CU102596 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU102596
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Delta(24)-sterol reductase
Location	Chr4 : 6701910 .. 6703921 (+)
Sequence length	364

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAAAACAGTTAACAGCTAGCCACTTGGCTTCCCTACTCTCTCCTTACTCCTTCATATTCTTCTCTTCACGTTTTCATTTTCTCCAACTTCTTTTATCCTCTCTCAACATTTTTTCTCATCTGCTTCATTTCTTTCTTCCTCAGTTCTCTTCTGCTTCATTTCTTTCTTGATAAGCATCTTGATTCCCCATAATGACAGACCTTGAGGCCTCCAAGCCACAAAAGAGGAAGAAAGGCTGGGTGGACATCTTGGTTAATTTTCGCTGGATTATAGTTATTTTTGTAGTTCTCCCGTTCTCATTCAGTTTCTACTTCATCCAATATCTTGGAGACAAACGATCAGAGAGGAAGTCGTACAAGCAGCG

Library


Library category	ESTs
fruit (8DPP) library	6
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU102596 vs. Swiss-Prot
Match: DIM_PEA (Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-14
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3


Query: 192 MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYK 251
           M+DLEA    KRKK WVD  V FRWI+VIFVVLP SF+ YF+ YLGD RSE KS+K
Sbjct: 1   MSDLEAPLRPKRKKIWVDYFVKFRWILVIFVVLPISFTLYFLTYLGDVRSEWKSFK 56

Query: 252  311
           
Sbjct: 61   56

Query: 312  360
           
Sbjct: 121  56

[Close]

BLAST of CU102596 vs. Swiss-Prot
Match: DIM_ARATH (Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 3


Query: 192 MTDLEASKPQ-KRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 251
           M+DL+    + KRKK WVD  V FRWIIVIF+VLPFS +FYF+ YLGD  SE KS+++
Sbjct: 1   MSDLQTPLVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEK 58

Query: 252  311
           
Sbjct: 61   58

Query: 312  363
           
Sbjct: 121  58

[Close]

BLAST of CU102596 vs. TrEMBL
Match: A0A0A0KZ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G103350 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3


Query: 192 MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 251
           MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ
Sbjct: 1   MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 57

Query: 252  311
           
Sbjct: 61   57

Query: 312  363
           
Sbjct: 121  57

[Close]

BLAST of CU102596 vs. TrEMBL
Match: F6HGH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-15
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 3


Query: 183 FPIMTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 242
           FPIM+DL+A    KRKK WVD  V+FRWIIVIFVVLP SF+ YF+ YLGD RSE KS+KQ
Sbjct: 51  FPIMSDLQAPLRPKRKKIWVDYFVHFRWIIVIFVVLPISFTLYFLTYLGDVRSESKSFKQ 110

Query: 243  302
           
Sbjct: 111  110

Query: 303  362
           
Sbjct: 171  110

[Close]

BLAST of CU102596 vs. TrEMBL
Match: A0A068VAI8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005100001 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 3


Query: 183 FPIMTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 242
           F  M+DLEAS   KRKKG VD  V FRWIIVIFVVLP SF+ YF+ YLGD RSE KS+KQ
Sbjct: 35  FTNMSDLEASLRPKRKKGLVDYFVQFRWIIVIFVVLPISFTMYFLHYLGDVRSECKSFKQ 94

Query: 243  302
           
Sbjct: 95   94

Query: 303  362
           
Sbjct: 155  94

[Close]

BLAST of CU102596 vs. TrEMBL
Match: S8CYE4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_04718 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 3


Query: 192 MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 251
           M DLEA    KRKK WVD  V FRWIIVIFVVLP SFS YF+ YLGD RSE KS+KQ
Sbjct: 1   MADLEAPLRPKRKKIWVDYFVQFRWIIVIFVVLPISFSLYFLTYLGDVRSESKSFKQ 57

Query: 252  311
           
Sbjct: 61   57

Query: 312  363
           
Sbjct: 121  57

[Close]

BLAST of CU102596 vs. TrEMBL
Match: W9SYN1_9ROSA (Delta(24)-sterol reductase OS=Morus notabilis GN=L484_014984 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 3


Query: 192 MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 251
           M+DLEA    KRKK WVD  V FRWI+VIFVVLP SF+ YF+ YLGD +SERKS+KQ
Sbjct: 1   MSDLEAPLRPKRKKIWVDYFVQFRWILVIFVVLPISFTLYFLTYLGDVKSERKSFKQ 57

Query: 252  311
           
Sbjct: 61   57

Query: 312  363
           
Sbjct: 121  57

[Close]

BLAST of CU102596 vs. NCBI nr
Match: gi|449438803|ref|XP_004137177.1| (PREDICTED: delta(24)-sterol reductase-like [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 5.6e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3


Query: 192 MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 251
           MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ
Sbjct: 1   MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 57

Query: 252  311
           
Sbjct: 61   57

Query: 312  363
           
Sbjct: 121  57

[Close]

BLAST of CU102596 vs. NCBI nr
Match: gi|659120557|ref|XP_008460246.1| (PREDICTED: delta(24)-sterol reductase-like [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 3


Query: 198 DLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 257
           DLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ
Sbjct: 2   DLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 56

Query: 258  317
           
Sbjct: 62   56

Query: 318  363
           
Sbjct: 122  56

[Close]

BLAST of CU102596 vs. NCBI nr
Match: gi|297738246|emb|CBI27447.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 3


Query: 183 FPIMTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 242
           FPIM+DL+A    KRKK WVD  V+FRWIIVIFVVLP SF+ YF+ YLGD RSE KS+KQ
Sbjct: 51  FPIMSDLQAPLRPKRKKIWVDYFVHFRWIIVIFVVLPISFTLYFLTYLGDVRSESKSFKQ 110

Query: 243  302
           
Sbjct: 111  110

Query: 303  362
           
Sbjct: 171  110

[Close]

BLAST of CU102596 vs. NCBI nr
Match: gi|743782362|ref|XP_011016908.1| (PREDICTED: delta(24)-sterol reductase-like [Populus euphratica])

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 3


Query: 192 MTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 251
           M+DLEA    KRKK WVD  V FRWI+VIFVVLP SFS YF+ YLGD +SE KSYKQ
Sbjct: 1   MSDLEAPLRPKRKKVWVDYFVQFRWILVIFVVLPISFSLYFLTYLGDVKSEMKSYKQ 57

Query: 252  311
           
Sbjct: 61   57

Query: 312  363
           
Sbjct: 121  57

[Close]

BLAST of CU102596 vs. NCBI nr
Match: gi|661878638|emb|CDP17594.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 3


Query: 183 FPIMTDLEASKPQKRKKGWVDILVNFRWIIVIFVVLPFSFSFYFIQYLGDKRSERKSYKQ 242
           F  M+DLEAS   KRKKG VD  V FRWIIVIFVVLP SF+ YF+ YLGD RSE KS+KQ
Sbjct: 35  FTNMSDLEASLRPKRKKGLVDYFVQFRWIIVIFVVLPISFTMYFLHYLGDVRSECKSFKQ 94

Query: 243  302
           
Sbjct: 95   94

Query: 303  362
           
Sbjct: 155  94

The following BLAST results are available for this feature:

BLAST of CU102596 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIM_PEA	3.1e-14	67.86	Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1	[more]
DIM_ARATH	6.5e-12	60.34	Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2	[more]

BLAST of CU102596 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ82_CUCSA	2.3e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G103350 PE=4 SV=1	[more]
F6HGH6_VITVI	5.7e-15	70.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01200 PE=4 SV=...	[more]
A0A068VAI8_COFCA	1.4e-13	70.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005100001 PE=4 SV=1	[more]
S8CYE4_9LAMI	1.8e-13	71.93	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_04718 PE=4 SV=1	[more]
W9SYN1_9ROSA	2.4e-13	68.42	Delta(24)-sterol reductase OS=Morus notabilis GN=L484_014984 PE=4 SV=1	[more]

BLAST of CU102596 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438803\|ref\|XP_004137177.1\|	5.6e-24	100.00	PREDICTED: delta(24)-sterol reductase-like [Cucumis sativus]	[more]
gi\|659120557\|ref\|XP_008460246.1\|	1.1e-22	100.00	PREDICTED: delta(24)-sterol reductase-like [Cucumis melo]	[more]
gi\|297738246\|emb\|CBI27447.3\|	1.4e-14	70.00	unnamed protein product [Vitis vinifera]	[more]
gi\|743782362\|ref\|XP_011016908.1\|	3.4e-13	70.18	PREDICTED: delta(24)-sterol reductase-like [Populus euphratica]	[more]
gi\|661878638\|emb\|CDP17594.1\|	3.4e-13	70.00	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G103350	Csa4G103350	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K06T9	FKNP3UI02K06T9	EST
FKNP3UI02K2457	FKNP3UI02K2457	EST
FKNP3UI02K5PTC	FKNP3UI02K5PTC	EST
FKNP3UI02LFFZR	FKNP3UI02LFFZR	EST
FKNP3UI02MUUBU	FKNP3UI02MUUBU	EST
FKNP3UI02OOAYC	FKNP3UI02OOAYC	EST
H0093531	H0093531	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10801	24-DEHYDROCHOLESTEROL REDUCTASE	coord: 11..58 score: 2.2
None	No IPR available	PANTHER	PTHR10801:SF0	DELTA(24)-STEROL REDUCTASE	coord: 11..58 score: 2.2