CU107562 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU107562
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 18269493 .. 18269991 (-)
Sequence length503
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ACATTAATGGCAGGGAAAAGTAATGAAACAACCCTCTCAAAAGGGTGAGAAACTAGGGTAGAATACTAAGGAACTCAGCATGGATGATCCAAATCTTTACAACAACGATAAAATTTTCGATAATCTTCTTTGAACAAACTAGAATTCACTACAGGGAATTTTGCGACATAGGGAAGTGTTGGAAAGAAAAAAAAGTCAAGCGAATGAAAAAAAGTCATTGGAGATGGTTGTTGAGAAAACTTCATCAGGAGACTTTTTGCCAACGACGCTAACAAGTGTCAAGAAGAGGGTTCGGCAACCTTCAAAGGGATCAAATGCAACGTACCAATCCAGAAAATTTTGGGGCATTTTGTGTTAGATTTTCACATGAAAGTATTGTGTGTGAATATTTGTGAGATACATATTTTATTAGAATAAGAAAAAACAAATGGTTATCATGGATTCAAAAAGACAAGATTTGAGAAAGAATGGGTTTAAAAGTATAAATGCTGTTTGTGTTAAAC
Homology
[Close]
BLAST of CU107562 vs. TrEMBL
Match: A0A0A0LA58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354530 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 2 

Query: 224 MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSR 283
           MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQS+
Sbjct: 1   MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSK 37

Query: 284  335
           
Sbjct: 61   37

[Close]
BLAST of CU107562 vs. TrEMBL
Match: A0A0A0LA58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354530 PE=4 SV=1)

HSP 1 Score: 30.0 bits (66), Expect = 3.3e+03
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 1 

Query: 334 KILGHFVLDFHMKVL 379
           K LGHFVLDFHMK L
Sbjct: 37  KNLGHFVLDFHMKKL 51

[Close]
BLAST of CU107562 vs. NCBI nr
Match: gi|700202726|gb|KGN57859.1| (hypothetical protein Csa_3G354530 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 2 

Query: 224 MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSR 283
           MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQS+
Sbjct: 1   MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSK 37

Query: 284  335
           
Sbjct: 61   37

The following BLAST results are available for this feature:
BLAST of CU107562 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA58_CUCSA2.0e-1097.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354530 PE=4 SV=1[more]
A0A0A0LA58_CUCSA3.3e+0386.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354530 PE=4 SV=1[more]
BLAST of CU107562 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202726|gb|KGN57859.1|2.9e-1097.30hypothetical protein Csa_3G354530 [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G354530Csa3G354530gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0009294G0009294EST
G0016374G0016374EST
G0017375G0017375EST
G0024081G0024081EST
G0050824G0050824EST
G0058518G0058518EST
G0084445G0084445EST
H0014347H0014347EST
H0046834H0046834EST
H0142397H0142397EST
H0172025H0172025EST