Csa6G424020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G424020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 19768927 .. 19769232 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAAGAGAGATGATGATACTGTTTCTAAAGGGAGCTTAAAGAGAGAAATAAACCTCAAAAAGGGAATGAAATCAAATATTTTAAGGAAGAAAAAGAACCTCCACCATTACAACCCACCAGCCAAAGGTAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAAGGATATCTTTCTTGCTTTTCCTCTCTCCTTCATTCCATTGTCATCATCATTCATATGGTTCGCTGTGCCGTGTGTCTTGCTTCAAAGATTCTTCTTTGGATTGTCTTTTCCTTTCCCCATCCAGACCCAAACCATATTTAA

mRNA sequence

ATGTTAAAGAGAGATGATGATACTGTTTCTAAAGGGAGCTTAAAGAGAGAAATAAACCTCAAAAAGGGAATGAAATCAAATATTTTAAGGAAGAAAAAGAACCTCCACCATTACAACCCACCAGCCAAAGGTAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAAGGATATCTTTCTTGCTTTTCCTCTCTCCTTCATTCCATTGTCATCATCATTCATATGGTTCGCTGTGCCGTGTGTCTTGCTTCAAAGATTCTTCTTTGGATTGTCTTTTCCTTTCCCCATCCAGACCCAAACCATATTTAA

Coding sequence (CDS)

ATGTTAAAGAGAGATGATGATACTGTTTCTAAAGGGAGCTTAAAGAGAGAAATAAACCTCAAAAAGGGAATGAAATCAAATATTTTAAGGAAGAAAAAGAACCTCCACCATTACAACCCACCAGCCAAAGGTAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAAGGATATCTTTCTTGCTTTTCCTCTCTCCTTCATTCCATTGTCATCATCATTCATATGGTTCGCTGTGCCGTGTGTCTTGCTTCAAAGATTCTTCTTTGGATTGTCTTTTCCTTTCCCCATCCAGACCCAAACCATATTTAA

Protein sequence

MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSCFSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI*
Homology
[Close]
BLAST of Csa6G424020 vs. TrEMBL
Match: A0A0A0KJV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424020 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.4e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60
           MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC
Sbjct: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60

Query: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 102
           FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI
Sbjct: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 101

[Close]
BLAST of Csa6G424020 vs. NCBI nr
Match: gi|700192807|gb|KGN48011.1| (hypothetical protein Csa_6G424020 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60
           MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC
Sbjct: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60

Query: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 102
           FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI
Sbjct: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 101

The following BLAST results are available for this feature:
BLAST of Csa6G424020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJV3_CUCSA8.4e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G424020 PE=4 SV=1[more]
BLAST of Csa6G424020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192807|gb|KGN48011.1|1.2e-51100.00hypothetical protein Csa_6G424020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088753cucumber EST collection version 3.0transcribed_cluster
CU104002cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G424020.1Csa6G424020.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088753CU088753transcribed_cluster
CU104002CU104002transcribed_cluster