CU118204 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118204
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 9274619 .. 9274967 (+)
Sequence length	258

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGACCGGGCAATGCCATAACCAACTAAAACCGCAGCTGGTGTTGAAAAAAGAGTTAACATGGTGGAATTAGCGGCAGTAAAAGAAGCAAGAGCAGCTGCATTCCCTGAAGCAGTGGTCAACCAGTCAACGGCTAGCTTGAAGAGAAATGGCACCTGAACGTTCAAAATCTTAGCTCCGACCAAGAAACCCAAAGCCATTATGACCCTGAAACGGAACTCGGAGTTGTCTTTCATCCATAAATAACTAGCAAGAGTACG

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU118204 vs. Swiss-Prot
Match: AB25B_ARATH (ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-24
Identity = 56/86 (65.12%), Postives = 61/86 (70.93%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLA YLWM+DN EFRFRVI ALGFLVGAK+LNVQVPFLFKLAVDW              
Sbjct: 125 RTLAGYLWMRDNPEFRFRVIAALGFLVGAKVLNVQVPFLFKLAVDWLASATGTGASLTTF 184

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 +LT+F+TPAAVL+GYGIAR+
Sbjct: 185 AATNPTLLTVFATPAAVLIGYGIART 210

Query: 121  180
           
Sbjct: 245  210

Query: 181  240
           
Sbjct: 305  210

Query: 241  259
           
Sbjct: 365  210

[Close]

BLAST of CU118204 vs. Swiss-Prot
Match: AB23B_ARATH (ABC transporter B family member 23, mitochondrial OS=Arabidopsis thaliana GN=ABCB23 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-17
Identity = 47/86 (54.65%), Postives = 55/86 (63.95%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RT++SYLWMKDN E RFRVI AL  L+GAK LNVQVPFLFKL++D               
Sbjct: 85  RTISSYLWMKDNPELRFRVIAALACLIGAKFLNVQVPFLFKLSID-----LLSSYSSSTI 144

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 +L  F+TP++VL+GYGIARS
Sbjct: 145 TDSNPYLLAAFATPSSVLIGYGIARS 165

Query: 121  180
           
Sbjct: 205  165

Query: 181  240
           
Sbjct: 265  165

Query: 241  259
           
Sbjct: 325  165

[Close]

BLAST of CU118204 vs. Swiss-Prot
Match: AB24B_ARATH (ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABCB24 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-16
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           R ++SYLWMKDN +  FRVI A   LVGAK LNVQVPFLFK+A+DW              
Sbjct: 90  RMISSYLWMKDNPKLCFRVISAFACLVGAKFLNVQVPFLFKVAIDW--------LSSSSF 149

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 ++  F+TP++VL+GYGIARS
Sbjct: 150 VDSNPYLVAAFATPSSVLIGYGIARS 167

Query: 121  180
           
Sbjct: 210  167

Query: 181  240
           
Sbjct: 270  167

Query: 241  259
           
Sbjct: 330  167

[Close]

BLAST of CU118204 vs. Swiss-Prot
Match: ABCB7_RAT (ATP-binding cassette sub-family B member 7, mitochondrial OS=Rattus norvegicus GN=Abcb7 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           + + SY+W KD  + R RV ++LGFL GAK +N+ VPF+FK AVD               
Sbjct: 122 KAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSDA 181

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 M T      AVL+GYG++R+
Sbjct: 182 PNTVATMAT------AVLIGYGVSRA 201

Query: 121  180
           
Sbjct: 242  201

Query: 181  240
           
Sbjct: 302  201

Query: 241  259
           
Sbjct: 362  201

[Close]

BLAST of CU118204 vs. Swiss-Prot
Match: ABCB7_HUMAN (ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           + + SY+W KD  + R RV ++LGFL GAK +N+ VPF+FK AVD               
Sbjct: 122 KAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSDA 181

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 M T      AVL+GYG++R+
Sbjct: 182 PNTVATMAT------AVLIGYGVSRA 201

Query: 121  180
           
Sbjct: 242  201

Query: 181  240
           
Sbjct: 302  201

Query: 241  259
           
Sbjct: 362  201

[Close]

BLAST of CU118204 vs. TrEMBL
Match: A0A0A0KG84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133800 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-26
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDW              
Sbjct: 157 RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWLTTASGNAAALASF 216

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 MLTLFSTPAAVLVGYGIARS
Sbjct: 217 TAANSTMLTLFSTPAAVLVGYGIARS 242

Query: 121  180
           
Sbjct: 277  242

Query: 181  240
           
Sbjct: 337  242

Query: 241  259
           
Sbjct: 397  242

[Close]

BLAST of CU118204 vs. TrEMBL
Match: D7MPM4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495937 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-22
Identity = 56/86 (65.12%), Postives = 63/86 (73.26%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLA YLWM+DN EFRFRVI ALGFLVGAK+LNVQVPFLFKLAVDW              
Sbjct: 125 RTLAGYLWMRDNPEFRFRVIAALGFLVGAKVLNVQVPFLFKLAVDWLASATGTGASLTTF 184

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 +LT+F+TPAAVL+GYGIAR+
Sbjct: 185 AATNPTLLTVFATPAAVLIGYGIART 210

Query: 121  180
           
Sbjct: 245  210

Query: 181  240
           
Sbjct: 305  210

Query: 241  259
           
Sbjct: 365  210

[Close]

BLAST of CU118204 vs. TrEMBL
Match: F6GU68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08350 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.7e-22
Identity = 58/86 (67.44%), Postives = 60/86 (69.77%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLA YLW KDN EFRFRVIMALGFLVGAK+LNVQVPFLFKLAVDW              
Sbjct: 124 RTLAKYLWSKDNPEFRFRVIMALGFLVGAKVLNVQVPFLFKLAVDWLTTTTGNATALASF 183

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                  L LF +PAAVLVGYGIARS
Sbjct: 184 TTANSTALALFVSPAAVLVGYGIARS 209

Query: 121  180
           
Sbjct: 244  209

Query: 181  240
           
Sbjct: 304  209

Query: 241  259
           
Sbjct: 364  209

[Close]

BLAST of CU118204 vs. TrEMBL
Match: B9I784_POPTR (STARIK 1 family protein OS=Populus trichocarpa GN=POPTR_0013s15640g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLASYLWM+DN EFR RV++ALGFLVGAK+LNVQVPFLFKLAVDW              
Sbjct: 158 RTLASYLWMEDNPEFRLRVVLALGFLVGAKVLNVQVPFLFKLAVDWLTTATSNAAALASF 217

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 +L LF+TPA+VL+GYGIAR+
Sbjct: 218 TTANSTLLALFATPASVLIGYGIART 243

Query: 121  180
           
Sbjct: 278  243

Query: 181  240
           
Sbjct: 338  243

Query: 241  259
           
Sbjct: 398  243

[Close]

BLAST of CU118204 vs. TrEMBL
Match: R0G8A3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10028596mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 55/86 (63.95%), Postives = 61/86 (70.93%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLA YLWM+DN EFRFRVI ALGFLVGAK+LNVQVPFLFKLAVDW              
Sbjct: 122 RTLAGYLWMRDNPEFRFRVIAALGFLVGAKVLNVQVPFLFKLAVDWLGSSTGTGASLTTF 181

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 ++T F TPAAVL+GYGIAR+
Sbjct: 182 AAANPSLVTAFGTPAAVLIGYGIART 207

Query: 121  180
           
Sbjct: 242  207

Query: 181  240
           
Sbjct: 302  207

Query: 241  259
           
Sbjct: 362  207

[Close]

BLAST of CU118204 vs. NCBI nr
Match: gi|449444328|ref|XP_004139927.1| (PREDICTED: ABC transporter B family member 25, mitochondrial [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDW              
Sbjct: 157 RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWLTTASGNAAALASF 216

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 MLTLFSTPAAVLVGYGIARS
Sbjct: 217 TAANSTMLTLFSTPAAVLVGYGIARS 242

Query: 121  180
           
Sbjct: 277  242

Query: 181  240
           
Sbjct: 337  242

Query: 241  259
           
Sbjct: 397  242

[Close]

BLAST of CU118204 vs. NCBI nr
Match: gi|700191567|gb|KGN46771.1| (hypothetical protein Csa_6G133800 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDW              
Sbjct: 157 RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWLTTASGNAAALASF 216

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 MLTLFSTPAAVLVGYGIARS
Sbjct: 217 TAANSTMLTLFSTPAAVLVGYGIARS 242

Query: 121  180
           
Sbjct: 277  242

Query: 181  240
           
Sbjct: 337  242

Query: 241  259
           
Sbjct: 397  242

[Close]

BLAST of CU118204 vs. NCBI nr
Match: gi|659112524|ref|XP_008456261.1| (PREDICTED: ABC transporter B family member 25, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDW              
Sbjct: 157 RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWLTTASGNAAALASF 216

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 MLTLFSTPAAVLVGYGIARS
Sbjct: 217 TAANSTMLTLFSTPAAVLVGYGIARS 242

Query: 121  180
           
Sbjct: 277  242

Query: 181  240
           
Sbjct: 337  242

Query: 241  259
           
Sbjct: 397  242

[Close]

BLAST of CU118204 vs. NCBI nr
Match: gi|659112522|ref|XP_008456260.1| (PREDICTED: ABC transporter B family member 25, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 66/86 (76.74%), Postives = 66/86 (76.74%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDW              
Sbjct: 157 RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWLTTASGNAAALASF 216

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 MLTLFSTPAAVLVGYGIARS
Sbjct: 217 TAANSTMLTLFSTPAAVLVGYGIARS 242

Query: 121  180
           
Sbjct: 277  242

Query: 181  240
           
Sbjct: 337  242

Query: 241  259
           
Sbjct: 397  242

[Close]

BLAST of CU118204 vs. NCBI nr
Match: gi|297793349|ref|XP_002864559.1| (hypothetical protein ARALYDRAFT_495937 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 56/86 (65.12%), Postives = 63/86 (73.26%), Query Frame = -1


Query: 1   RTLASYLWMKDNSEFRFRVIMALGFLVGAKILNVQVPFLFKLAVDWXXXXXXXXXXXXXX 60
           RTLA YLWM+DN EFRFRVI ALGFLVGAK+LNVQVPFLFKLAVDW              
Sbjct: 125 RTLAGYLWMRDNPEFRFRVIAALGFLVGAKVLNVQVPFLFKLAVDWLASATGTGASLTTF 184

Query: 61  XXXXXXMLTLFSTPAAVLVGYGIARS 120
                 +LT+F+TPAAVL+GYGIAR+
Sbjct: 185 AATNPTLLTVFATPAAVLIGYGIART 210

Query: 121  180
           
Sbjct: 245  210

Query: 181  240
           
Sbjct: 305  210

Query: 241  259
           
Sbjct: 365  210

The following BLAST results are available for this feature:

BLAST of CU118204 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB25B_ARATH	1.8e-24	65.12	ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABC...	[more]
AB23B_ARATH	1.3e-17	54.65	ABC transporter B family member 23, mitochondrial OS=Arabidopsis thaliana GN=ABC...	[more]
AB24B_ARATH	3.1e-16	51.16	ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABC...	[more]
ABCB7_RAT	1.1e-08	38.37	ATP-binding cassette sub-family B member 7, mitochondrial OS=Rattus norvegicus G...	[more]
ABCB7_HUMAN	1.1e-08	38.37	ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABC...	[more]

BLAST of CU118204 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG84_CUCSA	3.9e-26	76.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133800 PE=4 SV=1	[more]
D7MPM4_ARALL	2.0e-22	65.12	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
F6GU68_VITVI	7.7e-22	67.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08350 PE=4 SV=...	[more]
B9I784_POPTR	1.0e-21	62.79	STARIK 1 family protein OS=Populus trichocarpa GN=POPTR_0013s15640g PE=4 SV=1	[more]
R0G8A3_9BRAS	1.0e-21	63.95	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10028596mg PE=4 SV=1	[more]

BLAST of CU118204 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444328\|ref\|XP_004139927.1\|	9.6e-26	76.74	PREDICTED: ABC transporter B family member 25, mitochondrial [Cucumis sativus]	[more]
gi\|700191567\|gb\|KGN46771.1\|	9.6e-26	76.74	hypothetical protein Csa_6G133800 [Cucumis sativus]	[more]
gi\|659112524\|ref\|XP_008456261.1\|	9.6e-26	76.74	PREDICTED: ABC transporter B family member 25, mitochondrial isoform X2 [Cucumis...	[more]
gi\|659112522\|ref\|XP_008456260.1\|	9.6e-26	76.74	PREDICTED: ABC transporter B family member 25, mitochondrial isoform X1 [Cucumis...	[more]
gi\|297793349\|ref\|XP_002864559.1\|	4.9e-22	65.12	hypothetical protein ARALYDRAFT_495937 [Arabidopsis lyrata subsp. lyrata]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G133800	Csa6G133800	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LS4R3	FKNP3UI02LS4R3	EST
H0043497	H0043497	EST