CU118863 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118863
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 19377119 .. 19377594 (+)
Sequence length	391

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTATTGGCTCATTCGTCTTTTTGTCCTTGGGAACGTTTCGCCTAAGATCCGTATTGCACCTTCTAAGCTCAGCTTCCCTTCTCTTACCAAGAGAGCGAGATTTTTGGATTTGGGATTTCACTTCATCAATTATAAGCATCATTTCAGATATCCTTTGATCTTTGCTTCCATCGTTTCCTTTTCATGGAAACCTCTTTGTACTCATGGATTAGTTTCAATAAAAGCCTCACATTGGTAGATACTCCGACAAAGTTTTGATCAATATGATGTTGTCGTGGACTGATCAAGGTAGTATTTGCTAATTCAGGAGAGGACAAAGCTCGAACACGGTTGATGTCTATAGATTCCATGAGGAAAAGATTGAAAAAGGAAAAGCAGGAAAGTAACCAAA

Library


Library category	ESTs
gynoecious flower library	2

Homology

[Close]

BLAST of CU118863 vs. TrEMBL
Match: A0A0A0LVR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537380 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.6e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI
Sbjct: 57  KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 116

Query: 62   121
           
Sbjct: 117  116

Query: 122  181
           
Sbjct: 177  116

[Close]

BLAST of CU118863 vs. TrEMBL
Match: A0A0A0LVR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537380 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -3


Query: 180 MESIDINRVRALSSPELANTTLISPRQHHIDQNFVGVSTNVRLLLKLIHEYKEVSMK 239
           MESIDINRVRALSSPELANTTLISPRQHHIDQNFVGVSTNVRLLLKLIHEYKEVSMK
Sbjct: 1   MESIDINRVRALSSPELANTTLISPRQHHIDQNFVGVSTNVRLLLKLIHEYKEVSMK 57

Query: 240  299
           
Sbjct: 61   57

Query: 300  351
           
Sbjct: 121  57

HSP 2 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           K ND  K QR++ M+ IID+VK++IQKS+S+G+R  AELRRCNTDLR NVP+DK+  EPI
Sbjct: 54  KENDDRKTQRVAGMITIIDDVKTRIQKSQSIGRR--AELRRCNTDLRPNVPRDKRPTEPI 111

Query: 62   121
           
Sbjct: 114  111

Query: 122  181
           
Sbjct: 174  111

[Close]

BLAST of CU118863 vs. TrEMBL
Match: M5WHV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009002mg PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-02
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = -3


Query: 180 INRVRALSSPEL----ANTTLISPRQHHIDQNFVGVSTNVRLLLKLIHEYKEVSMK 239
           +NR+RA SSP +    A++T  +P++   D +F G++TNV+LLLKLIH++ E   K
Sbjct: 1   MNRIRAFSSPAVLPLPASST--TPKERPEDHSFDGIATNVKLLLKLIHDHNEACTK 54

Query: 240  299
           
Sbjct: 61   54

Query: 300  336
           
Sbjct: 121  54

HSP 2 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = -1


Query: 2   DGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           D  K QR++ MM II+ +K++IQ+S+++G+R  AELRRCNTDLR N P+DKK +EPI
Sbjct: 55  DERKAQRVAGMMSIIENIKTRIQESQTVGRR--AELRRCNTDLRANAPRDKKAHEPI 109

Query: 62   121
           
Sbjct: 115  109

Query: 122  173
           
Sbjct: 175  109

[Close]

BLAST of CU118863 vs. TrEMBL
Match: W9R1Z4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019773 PE=4 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 4.7e+01
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = -3


Query: 192 VRALSSPELANTTLISPRQHHI----DQNFVGVSTNVRLLLKLIHEYKE 251
           +RA SSPEL     + P ++ I    D +  G++TNV+LLLK+I ++ E
Sbjct: 4   LRAFSSPEL-----LPPEKNQIERPGDHSLEGIATNVKLLLKIIQDHNE 47

Query: 252  311
           
Sbjct: 64   47

Query: 312  327
           
Sbjct: 124  47

HSP 2 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRN-VPKDKKTNEP 61
           K  D  K QRI+ M+ I+D+VK++IQKS+ + KR  AELRRCNTDLR N  P+DKK  EP
Sbjct: 51  KDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNHAPRDKKLCEP 110

Query: 62  I 121
           I
Sbjct: 111 I 111

Query: 122  181
           
Sbjct: 171  111

[Close]

BLAST of CU118863 vs. TrEMBL
Match: V4UDJ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015995mg PE=4 SV=1)

HSP 1 Score: 38.9 bits (89), Expect = 5.6e+00
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = -3


Query: 180 RALSSPELANTTLISPRQHHIDQNFVGVSTNVRLLLKLIHEYKEVSMK 239
           RA SSP+LA  +  S      D +F G++ NV+LLLKLI ++ E S K
Sbjct: 5   RAFSSPDLAKASS-SNADRPEDLSFEGIAANVKLLLKLIQDHTEASTK 51

Query: 240  299
           
Sbjct: 65   51

Query: 300  324
           
Sbjct: 125  51

HSP 2 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRN-VPKDKKTNEP 61
           K  D  K QRI+ M+ I+D+VK++IQKS+ + KR  AELRRCNTDLR N  P+DKK  EP
Sbjct: 51  KDQDHRKPQRIAGMITILDDVKTRIQKSQPVAKRSVAELRRCNTDLRPNRAPRDKKLCEP 110

Query: 62  I 121
           I
Sbjct: 111 I 111

Query: 122  181
           
Sbjct: 171  111

[Close]

BLAST of CU118863 vs. NCBI nr
Match: gi|449435874|ref|XP_004135719.1| (PREDICTED: paramyosin [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI
Sbjct: 57  KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 116

Query: 62   121
           
Sbjct: 117  116

Query: 122  181
           
Sbjct: 177  116

[Close]

BLAST of CU118863 vs. NCBI nr
Match: gi|659068507|ref|XP_008444778.1| (PREDICTED: probable kinetochore protein nuf2 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-20
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           KGNDGSK+QRISEMM IIDEVKSQI KS+SLGKR+EA LRRCNTDLRRNVPKDKKTNEPI
Sbjct: 56  KGNDGSKNQRISEMMQIIDEVKSQILKSQSLGKRKEAALRRCNTDLRRNVPKDKKTNEPI 115

Query: 62   121
           
Sbjct: 116  115

Query: 122  181
           
Sbjct: 176  115

[Close]

BLAST of CU118863 vs. NCBI nr
Match: gi|645238160|ref|XP_008225545.1| (PREDICTED: flagellar attachment zone protein 1 [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           K ND  K QR++ M+ IID+VK++IQKS+S+G+R  AELRRCNTDLR NVP+DK+  EPI
Sbjct: 54  KENDDRKTQRVAGMITIIDDVKTRIQKSQSIGRR--AELRRCNTDLRPNVPRDKRPTEPI 111

Query: 62   121
           
Sbjct: 114  111

Query: 122  181
           
Sbjct: 174  111

[Close]

BLAST of CU118863 vs. NCBI nr
Match: gi|595863841|ref|XP_007211662.1| (hypothetical protein PRUPE_ppa009002mg [Prunus persica])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           K ND  K QR++ M+ IID+VK++IQKS+S+G+R  AELRRCNTDLR NVP+DK+  EPI
Sbjct: 54  KENDDRKTQRVAGMITIIDDVKTRIQKSQSIGRR--AELRRCNTDLRPNVPRDKRPTEPI 111

Query: 62   121
           
Sbjct: 114  111

Query: 122  181
           
Sbjct: 174  111

[Close]

BLAST of CU118863 vs. NCBI nr
Match: gi|694367996|ref|XP_009362308.1| (PREDICTED: uncharacterized protein LOC103952449 [Pyrus x bretschneideri])

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = -1


Query: 2   KGNDGSKDQRISEMMLIIDEVKSQIQKSRSLGKRREAELRRCNTDLRRNVPKDKKTNEPI 61
           K ND  K QR++ MM IID+VK++IQKS+++G+R  AELRRCNTDL  NVP+DK+  EPI
Sbjct: 53  KDNDDRKMQRVAGMMTIIDDVKTRIQKSQTVGRR--AELRRCNTDLGPNVPRDKRPPEPI 110

Query: 62   121
           
Sbjct: 113  110

Query: 122  181
           
Sbjct: 173  110

The following BLAST results are available for this feature:

BLAST of CU118863 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR7_CUCSA	8.6e-25	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537380 PE=4 SV=1	[more]
A0A0A0LVR7_CUCSA	1.8e-22	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537380 PE=4 SV=1	[more]
M5WHV6_PRUPE	1.6e-02	44.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009002mg PE=4 SV=1	[more]
W9R1Z4_9ROSA	4.7e+01	40.82	Uncharacterized protein OS=Morus notabilis GN=L484_019773 PE=4 SV=1	[more]
V4UDJ7_9ROSI	5.6e+00	45.83	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015995mg PE=4 SV=1	[more]

BLAST of CU118863 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435874\|ref\|XP_004135719.1\|	1.4e-23	100.00	PREDICTED: paramyosin [Cucumis sativus]	[more]
gi\|659068507\|ref\|XP_008444778.1\|	5.3e-20	90.00	PREDICTED: probable kinetochore protein nuf2 [Cucumis melo]	[more]
gi\|645238160\|ref\|XP_008225545.1\|	1.7e-10	63.33	PREDICTED: flagellar attachment zone protein 1 [Prunus mume]	[more]
gi\|595863841\|ref\|XP_007211662.1\|	1.7e-10	63.33	hypothetical protein PRUPE_ppa009002mg [Prunus persica]	[more]
gi\|694367996\|ref\|XP_009362308.1\|	2.5e-09	61.67	PREDICTED: uncharacterized protein LOC103952449 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G537380	Csa1G537380	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0064517	G0064517	EST
G0094337	G0094337	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38378	FAMILY NOT NAMED	coord: 19..130 score: 4.7