Csa1G064830 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G064830
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cysteine-rich receptor-like protein kinase
Location	Chr1 : 6873028 .. 6873231 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCATTGTTCTTATGCTTAATAGTTATTCGGTTACATTGCCAATACCTAAAGAGCCAGCATTGTTCATGCGGAGTAAAGACAATAATGGCACTACTATAGGCAGTGATCATTCTTCTAATAAGTCTACTACTAAGTGGTCTGTCAATGAAACATCTATATCTGAATTGCATCCACGATGAAGCTAACTAAGTATGTCT

mRNA sequence

ATGGCATCCATTGTTCTTATGCTTAATAGTTATTCGGTTACATTGCCAATACCTAAAGAGCCAGCATTGTTCATGCGGAGTAAAGACAATAATGGCACTACTATAGGCAGTGATCATTCTTCTAATAAGTCTACTACTAAGTGGTCTGTCAATGAAACATCTATATCTGAATTGCATCCACGATGA

Coding sequence (CDS)

ATGGCATCCATTGTTCTTATGCTTAATAGTTATTCGGTTACATTGCCAATACCTAAAGAGCCAGCATTGTTCATGCGGAGTAAAGACAATAATGGCACTACTATAGGCAGTGATCATTCTTCTAATAAGTCTACTACTAAGTGGTCTGTCAATGAAACATCTATATCTGAATTGCATCCACGATGA

Protein sequence

MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR*

Homology

[Close]

BLAST of Csa1G064830 vs. Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3)

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-06
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTK---WSVNETSISE 60
           +++IVLML S +VTLP+P++P LF +S+      IG D     +T+K    SV++ SI++
Sbjct: 612 LSTIVLMLTSNTVTLPVPRQPGLFFQSR------IGKDPLDTDTTSKSLLGSVDDASITD 669

Query: 61  LHPR 62
           +HPR
Sbjct: 672 IHPR 669

[Close]

BLAST of Csa1G064830 vs. TrEMBL
Match: A0A0A0LX60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064830 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60
          MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP
Sbjct: 1  MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of Csa1G064830 vs. TrEMBL
Match: F6HTL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01550 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-11
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIG---SDHSSNKSTTKWSVNETSISE 60
           MAS+VLML+SYSVTLP+P++PA F+RS   +G  I    SD S++KS T WS+NETSISE
Sbjct: 420 MASVVLMLSSYSVTLPLPQQPAFFIRSGTQSGFPINALESDQSASKS-TPWSLNETSISE 479

Query: 61  LHPR 62
           L+PR
Sbjct: 480 LYPR 482

[Close]

BLAST of Csa1G064830 vs. TrEMBL
Match: A5BD87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034184 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-11
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIG---SDHSSNKSTTKWSVNETSISE 60
           MAS+VLML+SYSVTLP+P++PA F+RS   +G  I    SD S++KS T WS+NETSISE
Sbjct: 593 MASVVLMLSSYSVTLPLPQQPAFFIRSGTQSGFPINALESDQSASKS-TPWSLNETSISE 652

Query: 61  LHPR 62
           L+PR
Sbjct: 653 LYPR 655

[Close]

BLAST of Csa1G064830 vs. TrEMBL
Match: F6HWQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0366g00020 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-10
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTI--GSDHSSNKSTTKWSVNETSISEL 60
           MAS+VLML+SYSVTLP+P++PA F+ S   +G  I   SD S++KS T WSVNETSISEL
Sbjct: 607 MASVVLMLSSYSVTLPLPQQPAFFIGSGTQSGFPIKAESDQSTSKS-TPWSVNETSISEL 666

Query: 61  HPR 62
           +PR
Sbjct: 667 YPR 668

[Close]

BLAST of Csa1G064830 vs. TrEMBL
Match: V4UDW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014504mg PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTK---WSVNETSISE 60
           MA+IVLMLNSYSVTLP+P++PA F+ S+   G        S+KST+K   WSV+E SI+E
Sbjct: 608 MATIVLMLNSYSVTLPLPQQPAFFIGSRTERGLPTKEFECSDKSTSKSIPWSVDEASITE 667

Query: 61  LHPR 62
           ++PR
Sbjct: 668 VYPR 671

[Close]

BLAST of Csa1G064830 vs. TAIR10
Match: AT4G23180.1 (AT4G23180.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 10)

HSP 1 Score: 50.8 bits (120), Expect = 3.4e-07
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTK---WSVNETSISE 60
           +++IVLML S +VTLP+P++P LF +S+      IG D     +T+K    SV++ SI++
Sbjct: 612 LSTIVLMLTSNTVTLPVPRQPGLFFQSR------IGKDPLDTDTTSKSLLGSVDDASITD 669

Query: 61  LHPR 62
           +HPR
Sbjct: 672 IHPR 669

[Close]

BLAST of Csa1G064830 vs. TAIR10
Match: AT4G05200.1 (AT4G05200.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 25)

HSP 1 Score: 48.5 bits (114), Expect = 1.7e-06
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMR----SKDNNGTTIGSDHSSNKSTTKWSVNETSIS 60
           M  I++M+NS++VTLPIPK     +R    S+D       SDHS+   +   SV+++SI+
Sbjct: 611 MDDILVMMNSFTVTLPIPKRSGFLLRTMKDSRDPRSGGSASDHSATSKSLPLSVDDSSIT 670

Query: 61  ELHPR 62
            ++PR
Sbjct: 671 IVYPR 675

[Close]

BLAST of Csa1G064830 vs. NCBI nr
Match: gi|700209465|gb|KGN64561.1| (hypothetical protein Csa_1G064830 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 5.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60
          MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP
Sbjct: 1  MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of Csa1G064830 vs. NCBI nr
Match: gi|449472233|ref|XP_004153532.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 5.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60
           MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP
Sbjct: 606 MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 665

Query: 61  R 62
           R
Sbjct: 666 R 666

[Close]

BLAST of Csa1G064830 vs. NCBI nr
Match: gi|659068815|ref|XP_008446411.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-19
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 1    MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHP 60
            MASIVLMLNSYSVTLPIPKEPALF+RSKD NG TIGSDHSSNKS TK SVNETS+SELHP
Sbjct: 1192 MASIVLMLNSYSVTLPIPKEPALFVRSKD-NGNTIGSDHSSNKS-TKCSVNETSLSELHP 1250

Query: 61   R 62
            R
Sbjct: 1252 R 1250

[Close]

BLAST of Csa1G064830 vs. NCBI nr
Match: gi|659068815|ref|XP_008446411.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-05
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELH 60
           MASIVLMLN+YSV LP+P+EP +FM + D N   I SD  +       S NE SI+ELH
Sbjct: 484 MASIVLMLNTYSVPLPLPEEPTIFMHNTD-NAIVINSDQLATNLFIS-STNEISITELH 540

HSP 2 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIG---SDHSSNKSTTKWSVNETSISE 60
           MAS+VLML+SYSVTLP+P++PA F+RS   +G  I    SD S++KS T WS+NETSISE
Sbjct: 593 MASVVLMLSSYSVTLPLPQQPAFFIRSGTQSGFPINALESDQSASKS-TPWSLNETSISE 652

Query: 61  LHPR 62
           L+PR
Sbjct: 653 LYPR 655

[Close]

BLAST of Csa1G064830 vs. NCBI nr
Match: gi|731384580|ref|XP_010648189.1| (PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X1 [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 1   MASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIG---SDHSSNKSTTKWSVNETSISE 60
           MAS+VLML+SYSVTLP+P++PA F+RS   +G  I    SD S++KS T WS+NETSISE
Sbjct: 620 MASVVLMLSSYSVTLPLPQQPAFFIRSGTQSGFPINALESDQSASKS-TPWSLNETSISE 679

Query: 61  LHPR 62
           L+PR
Sbjct: 680 LYPR 682

The following BLAST results are available for this feature:

BLAST of Csa1G064830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRK10_ARATH	6.1e-06	42.19	Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 P...	[more]

BLAST of Csa1G064830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX60_CUCSA	3.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064830 PE=4 SV=1	[more]
F6HTL8_VITVI	3.4e-11	62.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01550 PE=3 SV=...	[more]
A5BD87_VITVI	3.4e-11	62.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034184 PE=3 SV=1	[more]
F6HWQ6_VITVI	1.3e-10	63.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0366g00020 PE=3 SV=...	[more]
V4UDW1_9ROSI	2.4e-09	54.69	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014504mg PE=3 SV=1	[more]

BLAST of Csa1G064830 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23180.1	3.4e-07	42.19	cysteine-rich RLK (RECEPTOR-like protein kinase) 10	[more]
AT4G05200.1	1.7e-06	38.46	cysteine-rich RLK (RECEPTOR-like protein kinase) 25	[more]

BLAST of Csa1G064830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209465\|gb\|KGN64561.1\|	5.3e-26	100.00	hypothetical protein Csa_1G064830 [Cucumis sativus]	[more]
gi\|449472233\|ref\|XP_004153532.1\|	5.3e-26	100.00	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis sativus]	[more]
gi\|659068815\|ref\|XP_008446411.1\|	3.7e-19	90.16	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis melo]	[more]
gi\|659068815\|ref\|XP_008446411.1\|	1.4e-05	54.24	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis melo]	[more]
gi\|731384580\|ref\|XP_010648189.1\|	4.8e-11	62.50	PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X1 [Vitis vinif...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU115966	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G064830.1	Csa1G064830.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU115966	CU115966	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27002	FAMILY NOT NAMED	coord: 1..61 score: 8.4
None	No IPR available	PANTHER	PTHR27002:SF122	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 28-RELATED	coord: 1..61 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G064830	MELO3C002490	Melon (DHL92) v3.5.1	cumeB027
Csa1G064830	Lsi02G006440	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G064830	MELO3C002489.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G064830	Bhi03G000407	Wax gourd	cuwgoB023
Csa1G064830	Bhi08G001441	Wax gourd	cuwgoB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G064830	Cucumber (Chinese Long) v2	cucuB035
Csa1G064830	Cucumber (Chinese Long) v2	cucuB044
Csa1G064830	Cucumber (Gy14) v1	cgycuB015
Csa1G064830	Cucumber (Gy14) v1	cgycuB087
Csa1G064830	Cucurbita maxima (Rimu)	cmacuB218
Csa1G064830	Cucurbita maxima (Rimu)	cmacuB397
Csa1G064830	Cucurbita maxima (Rimu)	cmacuB649
Csa1G064830	Cucurbita maxima (Rimu)	cmacuB848
Csa1G064830	Cucurbita moschata (Rifu)	cmocuB203
Csa1G064830	Cucurbita moschata (Rifu)	cmocuB380
Csa1G064830	Cucurbita moschata (Rifu)	cmocuB491
Csa1G064830	Cucurbita moschata (Rifu)	cmocuB637
Csa1G064830	Cucurbita moschata (Rifu)	cmocuB835
Csa1G064830	Melon (DHL92) v3.5.1	cumeB040
Csa1G064830	Melon (DHL92) v3.5.1	cumeB083
Csa1G064830	Watermelon (Charleston Gray)	cuwcgB012
Csa1G064830	Watermelon (Charleston Gray)	cuwcgB032
Csa1G064830	Watermelon (Charleston Gray)	cuwcgB035
Csa1G064830	Watermelon (97103) v1	cuwmB008
Csa1G064830	Watermelon (97103) v1	cuwmB043
Csa1G064830	Watermelon (97103) v1	cuwmB067
Csa1G064830	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G064830	Cucurbita pepo (Zucchini)	cpecuB055
Csa1G064830	Cucurbita pepo (Zucchini)	cpecuB474
Csa1G064830	Cucurbita pepo (Zucchini)	cpecuB506
Csa1G064830	Bottle gourd (USVL1VR-Ls)	culsiB012
Csa1G064830	Bottle gourd (USVL1VR-Ls)	culsiB019
Csa1G064830	Cucumber (Gy14) v2	cgybcuB001
Csa1G064830	Cucumber (Gy14) v2	cgybcuB239
Csa1G064830	Melon (DHL92) v3.6.1	cumedB077
Csa1G064830	Silver-seed gourd	carcuB0661
Csa1G064830	Silver-seed gourd	carcuB0814
Csa1G064830	Silver-seed gourd	carcuB0888
Csa1G064830	Silver-seed gourd	carcuB0945
Csa1G064830	Silver-seed gourd	carcuB1020
Csa1G064830	Watermelon (97103) v2	cuwmbB000
Csa1G064830	Watermelon (97103) v2	cuwmbB029
Csa1G064830	Watermelon (97103) v2	cuwmbB032