CU107675 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU107675
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 27235732 .. 27237068 (-)
Sequence length439
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGTCAAAATTTCACCTTTTAACTACGGGCGCACGTAACCAATGCATACACACAATGATAAATCAGCCATCTAGGGACCTAAACTAATACATTAAGCATTTGGCATTTTAAGATTGCTCAAAACCCAATGCATATGAGATTTAGAGGTTAAATACATCTTTCTAAACAATTGTACATAAATTCTGCCTCTAAAAGCCGAAGTAATAACATACCATATGTCAGCCAGCACGTTTCTTTGTTCTTCAGTTTTGATTGTTGTTGTTCGTAATAGACTTGTACAATGTAATAACAAATGAGTAAAATTTCATCTTTTCCACTTGTCAATCTCCTTTGAAGTAGCTCGGATAAGTCTCTTTGTATTTAGGACAAGGTCGTCAACAAGCGCGCCGATATCGTCCTGATGAGGAAAAATACTTTGACGACCACGCAATACATCCCCC
Homology
[Close]
BLAST of CU107675 vs. TrEMBL
Match: A0A0A0KSM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646690 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
Sbjct: 101 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 144

Query: 367  426
           
Sbjct: 161  144

Query: 427  439
           
Sbjct: 221  144

[Close]
BLAST of CU107675 vs. TrEMBL
Match: A0A059BYF4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04100 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+V  G  S+ P QD+IGALVDDLV+NTK+LI ATS+EIDKW+R
Sbjct: 64  GNVFNGSGSL-PTQDEIGALVDDLVINTKKLISATSREIDKWRR 106

Query: 367  426
           
Sbjct: 124  106

Query: 427  439
           
Sbjct: 184  106

[Close]
BLAST of CU107675 vs. TrEMBL
Match: A0A059BXQ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04100 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+V  G  S+ P QD+IGALVDDLV+NTK+LI ATS+EIDKW+R
Sbjct: 104 GNVFNGSGSL-PTQDEIGALVDDLVINTKKLISATSREIDKWRR 146

Query: 367  426
           
Sbjct: 164  146

Query: 427  439
           
Sbjct: 224  146

[Close]
BLAST of CU107675 vs. TrEMBL
Match: A0A0B2R6S3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033012 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+  RG +SI   +DDI ALVDDLV+NTK+LI+ATSKEIDKW+R
Sbjct: 91  GNPFRGSRSIIS-EDDITALVDDLVINTKKLIKATSKEIDKWRR 133

Query: 367  426
           
Sbjct: 151  133

Query: 427  439
           
Sbjct: 211  133

[Close]
BLAST of CU107675 vs. TrEMBL
Match: I1L3L5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G154800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+  RG +SI   +DDI ALVDDLV+NTK+LI+ATSKEIDKW+R
Sbjct: 91  GNPFRGSRSIIS-EDDITALVDDLVINTKKLIKATSKEIDKWRR 133

Query: 367  426
           
Sbjct: 151  133

Query: 427  439
           
Sbjct: 211  133

[Close]
BLAST of CU107675 vs. NCBI nr
Match: gi|449447517|ref|XP_004141514.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
Sbjct: 101 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 144

Query: 367  426
           
Sbjct: 161  144

Query: 427  439
           
Sbjct: 221  144

[Close]
BLAST of CU107675 vs. NCBI nr
Match: gi|659119131|ref|XP_008459493.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           GDVLRG QSIFPHQDDIGALVDDLVLNTKRLIRATS+EIDKWKR
Sbjct: 101 GDVLRGHQSIFPHQDDIGALVDDLVLNTKRLIRATSREIDKWKR 144

Query: 367  426
           
Sbjct: 161  144

Query: 427  439
           
Sbjct: 221  144

[Close]
BLAST of CU107675 vs. NCBI nr
Match: gi|702381809|ref|XP_010063733.1| (PREDICTED: glycine-rich cell wall structural protein 2 [Eucalyptus grandis])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+V  G  S+ P QD+IGALVDDLV+NTK+LI ATS+EIDKW+R
Sbjct: 104 GNVFNGSGSL-PTQDEIGALVDDLVINTKKLISATSREIDKWRR 146

Query: 367  426
           
Sbjct: 164  146

Query: 427  439
           
Sbjct: 224  146

[Close]
BLAST of CU107675 vs. NCBI nr
Match: gi|629105525|gb|KCW70994.1| (hypothetical protein EUGRSUZ_F04100 [Eucalyptus grandis])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+V  G  S+ P QD+IGALVDDLV+NTK+LI ATS+EIDKW+R
Sbjct: 64  GNVFNGSGSL-PTQDEIGALVDDLVINTKKLISATSREIDKWRR 106

Query: 367  426
           
Sbjct: 124  106

Query: 427  439
           
Sbjct: 184  106

[Close]
BLAST of CU107675 vs. NCBI nr
Match: gi|356530965|ref|XP_003534049.1| (PREDICTED: keratin, type II cuticular Hb4-like [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -2 

Query: 307 GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR 366
           G+  RG +SI   +DDI ALVDDLV+NTK+LI+ATSKEIDKW+R
Sbjct: 91  GNPFRGSRSIIS-EDDITALVDDLVINTKKLIKATSKEIDKWRR 133

Query: 367  426
           
Sbjct: 151  133

Query: 427  439
           
Sbjct: 211  133

The following BLAST results are available for this feature:
BLAST of CU107675 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSM8_CUCSA8.2e-16100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646690 PE=4 SV=1[more]
A0A059BYF4_EUCGR9.1e-0768.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04100 PE=4 SV=1[more]
A0A059BXQ6_EUCGR9.1e-0768.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04100 PE=4 SV=1[more]
A0A0B2R6S3_GLYSO2.0e-0668.18Uncharacterized protein OS=Glycine soja GN=glysoja_033012 PE=4 SV=1[more]
I1L3L5_SOYBN2.0e-0668.18Uncharacterized protein OS=Glycine max GN=GLYMA_09G154800 PE=4 SV=1[more]
BLAST of CU107675 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447517|ref|XP_004141514.1|1.8e-16100.00PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus][more]
gi|659119131|ref|XP_008459493.1|1.5e-1595.45PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo][more]
gi|702381809|ref|XP_010063733.1|2.0e-0768.18PREDICTED: glycine-rich cell wall structural protein 2 [Eucalyptus grandis][more]
gi|629105525|gb|KCW70994.1|2.0e-0768.18hypothetical protein EUGRSUZ_F04100 [Eucalyptus grandis][more]
gi|356530965|ref|XP_003534049.1|4.5e-0768.18PREDICTED: keratin, type II cuticular Hb4-like [Glycine max][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa5G646690Csa5G646690gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KW6BFFKNP3UI02KW6BFEST
FKNP3UI02MVY47FKNP3UI02MVY47EST
FKNP3UI02O66VUFKNP3UI02O66VUEST
G0001983G0001983EST
G0052014G0052014EST
G0056881G0056881EST
G0069330G0069330EST
G0082548G0082548EST
G0096522G0096522EST
G0107588G0107588EST
G0183345G0183345EST
G0186882G0186882EST
G0188207G0188207EST
H0035860H0035860EST
H0042945H0042945EST
H0082781H0082781EST
H0088514H0088514EST
H0088527H0088527EST
H0090326H0090326EST
H0090959H0090959EST
H0091209H0091209EST
H0097251H0097251EST
H0117677H0117677EST
H0141185H0141185EST