CU115349 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU115349
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Descriptionsphingoid base hydroxylase 1
LocationChr2 : 7583780 .. 7584121 (-)
Sequence length360
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ACTATACGGCAGCAAGTTTAATTTTTCTACTAGTCCTTTCTTTGTTACATGGGATAGAATACTTGGTACCTATATGCCTTACTTCCTTTGGAGAAGAGAGCAAGCGGCGGCTTTGAAGCACGACCAAAGATTGAATAAATACCGTAAGCAGCAATCAGTTGCTTATATTATATTATTTGTATCCCACAACTATATGATTTGTATATTACTCCTATTGTTGCCATTTTTATACTTTTTCCCCCATTTCCCCTCTCTTCCCTAACATAGATTTGAAACATGAGTTCAGATGAGCTAGGTTGTGTTTTGATATATATATTTTTTAAAAAAATTTATTAATTTTTTAGACGAAAAAACAGAAAC
Library
Library categoryESTs
gynoecious flower library3
Homology
[Close]
BLAST of CU115349 vs. Swiss-Prot
Match: SBH1_ARATH (Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.1e-07
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 2 

Query: 2   LYGSKFNFSTSPFFVTWDRILGTYMPYFLWRRE 61
           LYG+K+NFS  PFFV WDRILGTYMPY L +RE
Sbjct: 214 LYGTKYNFS-QPFFVMWDRILGTYMPYSLEKRE 245

Query: 62   101
           
Sbjct: 274  245

[Close]
BLAST of CU115349 vs. Swiss-Prot
Match: SBH2_ARATH (Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-06
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 2 

Query: 2   LYGSKFNFSTSPFFVTWDRILGTYMPYFLWRR 61
           LYG+K+NFS  PFFV WDRILGTY+PY L +R
Sbjct: 213 LYGTKYNFS-QPFFVMWDRILGTYLPYSLEKR 243

Query: 62   98
           
Sbjct: 273  243

The following BLAST results are available for this feature:
BLAST of CU115349 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SBH1_ARATH8.1e-0775.76Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1[more]
SBH2_ARATH6.9e-0671.88Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1[more]
BLAST of CU115349 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G101090Csa2G101090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0077592G0077592EST
G0130782G0130782EST
G0151787G0151787EST