CU105858 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU105858
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLYR motif-containing protein 4
LocationChr1 : 1692503 .. 1693035 (+)
Sequence length544
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GAAAGAAAAGTCTTCGTCAAATCCCTAAACTTTCTTTCACTAAACTATTCTATCGATTTCTTCGAAAAATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGAATACGGAAGCTCTTTTTCCTTAATTTATTGTAATTCTAATTCTATTGTGATAGATTTCGTGAGTAAGGGTTTATTTCTGCTTCACGGATCATACCTTTTCTACTAAGAATTTAATAAATCGTTTGAGTAATTAATCCTTGACTGTGGGATGAAATATGAAATATTTGGTGATGAATGAAAACATGATTACACTGATCTTACCT
Homology
[Close]
BLAST of CU105858 vs. Swiss-Prot
Match: LYRM4_MOUSE (LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MA+ +R++ L L R+++R ++HFS YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1   MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 129 AQLEVAKRQSAVYSLY 188
             LE+ +RQ  +  LY
Sbjct: 61  RDLEIIRRQVHIGQLY 76

Query: 189  248
           
Sbjct: 121  76

Query: 249  297
           
Sbjct: 181  76

[Close]
BLAST of CU105858 vs. Swiss-Prot
Match: LYRM4_TAEGU (LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.1e-10
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MA+ +R++ L L R+L+R ++ FS YN R YA RR  D FR N+N++D   I       K
Sbjct: 1   MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIME 188
           A LEV +RQ  +  +Y  + K I+E
Sbjct: 61  ANLEVIQRQGTIDHMYATE-KLIIE 84

Query: 189  248
           
Sbjct: 121  84

Query: 249  308
           
Sbjct: 181  84

Query: 309  324
           
Sbjct: 241  84

[Close]
BLAST of CU105858 vs. Swiss-Prot
Match: LYRM4_HUMAN (LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MA+ +R++ LSL R+++R ++ FS YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1   MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 129 AQLEVAKRQSAVYSLY 188
             L V +RQ  +  LY
Sbjct: 61  RDLGVIRRQVHIGQLY 76

Query: 189  248
           
Sbjct: 121  76

Query: 249  297
           
Sbjct: 181  76

[Close]
BLAST of CU105858 vs. Swiss-Prot
Match: LYRM4_BOVIN (LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MA+ +R++ L L R+++R ++ F  YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1   MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 129 AQLEVAKRQSAVYSLY 188
             L + +RQ  +  +Y
Sbjct: 61  RDLGIIRRQVHIGQMY 76

Query: 189  248
           
Sbjct: 121  76

Query: 249  297
           
Sbjct: 181  76

[Close]
BLAST of CU105858 vs. Swiss-Prot
Match: ISD11_YEAST (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-08
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 3 

Query: 75  SPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQ 134
           +PTR + LSL +  I+ A  F++YN REY   +    FR N N  DP  + + + + K  
Sbjct: 6   APTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKND 65

Query: 135 LEVAKRQSAVYSLY 194
           L V KRQS +  +Y
Sbjct: 66  LGVLKRQSVISQMY 79

Query: 195  254
           
Sbjct: 126  79

Query: 255  297
           
Sbjct: 186  79

[Close]
BLAST of CU105858 vs. TrEMBL
Match: A0A0A0LPH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G012090 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.2e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1   MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 188
           AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
Sbjct: 61  AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

Query: 189  248
           
Sbjct: 121  90

Query: 249  308
           
Sbjct: 181  90

Query: 309  339
           
Sbjct: 241  90

[Close]
BLAST of CU105858 vs. TrEMBL
Match: K4BL51_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1   MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 188
           +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61  SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

Query: 189  248
           
Sbjct: 121  88

Query: 249  308
           
Sbjct: 181  88

Query: 309  333
           
Sbjct: 241  88

[Close]
BLAST of CU105858 vs. TrEMBL
Match: A0A0V0GXH7_SOLCH (Putative LYR motif-containing protein 4-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1   MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 188
           +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61  SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

Query: 189  248
           
Sbjct: 121  88

Query: 249  308
           
Sbjct: 181  88

Query: 309  333
           
Sbjct: 241  88

[Close]
BLAST of CU105858 vs. TrEMBL
Match: M1CAK5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024653 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1   MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 188
           +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61  SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

Query: 189  248
           
Sbjct: 121  88

Query: 249  308
           
Sbjct: 181  88

Query: 309  333
           
Sbjct: 241  88

[Close]
BLAST of CU105858 vs. TrEMBL
Match: A0A059D0E2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00568 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.3e-26
Identity = 57/87 (65.52%), Postives = 75/87 (86.21%), Query Frame = 3 

Query: 72  ASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKA 131
           A+P++ E L+LLRSL+RTAR F DYN+REY KRRA+DGFRH + L+DP +I++A+ADGK+
Sbjct: 8   AAPSKPEVLALLRSLLRTAREFRDYNVREYTKRRALDGFRHGQGLADPSAIAAAFADGKS 67

Query: 132 QLEVAKRQSAVYSLYGPKVKSIMEAHR 191
           QLEVA+RQ+ VYSLY P+VKS+ME  R
Sbjct: 68  QLEVARRQAVVYSLYAPEVKSVMELQR 94

Query: 192  251
           
Sbjct: 128  94

Query: 252  311
           
Sbjct: 188  94

Query: 312  333
           
Sbjct: 248  94

[Close]
BLAST of CU105858 vs. NCBI nr
Match: gi|778656045|ref|XP_011660289.1| (PREDICTED: LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 5.8e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1   MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 188
           AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
Sbjct: 61  AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

Query: 189  248
           
Sbjct: 121  90

Query: 249  308
           
Sbjct: 181  90

Query: 309  339
           
Sbjct: 241  90

[Close]
BLAST of CU105858 vs. NCBI nr
Match: gi|659106081|ref|XP_008453246.1| (PREDICTED: LYR motif-containing protein 4 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1   MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 188
           AQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Sbjct: 61  AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

Query: 189  248
           
Sbjct: 121  90

Query: 249  308
           
Sbjct: 181  90

Query: 309  339
           
Sbjct: 241  90

[Close]
BLAST of CU105858 vs. NCBI nr
Match: gi|695022304|ref|XP_009398276.1| (PREDICTED: LYR motif-containing protein 4-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 125.6 bits (314), Expect = 9.0e-26
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 3 

Query: 72  ASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKA 131
           +S +R+E LSL RSL+RTA  FSDYNIREYAKRRA+DGFR NR L+DP SI +A+ADGK+
Sbjct: 3   SSASRAEVLSLFRSLLRTATKFSDYNIREYAKRRAIDGFRDNRGLTDPSSIVAAFADGKS 62

Query: 132 QLEVAKRQSAVYSLYGPKVKSIMEA 191
           QLEVAKRQ+ VYSLY P++KS+MEA
Sbjct: 63  QLEVAKRQAVVYSLYAPRIKSVMEA 87

Query: 192  251
           
Sbjct: 123  87

Query: 252  311
           
Sbjct: 183  87

Query: 312  327
           
Sbjct: 243  87

[Close]
BLAST of CU105858 vs. NCBI nr
Match: gi|460380605|ref|XP_004236045.1| (PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum])

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1   MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 188
           +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61  SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

Query: 189  248
           
Sbjct: 121  88

Query: 249  308
           
Sbjct: 181  88

Query: 309  333
           
Sbjct: 241  88

[Close]
BLAST of CU105858 vs. NCBI nr
Match: gi|697139318|ref|XP_009623746.1| (PREDICTED: LYR motif-containing protein 4 [Nicotiana tomentosiformis])

HSP 1 Score: 123.6 bits (309), Expect = 3.4e-25
Identity = 57/85 (67.06%), Postives = 73/85 (85.88%), Query Frame = 3 

Query: 69  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 128
           MASP+R E L+L RSL++TAR F DYNIREY KRR +DGFR N++LSDP  +++A+++G+
Sbjct: 1   MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 129 AQLEVAKRQSAVYSLYGPKVKSIME 188
           AQLEVAKRQ+ VYSLY PKVKS+ME
Sbjct: 61  AQLEVAKRQAVVYSLYAPKVKSVME 85

Query: 189  248
           
Sbjct: 121  85

Query: 249  308
           
Sbjct: 181  85

Query: 309  324
           
Sbjct: 241  85

The following BLAST results are available for this feature:
BLAST of CU105858 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LYRM4_MOUSE1.4e-1042.11LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1[more]
LYRM4_TAEGU4.1e-1041.18LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1[more]
LYRM4_HUMAN1.2e-0942.11LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1[more]
LYRM4_BOVIN2.9e-0836.84LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1[more]
ISD11_YEAST5.0e-0837.84Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 ... [more]
BLAST of CU105858 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPH2_CUCSA8.2e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G012090 PE=3 SV=1[more]
K4BL51_SOLLC2.8e-2664.77Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
A0A0V0GXH7_SOLCH2.8e-2664.77Putative LYR motif-containing protein 4-like OS=Solanum chacoense PE=3 SV=1[more]
M1CAK5_SOLTU2.8e-2664.77Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024653 PE=3 SV=1[more]
A0A059D0E2_EUCGR6.3e-2665.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00568 PE=3 SV=1[more]
BLAST of CU105858 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656045|ref|XP_011660289.1|5.8e-41100.00PREDICTED: LYR motif-containing protein 4 [Cucumis sativus][more]
gi|659106081|ref|XP_008453246.1|1.5e-3691.11PREDICTED: LYR motif-containing protein 4 [Cucumis melo][more]
gi|695022304|ref|XP_009398276.1|9.0e-2671.76PREDICTED: LYR motif-containing protein 4-like [Musa acuminata subsp. malaccensi... [more]
gi|460380605|ref|XP_004236045.1|2.0e-2564.77PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum][more]
gi|697139318|ref|XP_009623746.1|3.4e-2567.06PREDICTED: LYR motif-containing protein 4 [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G012090Csa1G012090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MANZPFKNP3UI02MANZPEST
FKNP3UI02MHQQ7FKNP3UI02MHQQ7EST
G0099016G0099016EST
G0106799G0106799EST
G0135439G0135439EST
G0166321G0166321EST
G0183887G0183887EST
H0063894H0063894EST
H0064600H0064600EST
H0079320H0079320EST
H0100226H0100226EST
H0144933H0144933EST
H0153250H0153250EST
H0159200H0159200EST
H0170582H0170582EST
H0173075H0173075EST
H0191797H0191797EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
score: 1.8
NoneNo IPR availablePANTHERPTHR13166PROTEIN C6ORF149coord: 1..89
score: 3.5