CU117917 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU117917
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9878529 .. 9878865 (+)
Sequence length240
The following sequences are available for this feature:

transcribed_cluster sequence

GGGAAAGATCACCTCTTTACTAGATGCAATATAGACAAGTCAATACAAATAAACCAAGTCAGATTTCATGTATATCATTGAATGAGAAAAGTTAATATGCATTACATGGAAATAATGATCACCACAAAAACAGCCAGCAAAGAAATGAGAAATTTACCACAAGGTCTGACAATTCCACCCTTAGAAAACACCTTATCTTTGCAATCAAGAACATGGCATATGCATCTCAAACCCACTCCA
BLAST of CU117917 vs. TrEMBL
Match: B9HQU1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15040g PE=4 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-06
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = -2

Query: 99  GVGLRCICHVLDCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM*C 158
           GVGL+CICH  DC+DKV S  G  +P G  L+S+L+ FVV++    C
Sbjct: 229 GVGLKCICHPQDCRDKVISMAGSTKPVGNVLLSVLSFFVVLVFFFHC 275

Query: 159 218
           
Sbjct: 289 275

Query: 219 240
           
Sbjct: 349 275

BLAST of CU117917 vs. NCBI nr
Match: gi|449443410|ref|XP_004139470.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -2

Query: 105 GVGLRCICHVLDCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM 164
           GVGLRCICHVLDCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM
Sbjct: 225 GVGLRCICHVLDCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM 269

Query: 165 224
           
Sbjct: 285 269

Query: 225 240
           
Sbjct: 345 269

BLAST of CU117917 vs. NCBI nr
Match: gi|659071772|ref|XP_008461870.1| (PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = -2

Query: 105 GVGLRCICHVLDCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM 164
           GVGLRCICHVL+CKDKVFSKGGIVRP GK LISL+AVFVVIIISM
Sbjct: 225 GVGLRCICHVLECKDKVFSKGGIVRPGGKILISLMAVFVVIIISM 269

Query: 165 224
           
Sbjct: 285 269

Query: 225 240
           
Sbjct: 345 269

BLAST of CU117917 vs. NCBI nr
Match: gi|449443412|ref|XP_004139471.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -2

Query: 159 GVGLRCICHVLDCKDKVFSKGGIVRPC 218
           GVGLRCICHVLDCKDKVFSKGGIVRPC
Sbjct: 225 GVGLRCICHVLDCKDKVFSKGGIVRPC 251

Query: 219 240
           
Sbjct: 285 251

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B9HQU1_POPTR9.2e-0651.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15040g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
gi|449443410|ref|XP_004139470.1|1.7e-16100.00PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus][more]
gi|659071772|ref|XP_008461870.1|1.0e-1391.11PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo][more]
gi|449443412|ref|XP_004139471.1|6.4e-08100.00PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G150990Csa1G150990gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MZPZZFKNP3UI02MZPZZEST
G0015778G0015778EST