CU104002 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU104002
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein TIME FOR COFFEE-like protein
LocationChr6 : 19768821 .. 19769806 (-)
Sequence length1121
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CCAACCGGAAACGTAGCTATCCCTCCTGCCATCCTGTTACACTCGGAGGCAGCAGCACTACTGATCCTGCAAAGGCTGTTGCTGCTGCTGCTGCGGCGGCTAACAATATGAAAGGTGGTGGTGGTTTGCCCACACAAGCCATTCTCCATCCTGCTCAGTTTGCTGCTGCACAGTCTTCTGGTAATCCTCATCAACTTGTACCTGCAGGTTTCCCTTACGTGCATACAGCTGCAGTGCAAGTGAAATCGACAGAGCAAAAACAACCTGCGGGTGGGTAGAGGATTTCGGCTCTTGTTCTTTAACCAACCCATCCAGCTATTACTATTTCGAATCGGGACTGTAGACTTGTGAATGATGATGTTTCTTGCCCGGGGAAGTGACAGTGGGCGTATCTTATGGCAGCCTGAGAAGAAATGAACGTTCAAATAGGAGCGCGAAAGCAGAACGACAGTCTGAATGCCTTGTCGGACTCTTGAACCCACAATTTTGGGAAAGCTATGAGAGGAAGTGGGAAATATTGTCCTCCCCCGTTTGAGATGGGCTCTCAGATGTGGGTTGTTCAGTTATCTGTCTGGATTGATGACGATGTTTAAATATGGTTTGGGTCTGGATGGGGAAAGGAAAAGACAATCCAAAGAAGAATCTTTGAAGCAAGACACACGGCACAGCGAACCATATGAATGATGATGACAATGGAATGAAGGAGAGAGGAAAAGCAAGAAAGATATCCTTTTCCTTTCCTTTCCTTTCTTTTCCTTTCCTTACCTTTGGCTGGTGGGTTGTAATGGTGGAGGTTCTTTTTCTTCCTTAAAATATTTGATTTCATTCCCTTTTTGAGGTTTATTTCTCTCTTTAAGCTCCCTTTAGAAACAGTATCATCATCTCTCTTTAACATATATATAATATATATATATGTGCAGTGAAGGAAAAAGAGGGTGTAGTTGTATATGTTTGGCACATATCACAATGGGTTATCCCTCAAATTTTCATGATGTGAAAAACCCTTATAAATTCTCGACGGGGGCCACGATGCCCATTTCGGCCTTCCTGATTCGGATCACAATTCCCTGTCCCTCATTTTAGGATTCCGTGATTGGAAAGACCAAGACGTTACCCAGCTT
Homology
[Close]
BLAST of CU104002 vs. TrEMBL
Match: A0A0A0KJV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424020 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-33
Identity = 75/101 (74.26%), Postives = 75/101 (74.26%), Query Frame = -2 

Query: 593 MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAXXXXXXXXXXXXXXYLSC 652
           MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPA              YLSC
Sbjct: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60

Query: 653 FXXXXXXXXXXXXMVRCAVCLASKILLWIVFSFPHPDPNHI 712
           F            MVRCAVCLASKILLWIVFSFPHPDPNHI
Sbjct: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 101

Query: 713  772
           
Sbjct: 121  101

Query: 773  832
           
Sbjct: 181  101

Query: 833  892
           
Sbjct: 241  101

Query: 893  896
           
Sbjct: 301  101

[Close]
BLAST of CU104002 vs. TrEMBL
Match: A0A0A0KI38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424520 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.4e-33
Identity = 73/85 (85.88%), Postives = 73/85 (85.88%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            CHPVTLGGSSTTDP           NNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA
Sbjct: 1498 CHPVTLGGSSTTDPAKAVAAAAAAANNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 1557

Query: 87   GFPYVHTAAVQVKSTEQKQPAGG*R 146
            GFPYVHTAAVQVKSTEQKQPAGG R
Sbjct: 1558 GFPYVHTAAVQVKSTEQKQPAGGLR 1582

Query: 147   206
            
Sbjct: 1618  1582

Query: 207   266
            
Sbjct: 1678  1582

Query: 267   282
            
Sbjct: 1738  1582

[Close]
BLAST of CU104002 vs. TrEMBL
Match: A0A0A0KI38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424520 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 2 

Query: 398  GSLRRNERSNRSAKAERQSECLVGLLNPQFWESYERKWEILSSPV 457
            G LRRNERSNRSAKAERQSECLVGLLNPQFWESYERKWEILSSPV
Sbjct: 1579 GGLRRNERSNRSAKAERQSECLVGLLNPQFWESYERKWEILSSPV 1623

Query: 458   517
            
Sbjct: 1639  1623

Query: 518   533
            
Sbjct: 1699  1623


HSP 2 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            C  VTL  +ST DP           +N+KGGGGLP+Q ILH AQF  AQSSG+PHQLVPA
Sbjct: 1515 CTSVTLANASTCDPVKAVAA-----SNLKGGGGLPSQNILHAAQFTVAQSSGSPHQLVPA 1574

Query: 87   GFPYVH--TAAVQVKSTEQKQPAG 146
            GF Y+H   + VQVK  EQKQPAG
Sbjct: 1575 GFSYIHPVPSTVQVKPAEQKQPAG 1593

Query: 147   206
            
Sbjct: 1635  1593

Query: 207   266
            
Sbjct: 1695  1593

Query: 267   273
            
Sbjct: 1755  1593

[Close]
BLAST of CU104002 vs. TrEMBL
Match: A0A059B3J1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03537 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            C  VTL  +ST DP           +N+KGGGGLP+Q ILH AQF  AQSSG+PHQLVPA
Sbjct: 1515 CTSVTLANASTCDPVKAVAA-----SNLKGGGGLPSQNILHAAQFTVAQSSGSPHQLVPA 1574

Query: 87   GFPYVH--TAAVQVKSTEQKQPAG 146
            GF Y+H   + VQVK  EQKQPAG
Sbjct: 1575 GFSYIHPVPSTVQVKPAEQKQPAG 1593

Query: 147   206
            
Sbjct: 1635  1593

Query: 207   266
            
Sbjct: 1695  1593

Query: 267   273
            
Sbjct: 1755  1593

[Close]
BLAST of CU104002 vs. TrEMBL
Match: B9HJW4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15060g PE=4 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 52/84 (61.90%), Postives = 57/84 (67.86%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            CHPVTL  +STTDP           NNMKGGG LP Q ++H AQFAA Q SG PHQ++PA
Sbjct: 1521 CHPVTLANTSTTDPAKAVAAAS---NNMKGGG-LPPQGLIH-AQFAAVQPSGKPHQILPA 1580

Query: 87   GFPYVH--TAAVQVKSTEQKQPAG 146
            GF YVH    AVQVK  EQKQPAG
Sbjct: 1581 GFHYVHPVPTAVQVKPAEQKQPAG 1599

Query: 147   206
            
Sbjct: 1641  1599

Query: 207   266
            
Sbjct: 1701  1599

Query: 267   273
            
Sbjct: 1761  1599

[Close]
BLAST of CU104002 vs. NCBI nr
Match: gi|700192808|gb|KGN48012.1| (hypothetical protein Csa_6G424520 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 73/85 (85.88%), Postives = 73/85 (85.88%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            CHPVTLGGSSTTDP           NNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA
Sbjct: 1498 CHPVTLGGSSTTDPAKAVAAAAAAANNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 1557

Query: 87   GFPYVHTAAVQVKSTEQKQPAGG*R 146
            GFPYVHTAAVQVKSTEQKQPAGG R
Sbjct: 1558 GFPYVHTAAVQVKSTEQKQPAGGLR 1582

Query: 147   206
            
Sbjct: 1618  1582

Query: 207   266
            
Sbjct: 1678  1582

Query: 267   282
            
Sbjct: 1738  1582

[Close]
BLAST of CU104002 vs. NCBI nr
Match: gi|778716638|ref|XP_011657572.1| (PREDICTED: protein TIME FOR COFFEE isoform X2 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 72/83 (86.75%), Postives = 72/83 (86.75%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            CHPVTLGGSSTTDP           NNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA
Sbjct: 1502 CHPVTLGGSSTTDPAKAVAAAAAAANNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 1561

Query: 87   GFPYVHTAAVQVKSTEQKQPAGG 146
            GFPYVHTAAVQVKSTEQKQPAGG
Sbjct: 1562 GFPYVHTAAVQVKSTEQKQPAGG 1584

Query: 147   206
            
Sbjct: 1622  1584

Query: 207   266
            
Sbjct: 1682  1584

Query: 267   276
            
Sbjct: 1742  1584

[Close]
BLAST of CU104002 vs. NCBI nr
Match: gi|700192807|gb|KGN48011.1| (hypothetical protein Csa_6G424020 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 75/101 (74.26%), Postives = 75/101 (74.26%), Query Frame = -2 

Query: 593 MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAXXXXXXXXXXXXXXYLSC 652
           MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPA              YLSC
Sbjct: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60

Query: 653 FXXXXXXXXXXXXMVRCAVCLASKILLWIVFSFPHPDPNHI 712
           F            MVRCAVCLASKILLWIVFSFPHPDPNHI
Sbjct: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 101

Query: 713  772
           
Sbjct: 121  101

Query: 773  832
           
Sbjct: 181  101

Query: 833  892
           
Sbjct: 241  101

Query: 893  896
           
Sbjct: 301  101

[Close]
BLAST of CU104002 vs. NCBI nr
Match: gi|778716642|ref|XP_011657573.1| (PREDICTED: protein TIME FOR COFFEE isoform X3 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 72/83 (86.75%), Postives = 72/83 (86.75%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            CHPVTLGGSSTTDP           NNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA
Sbjct: 1498 CHPVTLGGSSTTDPAKAVAAAAAAANNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 1557

Query: 87   GFPYVHTAAVQVKSTEQKQPAGG 146
            GFPYVHTAAVQVKSTEQKQPAGG
Sbjct: 1558 GFPYVHTAAVQVKSTEQKQPAGG 1580

Query: 147   206
            
Sbjct: 1618  1580

Query: 207   266
            
Sbjct: 1678  1580

Query: 267   276
            
Sbjct: 1738  1580

[Close]
BLAST of CU104002 vs. NCBI nr
Match: gi|778716646|ref|XP_011657574.1| (PREDICTED: protein TIME FOR COFFEE isoform X4 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 72/83 (86.75%), Postives = 72/83 (86.75%), Query Frame = 3 

Query: 27   CHPVTLGGSSTTDPXXXXXXXXXXXNNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 86
            CHPVTLGGSSTTDP           NNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA
Sbjct: 1497 CHPVTLGGSSTTDPAKAVAAAAAAANNMKGGGGLPTQAILHPAQFAAAQSSGNPHQLVPA 1556

Query: 87   GFPYVHTAAVQVKSTEQKQPAGG 146
            GFPYVHTAAVQVKSTEQKQPAGG
Sbjct: 1557 GFPYVHTAAVQVKSTEQKQPAGG 1579

Query: 147   206
            
Sbjct: 1617  1579

Query: 207   266
            
Sbjct: 1677  1579

Query: 267   276
            
Sbjct: 1737  1579

The following BLAST results are available for this feature:
BLAST of CU104002 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJV3_CUCSA2.9e-3374.26Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424020 PE=4 SV=1[more]
A0A0A0KI38_CUCSA8.4e-3385.88Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424520 PE=4 SV=1[more]
A0A0A0KI38_CUCSA4.2e-1697.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424520 PE=4 SV=1[more]
A0A059B3J1_EUCGR1.9e-1659.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03537 PE=4 SV=1[more]
B9HJW4_POPTR7.2e-1661.90Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15060g PE=4 SV=2[more]
BLAST of CU104002 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192808|gb|KGN48012.1|1.2e-3285.88hypothetical protein Csa_6G424520 [Cucumis sativus][more]
gi|778716638|ref|XP_011657572.1|1.6e-3286.75PREDICTED: protein TIME FOR COFFEE isoform X2 [Cucumis sativus][more]
gi|700192807|gb|KGN48011.1|1.6e-3274.26hypothetical protein Csa_6G424020 [Cucumis sativus][more]
gi|778716642|ref|XP_011657573.1|1.6e-3286.75PREDICTED: protein TIME FOR COFFEE isoform X3 [Cucumis sativus][more]
gi|778716646|ref|XP_011657574.1|1.6e-3286.75PREDICTED: protein TIME FOR COFFEE isoform X4 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G424520Csa6G424520gene
Csa6G424020Csa6G424020gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
Cuc3_2_A06Cuc3_2_A06EST
ES882466ES882466EST
ES882712ES882712EST
FKNP3UI02NBMLJFKNP3UI02NBMLJEST
FKNP3UI02OJH16FKNP3UI02OJH16EST
G0066411G0066411EST
G0071944G0071944EST
G0119515G0119515EST
G0146301G0146301EST
G0150412G0150412EST
H0047332H0047332EST
H0154165H0154165EST
H0158206H0158206EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34798FAMILY NOT NAMEDcoord: 24..92
score: 2.2
NoneNo IPR availablePANTHERPTHR34798:SF2PROTEIN TIME FOR COFFEEcoord: 24..92
score: 2.2