CU118005 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU118005
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14285223 .. 14285398 (-)
Sequence length181
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CTTCCATCGACATGTACAAAGAACGAGCCGTTCAAATTTCCACTGTCAACACCATCAACTCCTCTCTCAAGGAGCTCTTTTCTCACTCCTTTAACGTAACATTCAAACCCTTCTCTCCCCCTTCCCTCAAAGATCTTACTGAAACGATAAATTTGCTTCTTCAATGTCTCGATTACTCCCC
Library
Library categoryESTs
gynoecious flower library2
Homology
[Close]
BLAST of CU118005 vs. TrEMBL
Match: A0A0A0L740_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213500 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.3e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 3 

Query: 3   SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 62
           SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY
Sbjct: 48  SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 105

Query: 63   122
           
Sbjct: 108  105

Query: 123  177
           
Sbjct: 168  105

[Close]
BLAST of CU118005 vs. NCBI nr
Match: gi|700202425|gb|KGN57558.1| (hypothetical protein Csa_3G213500 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 3 

Query: 3   SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 62
           SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY
Sbjct: 48  SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 105

Query: 63   122
           
Sbjct: 108  105

Query: 123  177
           
Sbjct: 168  105

[Close]
BLAST of CU118005 vs. NCBI nr
Match: gi|659077518|ref|XP_008439248.1| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 3 

Query: 3   SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 62
           SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY
Sbjct: 48  SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 105

Query: 63   122
           
Sbjct: 108  105

Query: 123  177
           
Sbjct: 168  105

[Close]
BLAST of CU118005 vs. NCBI nr
Match: gi|778680142|ref|XP_004149971.2| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 3 

Query: 3   SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 62
           SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY
Sbjct: 48  SIDMYKERAVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDY 105

Query: 63   122
           
Sbjct: 108  105

Query: 123  177
           
Sbjct: 168  105

The following BLAST results are available for this feature:
BLAST of CU118005 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L740_CUCSA4.3e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213500 PE=4 SV=1[more]
BLAST of CU118005 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202425|gb|KGN57558.1|1.4e-23100.00hypothetical protein Csa_3G213500 [Cucumis sativus][more]
gi|659077518|ref|XP_008439248.1|1.4e-23100.00PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo][more]
gi|778680142|ref|XP_004149971.2|1.4e-23100.00PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G213500Csa3G213500gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0040700G0040700EST
G0090294G0090294EST