Csa1G012090 (gene) Cucumber (Chinese Long) v2

NameCsa1G012090
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLYR motif-containing protein 4B; contains IPR008011 (Complex 1 LYR protein)
LocationChr1 : 1692489 .. 1693034 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTGATGCCAAAGAAAGTCTTCGTCAAATCCCTAAACTTTCTTTCACTAAACTATTCTATCGATTTCTTCGAAAATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGAATACGGAAGCTCTTTTTCCTTAATTTATTGTAATTCTAATTCTATTGTGATAGATTTCGTGAGTAAGGGTTTATTTCTGCTTCACGGATCATACCTTTTCTACTAAGAATTTAATAAATCGTTTGAGTAATTAATCCTTGACTGTGGGATGAAATATGAAATATTTGGTGATGATGAAAACATGATTACACTGATCTT

mRNA sequence

ATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA

Coding sequence (CDS)

ATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA

Protein sequence

MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN*
BLAST of Csa1G012090 vs. Swiss-Prot
Match: LYRM4_MOUSE (LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ L L R+++R ++HFS YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAVYSLY 77
            LE+ +RQ  +  LY
Sbjct: 61 RDLEIIRRQVHIGQLY 76

BLAST of Csa1G012090 vs. Swiss-Prot
Match: LYRM4_TAEGU (LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-10
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ L L R+L+R ++ FS YN R YA RR  D FR N+N++D   I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIME 86
          A LEV +RQ  +  +Y  + K I+E
Sbjct: 61 ANLEVIQRQGTIDHMYATE-KLIIE 84

BLAST of Csa1G012090 vs. Swiss-Prot
Match: LYRM4_HUMAN (LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-10
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ LSL R+++R ++ FS YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQSAVYSLY 77
            L V +RQ  +  LY
Sbjct: 61 RDLGVIRRQVHIGQLY 76

BLAST of Csa1G012090 vs. Swiss-Prot
Match: LYRM4_BOVIN (LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-08
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ L L R+++R ++ F  YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAVYSLY 77
            L + +RQ  +  +Y
Sbjct: 61 RDLGIIRRQVHIGQMY 76

BLAST of Csa1G012090 vs. Swiss-Prot
Match: ISD11_YEAST (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1

Query: 3  SPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQ 62
          +PTR + LSL +  I+ A  F++YN REY   +    FR N N  DP  + + + + K  
Sbjct: 6  APTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKND 65

Query: 63 LEVAKRQSAVYSLY 77
          L V KRQS +  +Y
Sbjct: 66 LGVLKRQSVISQMY 79

BLAST of Csa1G012090 vs. TrEMBL
Match: A0A0A0LPH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G012090 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 91
          AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

BLAST of Csa1G012090 vs. TrEMBL
Match: K4BL51_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 89
          +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

BLAST of Csa1G012090 vs. TrEMBL
Match: A0A0V0GXH7_SOLCH (Putative LYR motif-containing protein 4-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 89
          +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

BLAST of Csa1G012090 vs. TrEMBL
Match: M1CAK5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024653 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 89
          +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

BLAST of Csa1G012090 vs. TrEMBL
Match: A0A059D0E2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00568 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-26
Identity = 57/87 (65.52%), Postives = 75/87 (86.21%), Query Frame = 1

Query: 2  ASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKA 61
          A+P++ E L+LLRSL+RTAR F DYN+REY KRRA+DGFRH + L+DP +I++A+ADGK+
Sbjct: 8  AAPSKPEVLALLRSLLRTAREFRDYNVREYTKRRALDGFRHGQGLADPSAIAAAFADGKS 67

Query: 62 QLEVAKRQSAVYSLYGPKVKSIMEAHR 89
          QLEVA+RQ+ VYSLY P+VKS+ME  R
Sbjct: 68 QLEVARRQAVVYSLYAPEVKSVMELQR 94

BLAST of Csa1G012090 vs. TAIR10
Match: AT5G61220.1 (AT5G61220.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-21
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1

Query: 7  SEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVA 66
          SE LSL R+L+R  R F DYNIREY+KRR +DGFR N+NL+DP  ++ AYA+ K QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQSAVYSLYGPKVKSIME 86
          +R   VY  Y PK K+IME
Sbjct: 65 ERVLKVYLAYPPKTKNIME 83

BLAST of Csa1G012090 vs. NCBI nr
Match: gi|778656045|ref|XP_011660289.1| (PREDICTED: LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 5.9e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 91
          AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

BLAST of Csa1G012090 vs. NCBI nr
Match: gi|659106081|ref|XP_008453246.1| (PREDICTED: LYR motif-containing protein 4 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-37
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 91
          AQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

BLAST of Csa1G012090 vs. NCBI nr
Match: gi|695022304|ref|XP_009398276.1| (PREDICTED: LYR motif-containing protein 4-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 1

Query: 2  ASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKA 61
          +S +R+E LSL RSL+RTA  FSDYNIREYAKRRA+DGFR NR L+DP SI +A+ADGK+
Sbjct: 3  SSASRAEVLSLFRSLLRTATKFSDYNIREYAKRRAIDGFRDNRGLTDPSSIVAAFADGKS 62

Query: 62 QLEVAKRQSAVYSLYGPKVKSIMEA 87
          QLEVAKRQ+ VYSLY P++KS+MEA
Sbjct: 63 QLEVAKRQAVVYSLYAPRIKSVMEA 87

BLAST of Csa1G012090 vs. NCBI nr
Match: gi|460380605|ref|XP_004236045.1| (PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASP+R E L+L RSL+RTAR F DYN+REY KRR +DGFR N++LSDP  +++A++DG+
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHR 89
          +QLEVAKRQ+ VYSLY PKVKS+ME ++
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMELNQ 88

BLAST of Csa1G012090 vs. NCBI nr
Match: gi|697139318|ref|XP_009623746.1| (PREDICTED: LYR motif-containing protein 4 [Nicotiana tomentosiformis])

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-26
Identity = 57/85 (67.06%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASP+R E L+L RSL++TAR F DYNIREY KRR +DGFR N++LSDP  +++A+++G+
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKVKSIME 86
          AQLEVAKRQ+ VYSLY PKVKS+ME
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVME 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LYRM4_MOUSE7.1e-1142.11LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1[more]
LYRM4_TAEGU2.1e-1041.18LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1[more]
LYRM4_HUMAN6.0e-1042.11LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1[more]
LYRM4_BOVIN1.5e-0836.84LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1[more]
ISD11_YEAST2.5e-0837.84Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 ... [more]
Match NameE-valueIdentityDescription
A0A0A0LPH2_CUCSA4.1e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G012090 PE=3 SV=1[more]
K4BL51_SOLLC1.4e-2664.77Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
A0A0V0GXH7_SOLCH1.4e-2664.77Putative LYR motif-containing protein 4-like OS=Solanum chacoense PE=3 SV=1[more]
M1CAK5_SOLTU1.4e-2664.77Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024653 PE=3 SV=1[more]
A0A059D0E2_EUCGR3.2e-2665.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00568 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G61220.14.7e-2159.49 LYR family of Fe/S cluster biogenesis protein[more]
Match NameE-valueIdentityDescription
gi|778656045|ref|XP_011660289.1|5.9e-42100.00PREDICTED: LYR motif-containing protein 4 [Cucumis sativus][more]
gi|659106081|ref|XP_008453246.1|1.5e-3791.11PREDICTED: LYR motif-containing protein 4 [Cucumis melo][more]
gi|695022304|ref|XP_009398276.1|1.2e-2671.76PREDICTED: LYR motif-containing protein 4-like [Musa acuminata subsp. malaccensi... [more]
gi|460380605|ref|XP_004236045.1|2.0e-2664.77PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum][more]
gi|697139318|ref|XP_009623746.1|3.5e-2667.06PREDICTED: LYR motif-containing protein 4 [Nicotiana tomentosiformis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU105858cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G012090.1Csa1G012090.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105858CU105858transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
score: 1.8
NoneNo IPR availablePANTHERPTHR13166PROTEIN C6ORF149coord: 1..89
score: 3.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G012090Csa1G039010Cucumber (Chinese Long) v2cucuB000