CU115966 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU115966
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 6872923 .. 6873232 (-)
Sequence length	310

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGACATACTTAGTTTAGCTTCATCGTGGATGCAATTCAGATATAGATGTTTCATTGACAGACCACTTAGTAGTAGACTTATTAGAAGAATGATCACTGCCTATAGTAGTGCCATTATTGTCTTTACTCCGCATGAACAATGCTGGCTCTTTAGGTATTGGCAACGTAACCGAATAACTATTAAGCATAAGAACAATGGATGCCATGGAAGGTCTGCTGTTAGGATCCTCTTGAACACACAATAAAGCAATATGAATGCATCTAAGCACCTCATTTCTCGAGTAACTATCTTTCAACGTTGGGTCCAATAA

Library


Library category	ESTs
fruit (8DPP) library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU115966 vs. Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-20
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + ++  RNEV+RC+HI LLCVQEDP  RP++++IVLML S +VTLP+P++P LF 
Sbjct: 577 LVDPAIVENCQRNEVVRCVHIGLLCVQEDPAERPTLSTIVLMLTSNTVTLPVPRQPGLFF 636

Query: 83  RSKDNNGTTIGSDHSSNKSTTK---WSVNETSISELHPR 142
           +S+      IG D     +T+K    SV++ SI+++HPR
Sbjct: 637 QSR------IGKDPLDTDTTSKSLLGSVDDASITDIHPR 669

Query: 143  202
           
Sbjct: 697  669

Query: 203  262
           
Sbjct: 757  669

Query: 263  311
           
Sbjct: 817  669

[Close]

BLAST of CU115966 vs. Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+D  ++ ++  NEV+RCIHIALLCVQED + RPSM  I++M+NS++VTLPIPK     +
Sbjct: 576 LVDEAMRGNFQTNEVIRCIHIALLCVQEDSSERPSMDDILVMMNSFTVTLPIPKRSGFLL 635

Query: 83  R----SKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR 142
           R    S+D       SDHS+   +   SV+++SI+ ++PR
Sbjct: 636 RTMKDSRDPRSGGSASDHSATSKSLPLSVDDSSITIVYPR 675

Query: 143  202
           
Sbjct: 696  675

Query: 203  262
           
Sbjct: 756  675

Query: 263  311
           
Sbjct: 816  675

[Close]

BLAST of CU115966 vs. Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-18
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP +K+SY  +EV+RCIHI +LCVQE P  RP M++I  ML + S+TLP+P+ P  F 
Sbjct: 569 LIDPAIKESYDNDEVIRCIHIGILCVQETPADRPEMSTIFQMLTNSSITLPVPRPPGFFF 628

Query: 83  RSKDN-NGTTIGSDHSSNKS-TTKWSVNETSISELHPR 142
           R++ N +  T GS+   + S +  +S++  SI+   PR
Sbjct: 629 RNRPNLDPLTYGSEQGQSSSMSVPFSIDSASITRATPR 666

Query: 143  202
           
Sbjct: 689  666

Query: 203  262
           
Sbjct: 749  666

Query: 263  311
           
Sbjct: 809  666

[Close]

BLAST of CU115966 vs. Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + DS  ++EV+RC HI LLCVQEDP  RP+M++I +ML S ++ LP P++P  F+
Sbjct: 565 LVDPFIADSCRKSEVVRCTHIGLLCVQEDPVKRPAMSTISVMLTSNTMALPAPQQPGFFV 624

Query: 83  RSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR 142
           RS+           ++NKS T  S+++ S+S+L PR
Sbjct: 625 RSRPGTNRLDSDQSTTNKSVTV-SIDDKSMSDLDPR 659

Query: 143  202
           
Sbjct: 685  659

Query: 203  262
           
Sbjct: 745  659

Query: 263  311
           
Sbjct: 805  659

[Close]

BLAST of CU115966 vs. Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=3 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-17
Identity = 41/96 (42.71%), Postives = 65/96 (67.71%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + ++   +EV+RCIHI LLCVQEDP  RP+++++ +ML S +VTLP+P++P  F+
Sbjct: 582 LVDPLIANNCQNSEVVRCIHIGLLCVQEDPAKRPTISTVFMMLTSNTVTLPVPRQPGFFI 641

Query: 83  RSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR 142
           +S      T  SD S+   +T  S+++  I++L+PR
Sbjct: 642 QSSPVKDPT-DSDQSTTTKSTPASIDDELITDLYPR 676

Query: 143  202
           
Sbjct: 702  676

Query: 203  262
           
Sbjct: 762  676

Query: 263  311
           
Sbjct: 822  676

[Close]

BLAST of CU115966 vs. TrEMBL
Match: A5BD87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034184 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-28
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + DSY+RNEV+RCIH+ LLCVQEDP+ RPSMAS+VLML+SYSVTLP+P++PA F+
Sbjct: 558 LMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFI 617

Query: 83  RSKDNNGTTIG---SDHSSNKSTTKWSVNETSISELHPR 142
           RS   +G  I    SD S++KS T WS+NETSISEL+PR
Sbjct: 618 RSGTQSGFPINALESDQSASKS-TPWSLNETSISELYPR 655

Query: 143  202
           
Sbjct: 678  655

Query: 203  262
           
Sbjct: 738  655

Query: 263  311
           
Sbjct: 798  655

[Close]

BLAST of CU115966 vs. TrEMBL
Match: F6HTL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01550 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-28
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + DSY+RNEV+RCIH+ LLCVQEDP+ RPSMAS+VLML+SYSVTLP+P++PA F+
Sbjct: 385 LMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFI 444

Query: 83  RSKDNNGTTIG---SDHSSNKSTTKWSVNETSISELHPR 142
           RS   +G  I    SD S++KS T WS+NETSISEL+PR
Sbjct: 445 RSGTQSGFPINALESDQSASKS-TPWSLNETSISELYPR 482

Query: 143  202
           
Sbjct: 505  482

Query: 203  262
           
Sbjct: 565  482

Query: 263  311
           
Sbjct: 625  482

[Close]

BLAST of CU115966 vs. TrEMBL
Match: F6HWQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0366g00020 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.6e-28
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP ++DSY+RNEV+RCIH+ LLCVQEDP+ RPSMAS+VLML+SYSVTLP+P++PA F+
Sbjct: 572 LMDPIMRDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFI 631

Query: 83  RSKDNNGTTI--GSDHSSNKSTTKWSVNETSISELHPR 142
            S   +G  I   SD S++KS T WSVNETSISEL+PR
Sbjct: 632 GSGTQSGFPIKAESDQSTSKS-TPWSVNETSISELYPR 668

Query: 143  202
           
Sbjct: 692  668

Query: 203  262
           
Sbjct: 752  668

Query: 263  311
           
Sbjct: 812  668

[Close]

BLAST of CU115966 vs. TrEMBL
Match: A0A0A0LX60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064830 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -1


Query: 23  MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 82
           MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP
Sbjct: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60

Query: 83  R 142
           R
Sbjct: 61  R 61

Query: 143  202
           
Sbjct: 121  61

Query: 203  206
           
Sbjct: 181  61

[Close]

BLAST of CU115966 vs. TrEMBL
Match: V4UDW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014504mg PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-25
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           LLD  L DSYSRNEV+RCI + LLCVQEDP  RPSMA+IVLMLNSYSVTLP+P++PA F+
Sbjct: 573 LLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPLPQQPAFFI 632

Query: 83  RSKDNNGTTIGSDHSSNKSTTK---WSVNETSISELHPR 142
            S+   G        S+KST+K   WSV+E SI+E++PR
Sbjct: 633 GSRTERGLPTKEFECSDKSTSKSIPWSVDEASITEVYPR 671

Query: 143  202
           
Sbjct: 693  671

Query: 203  262
           
Sbjct: 753  671

Query: 263  311
           
Sbjct: 813  671

[Close]

BLAST of CU115966 vs. NCBI nr
Match: gi|449472233|ref|XP_004153532.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM
Sbjct: 571 LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 630

Query: 83  RSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR 142
           RSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR
Sbjct: 631 RSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR 666

Query: 143  202
           
Sbjct: 691  666

Query: 203  262
           
Sbjct: 751  666

Query: 263  311
           
Sbjct: 811  666

[Close]

BLAST of CU115966 vs. NCBI nr
Match: gi|659068815|ref|XP_008446411.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 9.1e-39
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = -1


Query: 23   LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
            LLDP LKD+YSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALF+
Sbjct: 1157 LLDPMLKDNYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFV 1216

Query: 83   RSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR 142
            RSKD NG TIGSDHSSNKS TK SVNETS+SELHPR
Sbjct: 1217 RSKD-NGNTIGSDHSSNKS-TKCSVNETSLSELHPR 1250

Query: 143   202
            
Sbjct: 1277  1250

Query: 203   262
            
Sbjct: 1337  1250

Query: 263   311
            
Sbjct: 1397  1250

[Close]

BLAST of CU115966 vs. NCBI nr
Match: gi|147821544|emb|CAN72253.1| (hypothetical protein VITISV_034184 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + DSY+RNEV+RCIH+ LLCVQEDP+ RPSMAS+VLML+SYSVTLP+P++PA F+
Sbjct: 558 LMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFI 617

Query: 83  RSKDNNGTTIG---SDHSSNKSTTKWSVNETSISELHPR 142
           RS   +G  I    SD S++KS T WS+NETSISEL+PR
Sbjct: 618 RSGTQSGFPINALESDQSASKS-TPWSLNETSISELYPR 655

Query: 143  202
           
Sbjct: 678  655

Query: 203  262
           
Sbjct: 738  655

Query: 263  311
           
Sbjct: 798  655

[Close]

BLAST of CU115966 vs. NCBI nr
Match: gi|296087502|emb|CBI34091.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + DSY+RNEV+RCIH+ LLCVQEDP+ RPSMAS+VLML+SYSVTLP+P++PA F+
Sbjct: 535 LMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFI 594

Query: 83  RSKDNNGTTIG---SDHSSNKSTTKWSVNETSISELHPR 142
           RS   +G  I    SD S++KS T WS+NETSISEL+PR
Sbjct: 595 RSGTQSGFPINALESDQSASKS-TPWSLNETSISELYPR 632

Query: 143  202
           
Sbjct: 655  632

Query: 203  262
           
Sbjct: 715  632

Query: 263  311
           
Sbjct: 775  632

[Close]

BLAST of CU115966 vs. NCBI nr
Match: gi|731384580|ref|XP_010648189.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X1 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = -1


Query: 23  LLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFM 82
           L+DP + DSY+RNEV+RCIH+ LLCVQEDP+ RPSMAS+VLML+SYSVTLP+P++PA F+
Sbjct: 585 LMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFI 644

Query: 83  RSKDNNGTTIG---SDHSSNKSTTKWSVNETSISELHPR 142
           RS   +G  I    SD S++KS T WS+NETSISEL+PR
Sbjct: 645 RSGTQSGFPINALESDQSASKS-TPWSLNETSISELYPR 682

Query: 143  202
           
Sbjct: 705  682

Query: 203  262
           
Sbjct: 765  682

Query: 263  311
           
Sbjct: 825  682

The following BLAST results are available for this feature:

BLAST of CU115966 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRK10_ARATH	4.2e-20	48.48	Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 P...	[more]
CRK25_ARATH	6.1e-19	46.00	Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 P...	[more]
CRK31_ARATH	8.8e-18	43.88	Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana G...	[more]
CRK7_ARATH	2.6e-17	44.79	Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=...	[more]
CRK8_ARATH	2.6e-17	42.71	Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=...	[more]

BLAST of CU115966 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BD87_VITVI	6.6e-28	65.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034184 PE=3 SV=1	[more]
F6HTL8_VITVI	6.6e-28	65.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01550 PE=3 SV=...	[more]
F6HWQ6_VITVI	8.6e-28	66.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0366g00020 PE=3 SV=...	[more]
A0A0A0LX60_CUCSA	6.1e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064830 PE=4 SV=1	[more]
V4UDW1_9ROSI	5.2e-25	61.62	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014504mg PE=3 SV=1	[more]

BLAST of CU115966 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449472233\|ref\|XP_004153532.1\|	1.5e-46	100.00	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis sativus]	[more]
gi\|659068815\|ref\|XP_008446411.1\|	9.1e-39	91.67	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis melo]	[more]
gi\|147821544\|emb\|CAN72253.1\|	3.6e-27	65.66	hypothetical protein VITISV_034184 [Vitis vinifera]	[more]
gi\|296087502\|emb\|CBI34091.3\|	3.6e-27	65.66	unnamed protein product [Vitis vinifera]	[more]
gi\|731384580\|ref\|XP_010648189.1\|	3.6e-27	65.66	PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X1 [Vitis vinif...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011009	Kinase-like_dom_sf

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G064830	Csa1G064830	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LOO82	FKNP3UI02LOO82	EST
FKNP3UI02MY8P9	FKNP3UI02MY8P9	EST
H0182616	H0182616	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 2..76 score: 4.1
None	No IPR available	PANTHER	PTHR27002	FAMILY NOT NAMED	coord: 1..96 score: 3.4
None	No IPR available	PANTHER	PTHR27002:SF122	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 28-RELATED	coord: 1..96 score: 3.4