   ++ +GRRGVF G I NMH+HWK  E VK+  K    G V
Sbjct: 589 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDV 648

Query: 203 HEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQ 262
            + A  +   SGGI +   ++     I+ +RGKDY +P  + P + LSK++AL +S   Q
Sbjct: 649 KKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQ 708

Query: 263 SLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHS 322
             E++   IA   + ++     +       +   + +        +SD+  + + +D   
Sbjct: 709 RREALSHHIATLNRRVKKLKAELLQMEGVKEEGDVELYAKLDSAYSSDEEDVEDEDD--E 768

Query: 323 AALCLASDVMNQRNPDFSDDESLDIGDGFAD--ACFSTSESDFESDKLDESG 370
           A L    + +  +N D  D  SLD  D  +D    +S  + D + D  +E G
Sbjct: 769 AYLRSFDNSVAVQNGD--DRTSLDGSDANSDDEGDYSDEDDDEDDDNDEEDG 816

[Close]
BLAST of Csa3G823620 vs. Swiss-Prot
Match: CFM3B_ARATH (CRM-domain containing factor CFM3B, chloroplastic OS=Arabidopsis thaliana GN=CFM3B PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-18
Identity = 70/244 (28.69%), Postives = 116/244 (47.54%), Query Frame = 1 

Query: 146 LTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEY 205
           +T EERF  +K+G K   ++ +GRRGVF G + NMH+HWK  E +K+  K        + 
Sbjct: 665 ITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKV 724

Query: 206 AQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLE 265
           A  +   SGGI +   +I     +I YRGKDY +P  + P + L+K++AL +S   Q  E
Sbjct: 725 AMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKRE 784

Query: 266 SVRRFIAIAE---KELELYYRHIALYGDPNDRNPLSILNV-------------PSDNLNS 325
           ++ + I   +   ++L      + L  D  D      L++               D++  
Sbjct: 785 ALIKHIEAIQTRSEQLRAEIEQVELVKDKGDETLYDKLDMAYSSDEETEETDGEEDDVYL 844

Query: 326 DKYQITNMEDSHSAALCLASDVMNQRNPDFSDDES-LDIGDGFADACFSTSESDF---ES 367
           D Y+    +D        A+  +++ + +F  DES  D GD  A +  +T E+ F   ++
Sbjct: 845 DTYEDEGEDDEEGG--IQANGSLSETDVEFGSDESDTDFGDNSASS--TTPETTFVELQN 904

[Close]
BLAST of Csa3G823620 vs. Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-18
Identity = 67/231 (29.00%), Postives = 104/231 (45.02%), Query Frame = 1 

Query: 143 PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQV 202
           P  +T EERF  +K+G +   ++ +GRRGVF G I NMH+HWK  E VK+  K      V
Sbjct: 581 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 640

Query: 203 HEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQ 262
              A  +   SGGI +   ++     I+ +RGK+Y +P  + P + LSK++AL +S   Q
Sbjct: 641 KRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQ 700

Query: 263 SLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHS 322
             +++ R  A   +++E     +    D  ++    +        +SD     +MED   
Sbjct: 701 RHQALSRHFAKLNRKVERLKAELVQMEDVKEQGDEELYAKLDAAYSSDD---EDMEDEDD 760

Query: 323 AALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDFESDKLDESGE 371
            A     D  N+     +DD+  D     AD        D   D  ++ GE
Sbjct: 761 EAYLKRFD--NEVAGATADDDGSDDYTSAADEADYPDSDDEAGDCSEDEGE 806

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BLAST of Csa3G823620 vs. TrEMBL
Match: A0A0A0LF61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823620 PE=4 SV=1)

HSP 1 Score: 825.9 bits (2132), Expect = 2.2e-236
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIK 120
           GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIK
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIK 120

Query: 121 EALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNM 180
           EALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNM
Sbjct: 121 EALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNM 180

Query: 181 HMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVM 240
           HMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVM
Sbjct: 181 HMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVM 240

Query: 241 SPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVP 300
           SPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVP
Sbjct: 241 SPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVP 300

Query: 301 SDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDF 360
           SDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDF
Sbjct: 301 SDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDF 360

Query: 361 ESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS 410
           ESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS
Sbjct: 361 ESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS 409

[Close]
BLAST of Csa3G823620 vs. TrEMBL
Match: V4T7K8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020228mg PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 9.0e-129
Identity = 250/413 (60.53%), Postives = 297/413 (71.91%), Query Frame = 1 

Query: 5   LFHNLRRAPLLFRSSSLNQ-LSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSHGSV 64
           LFHNLR+A      S+LN+ LS R IL  P +V              P   +RN+SHG+V
Sbjct: 6   LFHNLRKA------SALNKFLSLRSILRAPQSVLCPYSHLGPPKPINPSWVWRNVSHGTV 65

Query: 65  NLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL-------- 124
           NLV+S+GKPKFETHEV PPKKEKW+TKK+ K+++ R KQKRK ANKRDPR+L        
Sbjct: 66  NLVISEGKPKFETHEVHPPKKEKWQTKKRFKLKKKREKQKRKDANKRDPRRLTVKGKKKK 125

Query: 125 ---------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQK 184
                          +A+IKEALLIERL+RYEVPKVQGP+VKPH+LTGEERFY KKM QK
Sbjct: 126 QKFANAEDRIKYKLEKAKIKEALLIERLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQK 185

Query: 185 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQI 244
           RSNYVPIGRRGVFGGVILNMHMHWKKHETVKV+CKP KPGQ+HE+A+EIARLSGGIPIQI
Sbjct: 186 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQI 245

Query: 245 IGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYR 304
           IGDDT+IFYRGK+YVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYR
Sbjct: 246 IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYR 305

Query: 305 HIALYGDPNDRNPLSILNVPSD-NLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDD 364
           HIALYGDPN+RNP+SI++ PS     S K+++   +   S    L+       +   S D
Sbjct: 306 HIALYGDPNNRNPMSIMDNPSKVTQESWKFKMVERKSLDSTYDALSPGASEAESD--STD 365

Query: 365 ESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCS 393
           ++L   D   D   STSESD + D   +      +VS S+  E+S T   + S
Sbjct: 366 QTLSELDYIEDEGLSTSESDSQDDSSSDFDSKESQVSSSRMRELSFTMSGSSS 410

[Close]
BLAST of Csa3G823620 vs. TrEMBL
Match: B9T543_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452820 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 7.1e-126
Identity = 240/377 (63.66%), Postives = 284/377 (75.33%), Query Frame = 1 

Query: 27  RPILEIPDTVFSQIKKFPEANISKPLLGFRNLSHGSVNLVVSQGKPKFETHEVDPPKKEK 86
           RPI+  P++VF   +     NI      FRNLSHG VNLV+S GKPKFETHEVDPPKKEK
Sbjct: 4   RPIIYHPESVFPPTRHIIPLNIRNRDWVFRNLSHGRVNLVISDGKPKFETHEVDPPKKEK 63

Query: 87  WKTKKKLKMQRMRLKQKRKAANKRDPRQL---------------------RARIKEALLI 146
           W+TKK+LK+QR R K+KR+AAN+RDPR L                     RA+IKEALL+
Sbjct: 64  WQTKKRLKLQRKREKEKRRAANRRDPRCLTVKRKKQKFANAEERIKYKLERAKIKEALLV 123

Query: 147 ERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWK 206
           ERL+RYEVPKVQGP VKPHDLTGEERF++KKM QK+SNYVP+GRRGVFGGVILNMHMHWK
Sbjct: 124 ERLKRYEVPKVQGPEVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWK 183

Query: 207 KHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVMSPIDT 266
           KHETVKV C  CKPGQVHEYAQEIARLSGGIPIQ+IGDDTIIFYRGK+YVQPEVMSPIDT
Sbjct: 184 KHETVKVICNFCKPGQVHEYAQEIARLSGGIPIQVIGDDTIIFYRGKNYVQPEVMSPIDT 243

Query: 267 LSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPSDNL- 326
           LSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRN LS+L+ P+++  
Sbjct: 244 LSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNLLSVLDSPTNDFK 303

Query: 327 -NSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDFESD 381
            + +  + +N   SH  A  ++    +  + + S+ E  D+    +D+  S ++SD   +
Sbjct: 304 ESGELRKESNYLSSHGFAPGVSETEDDSTDSEVSEIEDEDVSASESDSTDSITDSD--DE 363

[Close]
BLAST of Csa3G823620 vs. TrEMBL
Match: A0A059DBD5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00093 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 9.3e-126
Identity = 246/412 (59.71%), Postives = 286/412 (69.42%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MA +   NL RA  L R SS +  SFRPIL       S  K     N +     FRNLS 
Sbjct: 1   MASTWLRNLLRASSLLRPSSASASSFRPILLSGRPSLSSSKHLLLGNPANTSWSFRNLSF 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL----- 120
           GSVN V+S+GKPKFETHEVDPPKKEKWK KK+ K+Q+ R KQKRKAANK+DPR++     
Sbjct: 61  GSVNFVLSEGKPKFETHEVDPPKKEKWKNKKRFKLQKKREKQKRKAANKKDPRRVGKKRK 120

Query: 121 ---------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQK 180
                          +ARIKE LLIE+L++YEVPKVQGP+VKP +LTGEERF++KKMGQK
Sbjct: 121 QKFANAEEKIKYKLEKARIKETLLIEKLKKYEVPKVQGPVVKPDNLTGEERFFLKKMGQK 180

Query: 181 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQI 240
           +SNY P+GRRGVFGGVILNMHMHWKKHETVKV CKPCKPGQVH+YAQEIARLSGGIPIQI
Sbjct: 181 KSNYAPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHDYAQEIARLSGGIPIQI 240

Query: 241 IGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYR 300
           IGDDTIIFYRG++YVQPE+MSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYR
Sbjct: 241 IGDDTIIFYRGRNYVQPEIMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYR 300

Query: 301 HIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDE 360
           H ALYGDPN RNP++IL  P       K     +E       C   D +++   D+S  E
Sbjct: 301 HTALYGDPNSRNPIAILEGPVQGTMGSK----EVESLEKERQCATDDSLSR---DYSPLE 360

Query: 361 SLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCS 393
           S      F+D     SE++ E    D+   G  +     T +IS+  +   S
Sbjct: 361 S-----DFSD----LSETESEDGSEDDMSIGESDAEYGHTHDISNERVGNFS 396

[Close]
BLAST of Csa3G823620 vs. TrEMBL
Match: A0A0D2S106_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G229000 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 3.5e-125
Identity = 244/395 (61.77%), Postives = 288/395 (72.91%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MA +LF +LRRA  L  S S+ + SF   L    T+FS  K     N +      R+LSH
Sbjct: 1   MATALFRSLRRASRL--SDSILRHSFS--LSSQATIFSPSKLLVLPNPTTLPWVSRHLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL----- 120
           G+VNLV+SQGKPKFETH+ DPPKKEKWKTKK+ K+Q+ R K+KRKAAN+RDPR+L     
Sbjct: 61  GTVNLVISQGKPKFETHQFDPPKKEKWKTKKRFKLQKKREKEKRKAANRRDPRRLGLTRK 120

Query: 121 -----------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
                            +A++KE LL+ERL+RYEV KVQGP+VKPH+LTGEERFY+KKM 
Sbjct: 121 PKKKFANAEERIKYKLDKAKVKEGLLLERLKRYEVSKVQGPVVKPHELTGEERFYMKKMA 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRG+FGGVILNMHMHWKKHETVKV CKPCKPGQVH+YA EIARLSGGIP+
Sbjct: 181 QKRSNYVPIGRRGIFGGVILNMHMHWKKHETVKVICKPCKPGQVHDYADEIARLSGGIPV 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTI+FYRGK+YVQPEVMSP+DTLSKKRALEKSKYEQSL+SVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIVFYRGKNYVQPEVMSPVDTLSKKRALEKSKYEQSLDSVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRH+ALYGDPN+RNP+SIL+ P+     DK   T  +DSH       S  ++ +  D  D
Sbjct: 301 YRHVALYGDPNNRNPISILDSPT---REDKETETLEKDSHDLTPTRFSSGISAKKVDPID 360

Query: 361 DESLDIGDGF--ADACFSTSESDFESDKLDESGEG 372
           +E  +  D     D     S+S+ E    DE  EG
Sbjct: 361 EELSETEDDLKGEDLPMRGSDSEKEVSCFDEESEG 388

[Close]
BLAST of Csa3G823620 vs. TAIR10
Match: AT2G28480.1 (AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 398.7 bits (1023), Expect = 4.4e-111
Identity = 220/386 (56.99%), Postives = 266/386 (68.91%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MA +    LR+A    RSS    +S R +L I    +     F     ++P+   RN SH
Sbjct: 1   MAIAFARGLRKASSFLRSSYPLLISSR-LLPISQEFYDSTLTFVLP--TRPIC--RNFSH 60

Query: 61  G--SVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL--- 120
           G  +VNLV+S+GKPKFET E+DPPKK KW TKK+LK++R + +++R AAN++DPR+L   
Sbjct: 61  GYGTVNLVISEGKPKFETRELDPPKKYKWLTKKRLKLKRKKEREERNAANRKDPRRLTVK 120

Query: 121 ------------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKM 180
                             +A+IKEALLIERL+RYEV KVQGP V+PH++TGEERFY+KKM
Sbjct: 121 GKKKKFVNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKM 180

Query: 181 GQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIP 240
           GQKRSNYVPIGRRGVFGGVILNMH+HWKKHETVKV C   KPGQV +YA+E+A+LSGG+P
Sbjct: 181 GQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVP 240

Query: 241 IQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 300
           + IIGDDTIIFYRGK YVQP+VMSPIDTLSKKRA EKSKYEQSLESVR FIAIAEKELEL
Sbjct: 241 VNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELEL 300

Query: 301 YYRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360
           YYRH+ALY DPN+RNPLSIL    D+  S+  Q       H     L+    +  + D  
Sbjct: 301 YYRHVALYDDPNNRNPLSIL----DDSPSESRQ------HHENEFFLSCSDTDSSSEDED 360

Query: 361 DDESLDIGDGFADACFSTSESDFESD 364
           +DE L   D  + +  S  E   ES+
Sbjct: 361 EDEELCELDNGSSSSSSAKEELSESE 371

[Close]
BLAST of Csa3G823620 vs. TAIR10
Match: AT4G13070.1 (AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 232.3 bits (591), Expect = 5.5e-61
Identity = 128/259 (49.42%), Postives = 167/259 (64.48%), Query Frame = 1 

Query: 52  LLGFRNLSHGSVNLVVSQGKPKFETHEVD-------PPKKEK-WKTKK---KLKMQRMR- 111
           L   R LS+ ++ L       +F  + V        P +KEK WK  K   K K+  +R 
Sbjct: 69  LFSRRYLSNSTIELRTDDNVVRFAFNNVSSSGNNVVPTRKEKKWKRAKLSRKAKVNELRF 128

Query: 112 --LKQKRKAANKRDPRQLR-----ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERF 171
             LK K+K  +     ++R     A+ KE  LIE+LR+Y+VPK       P  LT EE+ 
Sbjct: 129 YRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQH 188

Query: 172 YIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPC-KPGQVHEYAQEIAR 231
           Y+K+ G+KR N+V +GRRGVFGGV+LN+H+HWKKHETVKV CKPC KPGQVHEYA+E+AR
Sbjct: 189 YLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELAR 248

Query: 232 LSGGIPIQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIA 291
           LS GI I +  ++TI+ YRGK+YV+PEVMSP+DTLSK +ALEK +YEQSLE    FI   
Sbjct: 249 LSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKL 308

[Close]
BLAST of Csa3G823620 vs. TAIR10
Match: AT3G25440.1 (AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 166.8 bits (421), Expect = 2.8e-41
Identity = 91/194 (46.91%), Postives = 124/194 (63.92%), Query Frame = 1 

Query: 86  KWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIKEALLIERLRRYEVPKVQGPMVKPHD 145
           +WK KK+ +    R+  + K  NK      +AR KE  L+E +++ E  +       P  
Sbjct: 125 RWKKKKEFE----RMTSEEKILNKLR----KARKKEERLMETMKKLEPSESAETTHDPEI 184

Query: 146 LTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEY 205
           LT EE FY  KMG K  NYVP+GRRG++ GVILNMH+HWKKH+T++V  K   P +V E 
Sbjct: 185 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 244

Query: 206 AQEIARLSGGIPIQIIGDDTIIFYRGKDYVQP--EVMSPIDTLSKKRALEKSKYEQSLES 265
           A E+ARL+GGI + +   +TII YRGK+YVQP  E+MSP  TL +K+AL+KSK   +L +
Sbjct: 245 AVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRA 304

Query: 266 VRRFIAIAEKELEL 278
           VR++I   E+EL+L
Sbjct: 305 VRKYIPRLEQELQL 310

[Close]
BLAST of Csa3G823620 vs. TAIR10
Match: AT3G27550.1 (AT3G27550.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-39
Identity = 85/194 (43.81%), Postives = 128/194 (65.98%), Query Frame = 1 

Query: 83  KKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL-RARIKEALLIERLRRYEVPKVQGPMV 142
           +KE  KT ++++  + +LK+K     +R    L RA+ K ALL+++L++Y++P++  P+ 
Sbjct: 29  RKESGKTLREIRRAK-KLKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVH 88

Query: 143 KPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQ 202
            P   T E+    KK+G K  NYVP+G RGVFGGV+ NMHMHWK HETV+V C      +
Sbjct: 89  DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 148

Query: 203 VHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSL 262
           + E A  IARLSGG+ I I    TII +RG++Y QP+ + P++TL+K++AL K+++EQ+L
Sbjct: 149 IKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQAL 208

Query: 263 ESVRRFIAIAEKEL 276
           ES +  I   E++L
Sbjct: 209 ESQKLNIKKTEQQL 221

[Close]
BLAST of Csa3G823620 vs. TAIR10
Match: AT3G01370.1 (AT3G01370.1 CRM family member 2)

HSP 1 Score: 102.1 bits (253), Expect = 8.6e-22
Identity = 88/356 (24.72%), Postives = 160/356 (44.94%), Query Frame = 1 

Query: 71  KPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKR--KAANKRDPRQLRARIKEALLIER- 130
           KP+    +++   K++   K  ++  +M+ +Q+   +A  ++   +L   +++    E+ 
Sbjct: 503 KPRAVKEDIELEAKDQ---KDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKV 562

Query: 131 ---LRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHW 190
              L   E P++    +    +T +E++ ++K+G K   ++ +GRRGVF G I NMH+HW
Sbjct: 563 LADLENRESPQLSD--IDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHW 622

Query: 191 KKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMS 250
           K  E VK+ C        H+ A+ +   SGGI +    +     II YRGK+Y +P+ + 
Sbjct: 623 KYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLR 682

Query: 251 PIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPS 310
           P   LSK+ AL++S   Q  +S++  +      +E   R +      N+          S
Sbjct: 683 PQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNE--------TWS 742

Query: 311 DNLNSDKYQITNMEDSHS--------AALCLASDVMNQRNPDFSDDESLDIGDGFADACF 370
           D  +S+       E+ H+          L  +SD+     P   ++   D  +G  D   
Sbjct: 743 DGESSNMMVEEETENQHTEPEKAREKIELGYSSDL---SVPSSGEENWEDDSEGEVDP-L 802

Query: 371 STSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS 410
           +TS  +++ D+ + +   R E +   +    S    T SA  N   FH + LP +S
Sbjct: 803 TTSSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSA--NASSFHDRSLPHNS 839

[Close]
BLAST of Csa3G823620 vs. NCBI nr
Match: gi|700204381|gb|KGN59514.1| (hypothetical protein Csa_3G823620 [Cucumis sativus])

HSP 1 Score: 825.9 bits (2132), Expect = 3.2e-236
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIK 120
           GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIK
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRARIK 120

Query: 121 EALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNM 180
           EALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNM
Sbjct: 121 EALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNM 180

Query: 181 HMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVM 240
           HMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVM
Sbjct: 181 HMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVM 240

Query: 241 SPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVP 300
           SPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVP
Sbjct: 241 SPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVP 300

Query: 301 SDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDF 360
           SDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDF
Sbjct: 301 SDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDF 360

Query: 361 ESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS 410
           ESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS
Sbjct: 361 ESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS 409

[Close]
BLAST of Csa3G823620 vs. NCBI nr
Match: gi|449437795|ref|XP_004136676.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus])

HSP 1 Score: 813.1 bits (2099), Expect = 2.1e-232
Identity = 409/431 (94.90%), Postives = 409/431 (94.90%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLR---- 120
           GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLR    
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRVKGK 120

Query: 121 ------------------ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
                             ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG
Sbjct: 121 KKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360

Query: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 410
           DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC
Sbjct: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 420

[Close]
BLAST of Csa3G823620 vs. NCBI nr
Match: gi|659085302|ref|XP_008443348.1| (PREDICTED: uncharacterized protein LOC103486957 [Cucumis melo])

HSP 1 Score: 761.5 bits (1965), Expect = 7.4e-217
Identity = 386/432 (89.35%), Postives = 396/432 (91.67%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRA LLFRSSSLNQLSFRPIL IPDTVFSQIK FPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL----- 120
           GSVNLVV+QGKPKFETH VDPPKKEKWKTKKKLKMQRMR KQKRKAANKRDPRQL     
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWKTKKKLKMQRMRSKQKRKAANKRDPRQLRVKGK 120

Query: 121 -----------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
                            RARIKEALLIERL+RYEVP+VQGP+VKPH+LT EERFYIKKMG
Sbjct: 121 KKQKFPNAAERIKNKLERARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGK+YVQPEVMSPI TLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360
           YRHIALYGDPNDRNPLSILNVPSDNL NSDK+QITNMEDSHSAALCL SDVMNQRNPDFS
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFS 360

Query: 361 DDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNK 410
           DDESLDIGD F DACFSTSESDFESDKLDES +GR+EVSVSQTEE+ STTMNTCSAF NK
Sbjct: 361 DDESLDIGDEFGDACFSTSESDFESDKLDESDDGRIEVSVSQTEEMFSTTMNTCSAFQNK 420

[Close]
BLAST of Csa3G823620 vs. NCBI nr
Match: gi|802554972|ref|XP_012065185.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas])

HSP 1 Score: 492.7 bits (1267), Expect = 6.4e-136
Identity = 264/417 (63.31%), Postives = 307/417 (73.62%), Query Frame = 1 

Query: 1   MAKSLFHNLRRAPLLFR-SSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLS 60
           MA +LF  LRRA LL + SSSLN  +FRPI +  ++VFSQ +   + N+  P L  RNLS
Sbjct: 1   MAGALFRCLRRASLLVKPSSSLNPFTFRPIFDYAESVFSQSRVISQLNLPNPSLVLRNLS 60

Query: 61  HGSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL---- 120
           HG+VNLV+S+GKPKFE HEVDPPKKEKW+TKK+LKMQR R KQKRK ANKRDPR+L    
Sbjct: 61  HGNVNLVISEGKPKFEIHEVDPPKKEKWQTKKRLKMQRKREKQKRKDANKRDPRRLTVKR 120

Query: 121 ------------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKM 180
                             RA+IKEA LIERL+RYEVPKVQGP VKPHDLTGEERF++KKM
Sbjct: 121 KKKQKFANAEERIKFKLERAKIKEAALIERLKRYEVPKVQGPEVKPHDLTGEERFFVKKM 180

Query: 181 GQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIP 240
           GQK+SNYVPIGRRGVFGGVILNMHMHWKKHETVKV CK CKPGQ+HEYAQEIARLSGGIP
Sbjct: 181 GQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICKHCKPGQLHEYAQEIARLSGGIP 240

Query: 241 IQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 300
           I  IGDDT+IFYRGK+YVQP+VMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL
Sbjct: 241 IHFIGDDTVIFYRGKNYVQPKVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 300

Query: 301 YYRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDF 360
           YYRHIALYGDPN+RNPLSILN  S++   S K +  N   S        S  +++   D 
Sbjct: 301 YYRHIALYGDPNNRNPLSILNTSSNDFKESGKPKNKNSNLSFYG----TSPGVSETEVDS 360

Query: 361 SDDESLDIGDGFADACFSTSESDF--------ESDKLDESGEGRMEVSVSQTEEISS 386
           +D +  +I D F D   S SESD         + +K+D   +  +    S+ + +S+
Sbjct: 361 TDGDLSEIEDDFEDEDLSASESDSVGRITGWNDKNKIDNENQDYLRKMYSKHDYLSN 413

[Close]
BLAST of Csa3G823620 vs. NCBI nr
Match: gi|567901040|ref|XP_006443008.1| (hypothetical protein CICLE_v10020228mg [Citrus clementina])

HSP 1 Score: 468.4 bits (1204), Expect = 1.3e-128
Identity = 250/413 (60.53%), Postives = 297/413 (71.91%), Query Frame = 1 

Query: 5   LFHNLRRAPLLFRSSSLNQ-LSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSHGSV 64
           LFHNLR+A      S+LN+ LS R IL  P +V              P   +RN+SHG+V
Sbjct: 6   LFHNLRKA------SALNKFLSLRSILRAPQSVLCPYSHLGPPKPINPSWVWRNVSHGTV 65

Query: 65  NLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQL-------- 124
           NLV+S+GKPKFETHEV PPKKEKW+TKK+ K+++ R KQKRK ANKRDPR+L        
Sbjct: 66  NLVISEGKPKFETHEVHPPKKEKWQTKKRFKLKKKREKQKRKDANKRDPRRLTVKGKKKK 125

Query: 125 ---------------RARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQK 184
                          +A+IKEALLIERL+RYEVPKVQGP+VKPH+LTGEERFY KKM QK
Sbjct: 126 QKFANAEDRIKYKLEKAKIKEALLIERLKRYEVPKVQGPVVKPHELTGEERFYFKKMAQK 185

Query: 185 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQI 244
           RSNYVPIGRRGVFGGVILNMHMHWKKHETVKV+CKP KPGQ+HE+A+EIARLSGGIPIQI
Sbjct: 186 RSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPSKPGQIHEFAEEIARLSGGIPIQI 245

Query: 245 IGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYR 304
           IGDDT+IFYRGK+YVQPE+MSPIDTLSKK+ALEKSKYEQSLESVRRFIA+AEKELELYYR
Sbjct: 246 IGDDTVIFYRGKNYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAMAEKELELYYR 305

Query: 305 HIALYGDPNDRNPLSILNVPSD-NLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDD 364
           HIALYGDPN+RNP+SI++ PS     S K+++   +   S    L+       +   S D
Sbjct: 306 HIALYGDPNNRNPMSIMDNPSKVTQESWKFKMVERKSLDSTYDALSPGASEAESD--STD 365

Query: 365 ESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCS 393
           ++L   D   D   STSESD + D   +      +VS S+  E+S T   + S
Sbjct: 366 QTLSELDYIEDEGLSTSESDSQDDSSSDFDSKESQVSSSRMRELSFTMSGSSS 410

The following BLAST results are available for this feature:
BLAST of Csa3G823620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y3544_ARATH5.0e-4046.91Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid... [more]
CFM2_ARATH1.5e-2024.72CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2... [more]
CFM3_ORYSJ2.6e-2029.74CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
CFM3B_ARATH1.4e-1828.69CRM-domain containing factor CFM3B, chloroplastic OS=Arabidopsis thaliana GN=CFM... [more]
CFM3_MAIZE3.2e-1829.00CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CF... [more]
BLAST of Csa3G823620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF61_CUCSA2.2e-236100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823620 PE=4 SV=1[more]
V4T7K8_9ROSI9.0e-12960.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020228mg PE=4 SV=1[more]
B9T543_RICCO7.1e-12663.66Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452820 PE=4 SV=1[more]
A0A059DBD5_EUCGR9.3e-12659.71Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00093 PE=4 SV=1[more]
A0A0D2S106_GOSRA3.5e-12561.77Uncharacterized protein OS=Gossypium raimondii GN=B456_006G229000 PE=4 SV=1[more]
BLAST of Csa3G823620 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28480.14.4e-11156.99 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT4G13070.15.5e-6149.42 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G25440.12.8e-4146.91 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G27550.14.5e-3943.81 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G01370.18.6e-2224.72 CRM family member 2[more]
BLAST of Csa3G823620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204381|gb|KGN59514.1|3.2e-236100.00hypothetical protein Csa_3G823620 [Cucumis sativus][more]
gi|449437795|ref|XP_004136676.1|2.1e-23294.90PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
gi|659085302|ref|XP_008443348.1|7.4e-21789.35PREDICTED: uncharacterized protein LOC103486957 [Cucumis melo][more]
gi|802554972|ref|XP_012065185.1|6.4e-13663.31PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
gi|567901040|ref|XP_006443008.1|1.3e-12860.53hypothetical protein CICLE_v10020228mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102992cucumber EST collection version 3.0transcribed_cluster
CU119260cucumber EST collection version 3.0transcribed_cluster
CU133958cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G823620.1Csa3G823620.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU119260CU119260transcribed_cluster
CU102992CU102992transcribed_cluster
CU133958CU133958transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainGENE3DG3DSA:3.30.110.60coord: 146..240
score: 1.6
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 146..230
score: 2.6
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 146..230
score: 5.9
IPR001890RNA-binding, CRM domainPROFILEPS51295CRMcoord: 144..241
score: 18
IPR001890RNA-binding, CRM domainunknownSSF75471YhbY-likecoord: 146..240
score: 3.53
NoneNo IPR availableunknownCoilCoilcoord: 90..110
scor
NoneNo IPR availablePANTHERPTHR31426FAMILY NOT NAMEDcoord: 18..389
score: 1.8E
NoneNo IPR availablePANTHERPTHR31426:SF2SUBFAMILY NOT NAMEDcoord: 18..389
score: 1.8E