Csa1G150990 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G150990
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9875935 .. 9878838 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGATTGCAGTATGTTTCTGATTCTTCGATCTTACCAAGTTAATATTTAGTTTTTTATATTTAATTCCAGATTCATGATATTTACTGCTTGTTCTATGATTTTGCAGAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTTGTGGTAAATTTCTCATTTCTTTGCTGGCTGTTTTTGTGGTGATCATTATTTCCATGTAATGCATATTAACTTTTCTCATTCAATGATATACATGAAATCTGACTTGGTTTATTTGTATTGACTTGTCTATATTGCATCTAGTAAAGAGGTGATCTTTCACCAATATTTTTGGTATGTTAAAAATAAATTACATCAAACAGTAAGGTTCTCCCACTTAGGATATGAAGTCAGGATCTATCCATTCTGAATCATATCAAATATGACTTAGTAGTGATCTCTATGCATTTGTGAGAATCTCTTTTCATTATGGTTTCTCCAACTAAATTACAGTGTTTCTCTAACTTACACACAATATTATTGAAACTTACAGGGTGCATGTCCAAGGAATTTCCCATTCCCAATTCAATTGGATTAAGTATAACAAATTTTAGAAGTTACAAAAATTAATTGATCTATCCATTCTAAGTTTGAATCATATATCTAGAATGAAACTCTAAGGCCCAGCTGGGCAATCGTTTTGTTTTTTTAAATTAACCATGTTTTCCTTCTATCTCTTATCATGATGGCACTTTTTAAAATATATTGATACACTTCTTAATCAAATTTAAAAAACAAAAACAACCTTGCAAACGTTTTAGTTTTTTTCTCTAAACCACGGATAGAACGTAGAAAACAAAAAGAAAAATTCAGATGTGAAAATAGTGTTTATAGGCTTGATTTTAAAAAACGAAAACTGAACTATCAAATAGGTTTAAACTTTTAATTGTGTGTGAAAGATGTGAAGATTTAAAATTCTAAAAAACGTATAGCTTTTTCATAGATCACATCCACCCAAACAAATCAACCCTAAATTTATAGTATGAACCTAGCTTTTTTTATAAATAAATTCAATTTCGTTGGATCAGATCATATTAGACGTCATTAACGGTTATAATAAGAAAAATTGTATCAAATGATAAAAACATTTAAATAAAGCAGTCCATGCCATTTTTTTTTCAAATATAAAAAATATATTTTACAATTTAAAATAATTCTATTATTATAGCATGCAATGCTCAATGACAAATAGATTGTAGACCTCAAGTTTTCCAGTCAGCAAAGAATTATCACAATCTAGTCTCTTATAAATTGATTGAGTTATGGTCTAAAAATAAATGAGAATATACTAACAAATAAGAAATATCCTAAATCATTTAAATGAAAATGAAAATAATAGGTTTTTTTTATTCAAAGAATTATTTTAATAAATGAATGTATATATCCAATCTTAACCATGATTTCATCTCAATTAGGATTAGAAACTCAACATGTGTTTTTTATTCAAAAAAAATATTTTAATAAACTAACGTATATATCGATCTTAACCATGATTTCATCTTAATTTTCATCCCAATTCGAAATTCATACACAAAACAATACTACCATGAGAGAATAAAATTAAAGATAAATATATAATTGAATAAGAAAAAAAATATTTCTAGAATTCTCTAGCAATGGTTGAAATTATCATTATATTATCAATTACTTAAATGATAATTGCTTAATTGAGGTAATGTCTTCGAAGTATTATTTTTGAGCTGCAAATATTTACAAAAATCTCGATGGATATGATAAAGATGTGCAAAAGATTAAAAAAAAAAAAAAAATTATTCTTGTTTAAATCTTAATCTCACACCGTGAAAGATTTATAATATTTCATAAAAATAATCCAATCTTGTAATTTACTAATTTACTGTCCATTGGAAGACTTTGCTTTGTAAATTTTGACGATCAAAATTTTGCCAACTATATAATAAAAGATAATGTACATTGTATGGCATCAAATCATACCAACTAACATTCTATTAACTATTTTATTCTAAAAAACATTTAAAAATATAAATATTTTTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAAAAATAAAATAATAAAATTACTTTAGTTTCTACTGTCAAAACCTAATAACATAAAATATTTCCAAAAAAAAAAAAAAGCATAAAAGAAGACAAACAAATACTTCGTGTTGAAAATAGTTATTATTGAATGAATAAGCAACTAATTTCTTTTGCATTCAAGTAAACGATACGTGCATATTGACTTTGTATTTACAACATTTTGATTGTTTATTTTCAAACTAAGATAGTCGAGACAAAACTAATTGTGATAGGTTTTCAACGTTTTTGGATGTCTTGATAATAATGTGTCTTAGTGTAATGGAAGTTCTTGCTCTTAAGATCAGTCAGGTAGTTCAATATCACTTAACATTTGTTACTGTGACTTTTAAATCTGTCGTTCACCTTCATTCCTTAAACTGCACATTACATTTCTAATCAGATATTTTCCCACCTCATTGTTTTTCTTATACTGCTAATGTAGTTAGTTATTCTCCCTCTTCTCTTCTTCTGTTGAATTAAAATATAATGGAATATTAGCAGCTAAATGGGCCTTATTGGTCGTTGGTATTTATTTGTTTGTATCTATATGGATCTTAATTTTTGTGGTTATGACAACTAACAAGCACTTTGCATGTTTCTTTAACTTCACAACAATTTATAATCGGCTTGATTGCAGAAAGTTGAGCGTTTGCGGGCAAAAGTTAAACAATCCCCTTCAAAATCAATGCTAATTGCGTTCACTCCATCATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAA

mRNA sequence

ATGTTCTTGATTGCAAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTTGTGAAAGTTGAGCGTTTGCGGGCAAAAGTTAAACAATCCCCTTCAAAATCAATGCTAATTGCGTTCACTCCATCATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAA

Coding sequence (CDS)

ATGTTCTTGATTGCAAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTTGTGAAAGTTGAGCGTTTGCGGGCAAAAGTTAAACAATCCCCTTCAAAATCAATGCTAATTGCGTTCACTCCATCATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAA

Protein sequence

MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMSKLQLQHALVK*
Homology
[Close]
BLAST of Csa1G150990 vs. TrEMBL
Match: A0A0A0LSL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G150990 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.1e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMS 60
          MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMS
Sbjct: 1  MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMS 60

Query: 61 KLQLQHALVK 71
          KLQLQHALVK
Sbjct: 61 KLQLQHALVK 70

[Close]
BLAST of Csa1G150990 vs. NCBI nr
Match: gi|700209804|gb|KGN64900.1| (hypothetical protein Csa_1G150990 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMS 60
          MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMS
Sbjct: 1  MFLIAKIRCFLRVELSDLVKVERLRAKVKQSPSKSMLIAFTPSWNALVSGRLLGIQILMS 60

Query: 61 KLQLQHALVK 71
          KLQLQHALVK
Sbjct: 61 KLQLQHALVK 70

The following BLAST results are available for this feature:
BLAST of Csa1G150990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSL0_CUCSA4.1e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G150990 PE=4 SV=1[more]
BLAST of Csa1G150990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209804|gb|KGN64900.1|5.9e-29100.00hypothetical protein Csa_1G150990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU117917cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G150990.1Csa1G150990.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU117917CU117917transcribed_cluster