CU116498 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU116498
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8744827 .. 8750460 (-)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGAGGTGAATTCCTTATGTGCTACTGTTTGCAGCGCCATCAGCATATAAGGATCAAATTGAAGAGGAGAGAGTGAAGAGATGGTTCCCAGATTTCTAATTCAGCGGCTAACACCATATTTGGGAGCACATATCCGAAAGAACCAAAGGCTTCTTAGCTCTTCTGTTTCAGCCTATCAAGAAGCCTCTTCTTCGTTGATAACTCCATCTGCGGGCATTGATACAATT
Library
Library categoryESTs
fruit (8DPP) library2
Homology
[Close]
BLAST of CU116498 vs. TrEMBL
Match: A0A0A0LSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108280 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 36/49 (73.47%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 88  MVPRFLIQRLTPYLGAHIRKNQRLLXXXXXXXXXXXXXLITPSAGIDTI 147
           MVPRFLIQRLTPYLGAHIRKNQRLL             LITPSAGIDTI
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTI 49

Query: 148  207
           
Sbjct: 61   49

Query: 208  235
           
Sbjct: 121  49

[Close]
BLAST of CU116498 vs. NCBI nr
Match: gi|778659089|ref|XP_011653808.1| (PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 36/49 (73.47%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 88  MVPRFLIQRLTPYLGAHIRKNQRLLXXXXXXXXXXXXXLITPSAGIDTI 147
           MVPRFLIQRLTPYLGAHIRKNQRLL             LITPSAGIDTI
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTI 49

Query: 148  207
           
Sbjct: 61   49

Query: 208  235
           
Sbjct: 121  49

[Close]
BLAST of CU116498 vs. NCBI nr
Match: gi|700209707|gb|KGN64803.1| (hypothetical protein Csa_1G108280 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 36/49 (73.47%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 88  MVPRFLIQRLTPYLGAHIRKNQRLLXXXXXXXXXXXXXLITPSAGIDTI 147
           MVPRFLIQRLTPYLGAHIRKNQRLL             LITPSAGIDTI
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTI 49

Query: 148  207
           
Sbjct: 61   49

Query: 208  235
           
Sbjct: 121  49

[Close]
BLAST of CU116498 vs. NCBI nr
Match: gi|449459108|ref|XP_004147288.1| (PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 36/49 (73.47%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 88  MVPRFLIQRLTPYLGAHIRKNQRLLXXXXXXXXXXXXXLITPSAGIDTI 147
           MVPRFLIQRLTPYLGAHIRKNQRLL             LITPSAGIDTI
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTI 49

Query: 148  207
           
Sbjct: 61   49

Query: 208  235
           
Sbjct: 121  49

The following BLAST results are available for this feature:
BLAST of CU116498 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSN2_CUCSA2.3e-0973.47Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108280 PE=4 SV=1[more]
BLAST of CU116498 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659089|ref|XP_011653808.1|1.5e-0973.47PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X2 [C... [more]
gi|700209707|gb|KGN64803.1|1.5e-0973.47hypothetical protein Csa_1G108280 [Cucumis sativus][more]
gi|449459108|ref|XP_004147288.1|1.5e-0973.47PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X1 [C... [more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G108280Csa1G108280gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LEUB4FKNP3UI02LEUB4EST
FKNP3UI02NH0BIFKNP3UI02NH0BIEST