CU103696 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU103696
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 14757800 .. 14758139 (-)
Sequence length	377

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGAGAACCCAACAACAGATAAACAAAACCCCGAGTTGTAAATAAACTTAAACCAGTAATGAACAATACAATTTTCAACAAACACTTTAAAAGAGAGATATCATCATCATCATCATCATCATCATCAAGCTAAGAAAACAATGTCCGTTATGCTTACTCTCATCAACAAAAGAATAGAAAAGATAAAAGAAAAAACTAAGTTTAATCCCTTCTTGTTCCTCTGTTTTAACCAGCAAAGGAATCCTCCTTGTGAGTCTCAATTACAAGATCAGACTCAGGCCTAGCAACACAAGTTAAAACCCAACCTTCAGCCACTTGCTCATCATTCAAGAAAACTCTGATCAGAATTAGAATACCCCCGGACCGTAAATAGGACCA

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU103696 vs. Swiss-Prot
Match: FER_LEULE (Ferredoxin OS=Leucaena leucocephala PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+DEQ+ EGWVLTC A P SD+VIETHKE+   G
Sbjct: 62  FLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96

Query: 288  333
           
Sbjct: 122  96

[Close]

BLAST of CU103696 vs. Swiss-Prot
Match: FER2_MAIZE (Ferredoxin-2, chloroplastic OS=Zea mays GN=FDX2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = -1


Query: 240 FLNDEQVAEGWVLTCVARPESDLVIETHKED 299
           FLND QVA+GWVLTC A P SD+VIETHKED
Sbjct: 107 FLNDNQVADGWVLTCAAYPTSDVVIETHKED 137

Query: 300  333
           
Sbjct: 167  137

[Close]

BLAST of CU103696 vs. Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-07
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = -1


Query: 240 FLNDEQVAEGWVLTCVARPESDLVIETHKED 299
           FL+D QVA+GWVLTCVA P SD+VIETHKED
Sbjct: 101 FLDDSQVADGWVLTCVAYPTSDVVIETHKED 131

Query: 300  333
           
Sbjct: 161  131

[Close]

BLAST of CU103696 vs. Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhizos PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-07
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = -1


Query: 240 FLNDEQVAEGWVLTCVARPESDLVIETHKED 299
           FL+D+Q+ EGWVLTCVA P SD+VIETHKE+
Sbjct: 64  FLDDDQIGEGWVLTCVAYPTSDVVIETHKEE 94

Query: 300  333
           
Sbjct: 124  94

[Close]

BLAST of CU103696 vs. Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-07
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = -1


Query: 240 FLNDEQVAEGWVLTCVARPESDLVIETHKED 299
           FL+DEQ+ EGWVLTCVA P+SD+ IETHKE+
Sbjct: 63  FLDDEQIEEGWVLTCVAYPKSDVTIETHKEE 93

Query: 300  333
           
Sbjct: 123  93

[Close]

BLAST of CU103696 vs. TrEMBL
Match: A0A0A0L764_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+DEQVAEGWVLTCVARPESDLVIETHKEDSFAG
Sbjct: 112 FLDDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 146

Query: 288  333
           
Sbjct: 172  146

[Close]

BLAST of CU103696 vs. TrEMBL
Match: A9PJ54_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+D+Q+ EGWVLTCVA P SD+VIETHKE+ F+G
Sbjct: 113 FLDDDQIEEGWVLTCVAYPTSDVVIETHKEEEFSG 147

Query: 288  333
           
Sbjct: 173  147

[Close]

BLAST of CU103696 vs. TrEMBL
Match: A9PH06_POPTR (Ferredoxin 2 family protein OS=Populus trichocarpa GN=POPTR_0004s22810g PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+D+Q+ EGWVLTCVA P SD+VIETHKE+ F+G
Sbjct: 113 FLDDDQIEEGWVLTCVAYPTSDVVIETHKEEEFSG 147

Query: 288  333
           
Sbjct: 173  147

[Close]

BLAST of CU103696 vs. TrEMBL
Match: A0A068TNJ2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014959001 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+D+Q+ EGWVLTCVARP S+LVIETHKE+   G
Sbjct: 113 FLDDDQMDEGWVLTCVARPTSELVIETHKEEDLVG 147

Query: 288  333
           
Sbjct: 173  147

[Close]

BLAST of CU103696 vs. TrEMBL
Match: A9PEJ0_POPTR (Ferredoxin I family protein OS=Populus trichocarpa GN=POPTR_0003s01090g PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-06
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = -1


Query: 231 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFA 290
           FL+++Q+AEGWVLTCVA P SD+VIETHKE+ F+
Sbjct: 114 FLDEDQIAEGWVLTCVAYPTSDVVIETHKEEEFS 147

Query: 291  333
           
Sbjct: 174  147

[Close]

BLAST of CU103696 vs. NCBI nr
Match: gi|449457045|ref|XP_004146259.1| (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+DEQVAEGWVLTCVARPESDLVIETHKEDSFAG
Sbjct: 112 FLDDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 146

Query: 288  333
           
Sbjct: 172  146

[Close]

BLAST of CU103696 vs. NCBI nr
Match: gi|985815222|ref|WP_060875669.1| (ferredoxin [Myroides odoratus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+DEQ+AEGWVLTCVARPESDLVIETHKE+ FAG
Sbjct: 63  FLDDEQMAEGWVLTCVARPESDLVIETHKEEVFAG 97

Query: 288  333
           
Sbjct: 123  97

[Close]

BLAST of CU103696 vs. NCBI nr
Match: gi|659112074|ref|XP_008456052.1| (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 7.0e-09
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+D+QVAEGWVLTCVAR ESD+VIETHKED FAG
Sbjct: 112 FLDDDQVAEGWVLTCVARAESDVVIETHKEDVFAG 146

Query: 288  333
           
Sbjct: 172  146

[Close]

BLAST of CU103696 vs. NCBI nr
Match: gi|743848648|ref|XP_011028285.1| (PREDICTED: ferredoxin-like [Populus euphratica])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+D+Q+ EGWVLTCVA P SD+VIETHKE+ F+G
Sbjct: 113 FLDDDQIEEGWVLTCVAYPTSDVVIETHKEEEFSG 147

Query: 288  333
           
Sbjct: 173  147

[Close]

BLAST of CU103696 vs. NCBI nr
Match: gi|566168117|ref|XP_006384985.1| (Ferredoxin 2 family protein [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 228 FLNDEQVAEGWVLTCVARPESDLVIETHKEDSFAG 287
           FL+D+Q+ EGWVLTCVA P SD+VIETHKE+ F+G
Sbjct: 113 FLDDDQIEEGWVLTCVAYPTSDVVIETHKEEEFSG 147

Query: 288  333
           
Sbjct: 173  147

The following BLAST results are available for this feature:

BLAST of CU103696 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER_LEULE	1.3e-07	68.57	Ferredoxin OS=Leucaena leucocephala PE=1 SV=1	[more]
FER2_MAIZE	1.3e-07	80.65	Ferredoxin-2, chloroplastic OS=Zea mays GN=FDX2 PE=1 SV=1	[more]
FER5_MAIZE	1.7e-07	80.65	Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1	[more]
FERB_ALOMA	5.0e-07	74.19	Ferredoxin-B OS=Alocasia macrorrhizos PE=1 SV=1	[more]
FER_SAMNI	5.0e-07	74.19	Ferredoxin OS=Sambucus nigra PE=1 SV=1	[more]

BLAST of CU103696 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L764_CUCSA	1.5e-10	97.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1	[more]
A9PJ54_9ROSI	2.3e-06	71.43	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
A9PH06_POPTR	2.3e-06	71.43	Ferredoxin 2 family protein OS=Populus trichocarpa GN=POPTR_0004s22810g PE=2 SV=...	[more]
A0A068TNJ2_COFCA	6.6e-06	71.43	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014959001 PE=4 SV=1	[more]
A9PEJ0_POPTR	8.6e-06	70.59	Ferredoxin I family protein OS=Populus trichocarpa GN=POPTR_0003s01090g PE=2 SV=...	[more]

BLAST of CU103696 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457045\|ref\|XP_004146259.1\|	3.3e-11	97.14	PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus]	[more]
gi\|985815222\|ref\|WP_060875669.1\|	1.1e-09	88.57	ferredoxin [Myroides odoratus]	[more]
gi\|659112074\|ref\|XP_008456052.1\|	7.0e-09	85.71	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
gi\|743848648\|ref\|XP_011028285.1\|	5.0e-07	71.43	PREDICTED: ferredoxin-like [Populus euphratica]	[more]
gi\|566168117\|ref\|XP_006384985.1\|	5.0e-07	71.43	Ferredoxin 2 family protein [Populus trichocarpa]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G222800	Csa3G222800	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02M5WAJ	FKNP3UI02M5WAJ	EST
FKNP3UI02OOFBJ	FKNP3UI02OOFBJ	EST
G0025528	G0025528	EST
G0089845	G0089845	EST
H0152443	H0152443	EST