CU114967 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU114967
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 12589577 .. 12589934 (-)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTTCTTTGCAAGGGATTGTTAGGCCCCCTTGAGGATGATGGAATCCAAACTCTTCCTCTGCGTAGCTGAGCAGTTGCTGGAACGACAGATCGTTTAGGTAAGATATTGGAACCACGAACCGCTTCATTTGAATCTCTCCCACATAAACGGCAACATGGCCTTTTGGAACACCCAACTGTTTTTTGGTTAAACCTGACTGCATCTTCAGAATTTGCTTGACATGAGGAACCAAAGATAGAAAACGAATCCCCATTTTCTTGAGATGAAAGGCTGTCAAAAAGATCTAAAGTTCTGATCTGATTGGTAAGAGCAATCTAGAAGAGGAAATAGTACTTAAAATGAGTTGAATTTTCTGCCCCCGGCCG

Library


Library category	ESTs
fruit (8DPP) library	5

Homology

[Close]

BLAST of CU114967 vs. Swiss-Prot
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.9e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MG R    +P +++ L  ++  + K L  PKG++AVYVGE  MKRFV+P+S+LN   FQ 
Sbjct: 1   MGFR----LPGIRKTLSARNEASSKVLDAPKGYLAVYVGE-NMKRFVIPVSHLNQPLFQD 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLS AEEEFG+ HP GGLTIPC E
Sbjct: 61  LLSQAEEEFGYDHPMGGLTIPCSE 79

Query: 123  182
           
Sbjct: 121  79

Query: 183  242
           
Sbjct: 181  79

Query: 243  255
           
Sbjct: 241  79

[Close]

BLAST of CU114967 vs. Swiss-Prot
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.9e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MG R    +P +++     +  + K + V KG++AVYVGE +M+RFV+P+SYLN  SFQ 
Sbjct: 1   MGFR----LPGIRKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQD 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLS AEEEFG+HHP GGLTIPC E
Sbjct: 61  LLSQAEEEFGYHHPNGGLTIPCSE 79

Query: 123  182
           
Sbjct: 121  79

Query: 183  242
           
Sbjct: 181  79

Query: 243  255
           
Sbjct: 241  79

[Close]

BLAST of CU114967 vs. Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = -2


Query: 3   KQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQLLSYAEEEFGFHHPQGGLTIPCKE 62
           K++ VPKG+ AVYVG+ +M+RF +P+SYLN+ SFQ+LLS AEEEFG+ HP GGLTIPCKE
Sbjct: 22  KRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKE 80

Query: 63   122
           
Sbjct: 82   80

Query: 123  182
           
Sbjct: 142  80

[Close]

BLAST of CU114967 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-17
Identity = 44/68 (64.71%), Postives = 47/68 (69.12%), Query Frame = -2


Query: 3   KMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQLLSYAEEEFGFHHPQG 62
           K+ S  T      PKG +AVYVGE Q KR++VPISYLN  SFQ LLS +EEEFGF HP G
Sbjct: 12  KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 63  GLTIPCKE 122
           GLTIPC E
Sbjct: 72  GLTIPCPE 79

Query: 123  182
           
Sbjct: 132  79

Query: 183  207
           
Sbjct: 192  79

[Close]

BLAST of CU114967 vs. Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-17
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MG R    +P +++     +  + K + VPKG++ VYVG+ +M+RF++P+SYLN  SFQ 
Sbjct: 1   MGFR----LPGIRKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQD 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LL+ AEEEFG+ HP GGLTIPCKE
Sbjct: 61  LLNQAEEEFGYDHPMGGLTIPCKE 79

Query: 123  182
           
Sbjct: 121  79

Query: 183  242
           
Sbjct: 181  79

Query: 243  255
           
Sbjct: 241  79

[Close]

BLAST of CU114967 vs. TrEMBL
Match: A0A0A0LJA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258790 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ
Sbjct: 1   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLSYAEEEFGFHHPQGGLTIPCKE
Sbjct: 61  LLSYAEEEFGFHHPQGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. TrEMBL
Match: A0A0A0LPI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258720 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.5e-34
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MG R LSLVPH KQILKMQSG TK QL VPKGHVAVYVGEIQ KRFVVPISYLND SFQQ
Sbjct: 1   MGFRLLSLVPHAKQILKMQSGFTKNQLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLS+AEEEFGFHHP GGLTIPCKE
Sbjct: 61  LLSHAEEEFGFHHPHGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. TrEMBL
Match: A0A0A0LLF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258700 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIR LSLVPH KQILK+QSGLTK QL VPKGHVAVYVGEIQ KRFVVPISYLN  SF+Q
Sbjct: 1   MGIRLLSLVPHAKQILKIQSGLTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFKQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LL +AEEEFGFHHPQGGLTIPCKE
Sbjct: 61  LLCHAEEEFGFHHPQGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. TrEMBL
Match: A0A0A0LJ99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258740 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MG+  L LVPH K+ILKMQS  TK QL VPKGHVAVYVGEIQ KRFVVP+SYLND SFQQ
Sbjct: 1   MGVPLLCLVPHAKKILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPVSYLNDPSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLS AEEEFGFHHP GGLTIPCKE
Sbjct: 61  LLSRAEEEFGFHHPHGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. TrEMBL
Match: A0A0A0LIZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258760 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIR LSLVP+ KQILK+QSG  K QL VPKGHVA+YVGEIQ KRFVVPISYLN  SFQQ
Sbjct: 1   MGIRLLSLVPYGKQILKIQSGFIKGQLDVPKGHVAIYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LL+++EEEFGFHHPQG LTIPCKE
Sbjct: 61  LLNHSEEEFGFHHPQGALTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. NCBI nr
Match: gi|700206764|gb|KGN61883.1| (hypothetical protein Csa_2G258790 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ
Sbjct: 1   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLSYAEEEFGFHHPQGGLTIPCKE
Sbjct: 61  LLSYAEEEFGFHHPQGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. NCBI nr
Match: gi|659115596|ref|XP_008457635.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 9.3e-35
Identity = 75/84 (89.29%), Postives = 76/84 (90.48%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIR LSLVPH KQ+LKMQSG TK QL VPKGHVAVYVGEIQ KRFVVPISYLN  SFQQ
Sbjct: 1   MGIRLLSLVPHAKQLLKMQSGFTKNQLDVPKGHVAVYVGEIQSKRFVVPISYLNHPSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLSYAEEEFGFHHPQGGLTIPCKE
Sbjct: 61  LLSYAEEEFGFHHPQGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. NCBI nr
Match: gi|700206757|gb|KGN61876.1| (hypothetical protein Csa_2G258720 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.7e-34
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MG R LSLVPH KQILKMQSG TK QL VPKGHVAVYVGEIQ KRFVVPISYLND SFQQ
Sbjct: 1   MGFRLLSLVPHAKQILKMQSGFTKNQLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LLS+AEEEFGFHHP GGLTIPCKE
Sbjct: 61  LLSHAEEEFGFHHPHGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. NCBI nr
Match: gi|659115592|ref|XP_008457632.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIR LSLVPH KQILKMQSG TK +L VPKGHVAVYVGEIQ KRFVVPISYLND SFQQ
Sbjct: 1   MGIRLLSLVPHAKQILKMQSGFTKNRLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LL+ AEEEFGFHHP GGLTIPCKE
Sbjct: 61  LLNRAEEEFGFHHPHGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

[Close]

BLAST of CU114967 vs. NCBI nr
Match: gi|778674175|ref|XP_011650154.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = -2


Query: 3   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 62
           MGIR LSLVPH KQILK+QSGLTK QL VPKGHVAVYVGEIQ KRFVVPISYLN  SF+Q
Sbjct: 1   MGIRLLSLVPHAKQILKIQSGLTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFKQ 60

Query: 63  LLSYAEEEFGFHHPQGGLTIPCKE 122
           LL +AEEEFGFHHPQGGLTIPCKE
Sbjct: 61  LLCHAEEEFGFHHPQGGLTIPCKE 84

Query: 123  182
           
Sbjct: 121  84

Query: 183  242
           
Sbjct: 181  84

Query: 243  255
           
Sbjct: 241  84

The following BLAST results are available for this feature:

BLAST of CU114967 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARG7_VIGRR	7.9e-18	54.76	Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 ...	[more]
AX6B_SOYBN	7.9e-18	54.76	Auxin-induced protein 6B OS=Glycine max PE=2 SV=1	[more]
A10A5_SOYBN	1.0e-17	68.33	Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1	[more]
SAU20_ARATH	5.1e-17	64.71	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
AX10A_SOYBN	6.7e-17	51.19	Auxin-induced protein X10A OS=Glycine max PE=2 SV=1	[more]

BLAST of CU114967 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA3_CUCSA	2.3e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258790 PE=4 SV=1	[more]
A0A0A0LPI0_CUCSA	2.5e-34	88.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258720 PE=4 SV=1	[more]
A0A0A0LLF1_CUCSA	2.1e-33	86.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258700 PE=4 SV=1	[more]
A0A0A0LJ99_CUCSA	2.0e-31	82.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258740 PE=4 SV=1	[more]
A0A0A0LIZ9_CUCSA	1.7e-30	80.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258760 PE=4 SV=1	[more]

BLAST of CU114967 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206764\|gb\|KGN61883.1\|	2.5e-40	100.00	hypothetical protein Csa_2G258790 [Cucumis sativus]	[more]
gi\|659115596\|ref\|XP_008457635.1\|	9.3e-35	89.29	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|700206757\|gb\|KGN61876.1\|	2.7e-34	88.10	hypothetical protein Csa_2G258720 [Cucumis sativus]	[more]
gi\|659115592\|ref\|XP_008457632.1\|	1.8e-33	86.90	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778674175\|ref\|XP_011650154.1\|	2.3e-33	86.90	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G258790	Csa2G258790	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KKX23	FKNP3UI02KKX23	EST
FKNP3UI02L4W7B	FKNP3UI02L4W7B	EST
FKNP3UI02LY01K	FKNP3UI02LY01K	EST
FKNP3UI02MCYTO	FKNP3UI02MCYTO	EST
FKNP3UI02OFX8N	FKNP3UI02OFX8N	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 17..84 score: 7.6
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..84 score: 9.1
None	No IPR available	PANTHER	PTHR31929:SF13	SUBFAMILY NOT NAMED	coord: 2..84 score: 9.1