CU118361 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118361
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	15-cis-zeta-carotene isomerase
Location	Chr4 : 2027758 .. 2028210 (+)
Sequence length	310

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCATTTTTGCCATTGTCCATAGTGGTTTGGCCAGTCTCCGAGATCAGGGCGAGAAGCTTGTCGGGGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCCTACTGCATCAACTTGTGTGGCTTAGCTCGTTTGTCTCCTTCATCTTTCTCTATCCTTCAACTTTTAATCTGCTGGAGGTTGCAGCAGTTGATAAACCAAAAATGCACCTTTGGGAAACAGGCAT

Library


Library category	ESTs
fruit (8DPP) library	2

Homology

[Close]

BLAST of CU118361 vs. Swiss-Prot
Match: ZCIS_ARATH (15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-46
Identity = 86/102 (84.31%), Postives = 94/102 (92.16%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAIVHSGLASLRD GEKL+GERAFRVLFAG+SLPLA+ST+VYFINHRYDG QLWQLQ V
Sbjct: 146 IFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGV 205

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +H+ +W+++FVSF FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 206 PGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 247

Query: 123  182
           
Sbjct: 266  247

Query: 183  242
           
Sbjct: 326  247

Query: 243  302
           
Sbjct: 386  247

Query: 303  309
           
Sbjct: 446  247

[Close]

BLAST of CU118361 vs. Swiss-Prot
Match: ZCIS_MAIZE (15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-44
Identity = 78/102 (76.47%), Postives = 92/102 (90.20%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFA+VHSG+ASLR+ GEK+VGER +RVLFAG+SLPLAV+T+VYFINHRYDG QLWQ+Q +
Sbjct: 145 IFAVVHSGMASLRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGI 204

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
             +H+L+W SSF+SF FLYPSTFNLLEVAAVDKPK+H+WETG
Sbjct: 205 TGIHELLWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWETG 246

Query: 123  182
           
Sbjct: 265  246

Query: 183  242
           
Sbjct: 325  246

Query: 243  302
           
Sbjct: 385  246

Query: 303  309
           
Sbjct: 445  246

[Close]

BLAST of CU118361 vs. TrEMBL
Match: A0A0A0KXF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015720 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV
Sbjct: 151 IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 210

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 211 PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 252

Query: 123  182
           
Sbjct: 271  252

Query: 183  242
           
Sbjct: 331  252

Query: 243  302
           
Sbjct: 391  252

Query: 303  309
           
Sbjct: 451  252

[Close]

BLAST of CU118361 vs. TrEMBL
Match: B9IA93_POPTR (Sodium symporter-related family protein OS=Populus trichocarpa GN=POPTR_0014s14400g PE=4 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-46
Identity = 91/102 (89.22%), Postives = 98/102 (96.08%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFA VHSGLASLRD GEKL+GERAFRVLFAGVSLPLAVSTVVYFINHRYDG+QLW+LQS 
Sbjct: 153 IFATVHSGLASLRDMGEKLIGERAFRVLFAGVSLPLAVSTVVYFINHRYDGIQLWELQSA 212

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +HQLVWLS+F+SF+FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 213 PAVHQLVWLSNFISFLFLYPSTFNLLEVAAVDKPKMHLWETG 254

Query: 123  182
           
Sbjct: 273  254

Query: 183  242
           
Sbjct: 333  254

Query: 243  302
           
Sbjct: 393  254

Query: 303  309
           
Sbjct: 453  254

[Close]

BLAST of CU118361 vs. TrEMBL
Match: A5BX06_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038450 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-46
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAI HSGLASLRD GEKL+GERAFRVLFAG SLPLAVSTVVYFINHRYDG+QLWQLQSV
Sbjct: 120 IFAIAHSGLASLRDSGEKLIGERAFRVLFAGTSLPLAVSTVVYFINHRYDGLQLWQLQSV 179

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +HQLVW SSFVSF FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 180 PGIHQLVWFSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 221

Query: 123  182
           
Sbjct: 240  221

Query: 183  242
           
Sbjct: 300  221

Query: 243  302
           
Sbjct: 360  221

Query: 303  309
           
Sbjct: 420  221

[Close]

BLAST of CU118361 vs. TrEMBL
Match: A0A068V1H6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042011001 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-46
Identity = 91/102 (89.22%), Postives = 97/102 (95.10%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFA+VHSGLASLRD GEK+VGERA+RVLFAG+SLPLAVSTVVYFINHRYDGVQLWQLQ V
Sbjct: 156 IFAVVHSGLASLRDTGEKIVGERAYRVLFAGISLPLAVSTVVYFINHRYDGVQLWQLQGV 215

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P LH L+WLS+FVSF FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 216 PWLHHLLWLSNFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 257

Query: 123  182
           
Sbjct: 276  257

Query: 183  242
           
Sbjct: 336  257

Query: 243  302
           
Sbjct: 396  257

Query: 303  309
           
Sbjct: 456  257

[Close]

BLAST of CU118361 vs. TrEMBL
Match: W9RMG1_9ROSA (15-cis-zeta-carotene isomerase OS=Morus notabilis GN=L484_012007 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-46
Identity = 92/102 (90.20%), Postives = 97/102 (95.10%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFA+VHSGLASLRD GEKL+GERAFRVLFAGVSLPLAVSTVVYFINHRYDG QLWQLQS+
Sbjct: 184 IFALVHSGLASLRDTGEKLIGERAFRVLFAGVSLPLAVSTVVYFINHRYDGQQLWQLQSI 243

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +HQLVWLSSF+SF  LYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 244 PGVHQLVWLSSFISFFLLYPSTFNLLEVAAVDKPKMHLWETG 285

Query: 123  182
           
Sbjct: 304  285

Query: 183  242
           
Sbjct: 364  285

Query: 243  302
           
Sbjct: 424  285

Query: 303  309
           
Sbjct: 484  285

[Close]

BLAST of CU118361 vs. NCBI nr
Match: gi|449468784|ref|XP_004152101.1| (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV
Sbjct: 151 IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 210

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 211 PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 252

Query: 123  182
           
Sbjct: 271  252

Query: 183  242
           
Sbjct: 331  252

Query: 243  302
           
Sbjct: 391  252

Query: 303  309
           
Sbjct: 451  252

[Close]

BLAST of CU118361 vs. NCBI nr
Match: gi|659108018|ref|XP_008453974.1| (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 4.3e-49
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV
Sbjct: 149 IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 208

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P LHQLVWLSSFVSF FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 209 PGLHQLVWLSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 250

Query: 123  182
           
Sbjct: 269  250

Query: 183  242
           
Sbjct: 329  250

Query: 243  302
           
Sbjct: 389  250

Query: 303  309
           
Sbjct: 449  250

[Close]

BLAST of CU118361 vs. NCBI nr
Match: gi|566204260|ref|XP_002321091.2| (sodium symporter-related family protein [Populus trichocarpa])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 91/102 (89.22%), Postives = 98/102 (96.08%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFA VHSGLASLRD GEKL+GERAFRVLFAGVSLPLAVSTVVYFINHRYDG+QLW+LQS 
Sbjct: 153 IFATVHSGLASLRDMGEKLIGERAFRVLFAGVSLPLAVSTVVYFINHRYDGIQLWELQSA 212

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +HQLVWLS+F+SF+FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 213 PAVHQLVWLSNFISFLFLYPSTFNLLEVAAVDKPKMHLWETG 254

Query: 123  182
           
Sbjct: 273  254

Query: 183  242
           
Sbjct: 333  254

Query: 243  302
           
Sbjct: 393  254

Query: 303  309
           
Sbjct: 453  254

[Close]

BLAST of CU118361 vs. NCBI nr
Match: gi|147865106|emb|CAN79408.1| (hypothetical protein VITISV_038450 [Vitis vinifera])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAI HSGLASLRD GEKL+GERAFRVLFAG SLPLAVSTVVYFINHRYDG+QLWQLQSV
Sbjct: 120 IFAIAHSGLASLRDSGEKLIGERAFRVLFAGTSLPLAVSTVVYFINHRYDGLQLWQLQSV 179

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +HQLVW SSFVSF FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 180 PGIHQLVWFSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 221

Query: 123  182
           
Sbjct: 240  221

Query: 183  242
           
Sbjct: 300  221

Query: 243  302
           
Sbjct: 360  221

Query: 303  309
           
Sbjct: 420  221

[Close]

BLAST of CU118361 vs. NCBI nr
Match: gi|296089624|emb|CBI39443.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 192.2 bits (487), Expect = 4.5e-46
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 3


Query: 3   IFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSV 62
           IFAI HSGLASLRD GEKL+GERAFRVLFAG SLPLAVSTVVYFINHRYDG+QLWQLQSV
Sbjct: 86  IFAIGHSGLASLRDSGEKLIGERAFRVLFAGTSLPLAVSTVVYFINHRYDGLQLWQLQSV 145

Query: 63  PLLHQLVWLSSFVSFIFLYPSTFNLLEVAAVDKPKMHLWETG 122
           P +HQLVW SSFVSF FLYPSTFNLLEVAAVDKPKMHLWETG
Sbjct: 146 PGIHQLVWFSSFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 187

Query: 123  182
           
Sbjct: 206  187

Query: 183  242
           
Sbjct: 266  187

Query: 243  302
           
Sbjct: 326  187

Query: 303  309
           
Sbjct: 386  187

The following BLAST results are available for this feature:

BLAST of CU118361 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZCIS_ARATH	5.8e-46	84.31	15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO P...	[more]
ZCIS_MAIZE	9.3e-44	76.47	15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1	[more]

BLAST of CU118361 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXF1_CUCSA	1.6e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015720 PE=4 SV=1	[more]
B9IA93_POPTR	1.1e-46	89.22	Sodium symporter-related family protein OS=Populus trichocarpa GN=POPTR_0014s144...	[more]
A5BX06_VITVI	1.8e-46	91.18	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038450 PE=4 SV=1	[more]
A0A068V1H6_COFCA	4.1e-46	89.22	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042011001 PE=4 SV=1	[more]
W9RMG1_9ROSA	4.1e-46	90.20	15-cis-zeta-carotene isomerase OS=Morus notabilis GN=L484_012007 PE=4 SV=1	[more]

BLAST of CU118361 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468784\|ref\|XP_004152101.1\|	1.7e-50	100.00	PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis sativus]	[more]
gi\|659108018\|ref\|XP_008453974.1\|	4.3e-49	98.04	PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Cucumis melo]	[more]
gi\|566204260\|ref\|XP_002321091.2\|	1.2e-46	89.22	sodium symporter-related family protein [Populus trichocarpa]	[more]
gi\|147865106\|emb\|CAN79408.1\|	2.0e-46	91.18	hypothetical protein VITISV_038450 [Vitis vinifera]	[more]
gi\|296089624\|emb\|CBI39443.3\|	4.5e-46	91.18	unnamed protein product [Vitis vinifera]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G015720	Csa4G015720	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LWSN9	FKNP3UI02LWSN9	EST
FKNP3UI02NQRUZ	FKNP3UI02NQRUZ	EST