CU110582 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU110582
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 25104005 .. 25104305 (+)
Sequence length305
The following sequences are available for this feature:

transcribed_cluster sequence

CTAATTATACCTCGAACCAGTTCTTCAGCCTCGGATCTGTCGGTTTTAACCCCAAATTTCCTACTGGGTCGAGTCGAAATGCAGACCACTCGAGTCGAAACGGCTTTCTTTATAGATGAAGGGAGTGGAAGCCATAGCAGGGAGAGTTGGGAAGAAGAATAAGATGGAGTGAATGTGGGGAGAAAATTGCAGAGAAAATGAAAGAGGCATTGGAGAATTTGAAGTACCTTGGAGTTCGACAGGGAGAGAGGATAGCAAAATCCGATGAAGTAAATGGTTGATTTTGTAAATTCCTCGCGTTAGGT
BLAST of CU110582 vs. TrEMBL
Match: A0A0A0KGV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501290 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-12
Identity = 43/65 (66.15%), Postives = 43/65 (66.15%), Query Frame = -1

Query: 3   FLCNFLPTFTXXXXXXXXXXXXXXXXXXIKKAVSTRVVCISTRPSRKFGVKTDRSEAEEL 62
           F   F PTFT                  IKKAVSTRVVCISTRPSRKFGVKTDRSEAEEL
Sbjct: 5   FSLQFSPTFTPSYSSSQLSRLWLPLPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEEL 64

Query: 63  VRGII 122
           VRGII
Sbjct: 65  VRGII 69

Query: 123 182
           
Sbjct: 125 69

Query: 183 198
           
Sbjct: 185 69

BLAST of CU110582 vs. NCBI nr
Match: gi|449451631|ref|XP_004143565.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 43/65 (66.15%), Postives = 43/65 (66.15%), Query Frame = -1

Query: 3   FLCNFLPTFTXXXXXXXXXXXXXXXXXXIKKAVSTRVVCISTRPSRKFGVKTDRSEAEEL 62
           F   F PTFT                  IKKAVSTRVVCISTRPSRKFGVKTDRSEAEEL
Sbjct: 5   FSLQFSPTFTPSYSSSQLSRLWLPLPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEEL 64

Query: 63  VRGII 122
           VRGII
Sbjct: 65  VRGII 69

Query: 123 182
           
Sbjct: 125 69

Query: 183 198
           
Sbjct: 185 69

BLAST of CU110582 vs. NCBI nr
Match: gi|659080204|ref|XP_008440667.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-07
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = -1

Query: 3   IKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGII 62
           +KK  STRVVC+STR SRK GVKTDRSEAEELVRGII
Sbjct: 36  LKKTFSTRVVCVSTRLSRKSGVKTDRSEAEELVRGII 72

Query: 63  114
           
Sbjct: 96  72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KGV8_CUCSA6.5e-1266.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501290 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449451631|ref|XP_004143565.1|1.2e-1166.15PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic ... [more]
gi|659080204|ref|XP_008440667.1|5.3e-0783.78PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G501290Csa6G501290gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02M1WX7FKNP3UI02M1WX7EST
G0044472G0044472EST
H0103906H0103906EST
H0135212H0135212EST