CU102412 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU102412
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Charged multivesicular body protein 3
Location	Chr1 : 8828812 .. 8832034 (-)
Sequence length	650

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGCAATTCTTTGATCTTCAAAATTTTTGGTAGTCAAAAGGAGAGAGATGGAAAAAGTGATGAACATCTTGAAGCCCAAACCAAATCCTCAACAACAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGCAACGTCGAACGCCAAATTCGAGATATACAGCGAGAAGAGAAAAATGTGCAGAAAGCCATTAGGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGCACTGGCTAAAGAAATTGTGAGGTCTAAAAAAACTGTGAACCGCCTTCATGAAAACAAGGCACAGCTTAATTCGATATCCATGCACCTTGGCGAAAGTGTTGCCATTGCGAGAACGGTGGGACATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAAAAACAATGCAAGAGTTTAGCAAGGAGATGACCAAGGCTGGGGTGATCGAGGAATTTGTAAATGATGCGGTGGATTCAGCACTAGATTCTGAGGATATTGAAGAGGAGATTGAAGAGGAAGTTGACAAAGTTTTGACTGCCATTGCCGGTGAGACTGCGGCACAGCTTCCAGAAGCTGTCAGGAAAAGGAAAAAGATAGAAAACGAACCGGCTCATGTGCAGGAAG

Library


Library category	ESTs
fruit (8DPP) library	9
gynoecious flower library	3
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU102412 vs. Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=1 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.8e-74
Identity = 145/190 (76.32%), Postives = 161/190 (84.74%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           ME+VMNI+KPKP+P             ECRN+ERQIRDIQ+EE+NVQKAI++AAKRNDMV
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKEIV S++TVNRL+ENKAQ+NSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAP+MA TMQEFSKEMTKAGVIEEFVN+A+D+ALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRK 286
           +LP AVRK +
Sbjct: 181 ELPVAVRKER 190

Query: 287  346
           
Sbjct: 241  190

Query: 347  406
           
Sbjct: 301  190

Query: 407  466
           
Sbjct: 361  190

Query: 467  526
           
Sbjct: 421  190

Query: 527  586
           
Sbjct: 481  190

Query: 587  617
           
Sbjct: 541  190

[Close]

BLAST of CU102412 vs. Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.0e-56
Identity = 118/170 (69.41%), Postives = 138/170 (81.18%), Query Frame = 2


Query: 140 VERQIRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLNSISM 199
           ++  + DI+REE+NV KAI+D+ KRND+V+AKALA+EIV S++TV RL+ENKAQ+NSISM
Sbjct: 3   IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISM 62

Query: 200 HLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAKTMQEFSKEMTKAGVIEEFVNDAVD 259
           HLGES+A A TVG+LSKS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD
Sbjct: 63  HLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVD 122

Query: 260 SALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKRKKIENEPAHVQE 319
           +ALDS          VDKVLTAIAGETAA+LPEAVRK+K   N PA   E
Sbjct: 123 NALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKM--NVPAQKAE 170

Query: 320  379
           
Sbjct: 183  170

Query: 380  439
           
Sbjct: 243  170

Query: 440  499
           
Sbjct: 303  170

Query: 500  559
           
Sbjct: 363  170

Query: 560  619
           
Sbjct: 423  170

Query: 620  650
           
Sbjct: 483  170

[Close]

BLAST of CU102412 vs. Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1 SV=3)

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-30
Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 2


Query: 128 ECRNVERQIRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLN 187
           E R V+RQIRDIQREE+ V+++++DAAK+        LAKE++RS+K V++L+ +KA +N
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 188 SISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAKTMQEFSKEMTKAGVIEEFVN 247
           S+ M +   +A+ R  G L KS EVMK + +L+K PE+  TM+E SKEM KAG+IEE + 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 248 DAVDSALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKRKKIENEPA 307
           D  +S  D           +D++L  I      + P  V      E EPA
Sbjct: 146 DTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALP-EPEPA 194

Query: 308  367
           
Sbjct: 206  194

Query: 368  427
           
Sbjct: 266  194

Query: 428  487
           
Sbjct: 326  194

Query: 488  547
           
Sbjct: 386  194

Query: 548  607
           
Sbjct: 446  194

Query: 608  638
           
Sbjct: 506  194

[Close]

BLAST of CU102412 vs. Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3 PE=1 SV=3)

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-30
Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 2


Query: 128 ECRNVERQIRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLN 187
           E R V+RQIRDIQREE+ V+++++DAAK+        LAKE++RS+K V++L+ +KA +N
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 188 SISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAKTMQEFSKEMTKAGVIEEFVN 247
           S+ M +   +A+ R  G L KS EVMK + +L+K PE+  TM+E SKEM KAG+IEE + 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 248 DAVDSALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKRKKIENEPA 307
           D  +S  D           +D++L  I      + P  V      E EPA
Sbjct: 146 DTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALP-EPEPA 194

Query: 308  367
           
Sbjct: 206  194

Query: 368  427
           
Sbjct: 266  194

Query: 428  487
           
Sbjct: 326  194

Query: 488  547
           
Sbjct: 386  194

Query: 548  607
           
Sbjct: 446  194

Query: 608  638
           
Sbjct: 506  194

[Close]

BLAST of CU102412 vs. Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3 PE=2 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 9.5e-30
Identity = 65/159 (40.88%), Postives = 98/159 (61.64%), Query Frame = 2


Query: 128 ECRNVERQIRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLN 187
           E R ++RQIRDIQRE++ V+++I+++AK+ +  +   LAKE+V+SKK VN+L+ +KA +N
Sbjct: 26  EMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMN 85

Query: 188 SISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAKTMQEFSKEMTKAGVIEEFVN 247
           S+ M +   +A+ R  G L KS EVMK + NL+K PE+  TM+E SKEM KAG+IEE + 
Sbjct: 86  SVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 248 DAVDSALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 307
           D  +   D           +D++L  +      + P  V
Sbjct: 146 DTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKV 184

Query: 308  367
           
Sbjct: 206  184

Query: 368  427
           
Sbjct: 266  184

Query: 428  487
           
Sbjct: 326  184

Query: 488  547
           
Sbjct: 386  184

Query: 548  605
           
Sbjct: 446  184

[Close]

BLAST of CU102412 vs. TrEMBL
Match: A0A0A0LXU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109340 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.0e-83
Identity = 172/201 (85.57%), Postives = 173/201 (86.07%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWQRRLRQECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSEDIEEEIEEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRKKIENEPAHVQE 286
           QLPEAVRK K    +PAHVQE
Sbjct: 181 QLPEAVRKEKM--KQPAHVQE 199

Query: 287  346
           
Sbjct: 241  199

Query: 347  406
           
Sbjct: 301  199

Query: 407  466
           
Sbjct: 361  199

Query: 467  526
           
Sbjct: 421  199

Query: 527  586
           
Sbjct: 481  199

Query: 587  646
           
Sbjct: 541  199

Query: 647  650
           
Sbjct: 601  199

[Close]

BLAST of CU102412 vs. TrEMBL
Match: W9S8I5_9ROSA (Vacuolar protein sorting-associated protein 24-1-like protein OS=Morus notabilis GN=L484_017636 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.1e-76
Identity = 156/205 (76.10%), Postives = 171/205 (83.41%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDI++EEKNVQKAIR+AAKRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWQRKLRQECRNIERQIRDIEKEEKNVQKAIREAAKRNDMV 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKE+VRSKKTVNRLHENKAQ+NSISMHLGESVAIARTVGHLSKS+EVMKLVNNLM
Sbjct: 61  SAKALAKELVRSKKTVNRLHENKAQMNSISMHLGESVAIARTVGHLSKSSEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPE+A TMQEFSKEMTKAGVIEE VNDAVD+ALDS          VDKVLTAIAGET+A
Sbjct: 121 KAPEVAATMQEFSKEMTKAGVIEEMVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETSA 180

Query: 227 QLPEAVRKRK----KIENEPAHVQE 286
           QLPEAVRK K     + ++ +H +E
Sbjct: 181 QLPEAVRKEKLKQPAVASQASHEEE 205

Query: 287  346
           
Sbjct: 241  205

Query: 347  406
           
Sbjct: 301  205

Query: 407  466
           
Sbjct: 361  205

Query: 467  526
           
Sbjct: 421  205

Query: 527  586
           
Sbjct: 481  205

Query: 587  646
           
Sbjct: 541  205

Query: 647  650
           
Sbjct: 601  205

[Close]

BLAST of CU102412 vs. TrEMBL
Match: K4D9N4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.0e-76
Identity = 159/201 (79.10%), Postives = 166/201 (82.59%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDIQREEKNVQKAI++AAKRNDM 
Sbjct: 1   MEKVMNILKPKPNPQQILRDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMG 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKEIVRSKKTVNRL+ENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVRSKKTVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPE+A TMQEFSKEMTKAGV+EE VNDAVDSALDS          VDKVLTAIAGET A
Sbjct: 121 KAPEVAMTMQEFSKEMTKAGVMEEMVNDAVDSALDSEDMEEEIEEEVDKVLTAIAGETTA 180

Query: 227 QLPEAVRKRKKIENEPAHVQE 286
           QLPEAVRK K    +PA   E
Sbjct: 181 QLPEAVRKEKL--KQPAQAVE 199

Query: 287  346
           
Sbjct: 241  199

Query: 347  406
           
Sbjct: 301  199

Query: 407  466
           
Sbjct: 361  199

Query: 467  526
           
Sbjct: 421  199

Query: 527  586
           
Sbjct: 481  199

Query: 587  646
           
Sbjct: 541  199

Query: 647  650
           
Sbjct: 601  199

[Close]

BLAST of CU102412 vs. TrEMBL
Match: M0ZI26_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000449 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.0e-76
Identity = 159/201 (79.10%), Postives = 166/201 (82.59%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDIQREEKNVQKAI++AAKRNDM 
Sbjct: 1   MEKVMNILKPKPNPQQILRDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMG 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKEIVRSKKTVNRL+ENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVRSKKTVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPE+A TMQEFSKEMTKAGV+EE VNDAVDSALDS          VDKVLTAIAGET A
Sbjct: 121 KAPEVAMTMQEFSKEMTKAGVMEEMVNDAVDSALDSEDMEEEIEEEVDKVLTAIAGETTA 180

Query: 227 QLPEAVRKRKKIENEPAHVQE 286
           QLPEAVRK K    +PA   E
Sbjct: 181 QLPEAVRKEKL--KQPAQAVE 199

Query: 287  346
           
Sbjct: 241  199

Query: 347  406
           
Sbjct: 301  199

Query: 407  466
           
Sbjct: 361  199

Query: 467  526
           
Sbjct: 421  199

Query: 527  586
           
Sbjct: 481  199

Query: 587  646
           
Sbjct: 541  199

Query: 647  650
           
Sbjct: 601  199

[Close]

BLAST of CU102412 vs. TrEMBL
Match: V7AFF3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G085100g PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 155/190 (81.58%), Postives = 163/190 (85.79%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDIQREEKNVQKAIR+AAKRNDM 
Sbjct: 1   MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIREAAKRNDMG 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKE+VRS+KTVNRL+ENKAQ+NSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPEMA TMQEFSKEMTKAGVIEE VNDAVDSALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPEMAVTMQEFSKEMTKAGVIEEMVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRK 286
           QLPEAVR+ +
Sbjct: 181 QLPEAVRRER 190

Query: 287  346
           
Sbjct: 241  190

Query: 347  406
           
Sbjct: 301  190

Query: 407  466
           
Sbjct: 361  190

Query: 467  526
           
Sbjct: 421  190

Query: 527  586
           
Sbjct: 481  190

Query: 587  617
           
Sbjct: 541  190

[Close]

BLAST of CU102412 vs. NCBI nr
Match: gi|449459120|ref|XP_004147294.1| (PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 6.5e-79
Identity = 172/201 (85.57%), Postives = 173/201 (86.07%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWQRRLRQECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSEDIEEEIEEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRKKIENEPAHVQE 286
           QLPEAVRK K    +PAHVQE
Sbjct: 181 QLPEAVRKEKM--KQPAHVQE 199

Query: 287  346
           
Sbjct: 241  199

Query: 347  406
           
Sbjct: 301  199

Query: 407  466
           
Sbjct: 361  199

Query: 467  526
           
Sbjct: 421  199

Query: 527  586
           
Sbjct: 481  199

Query: 587  646
           
Sbjct: 541  199

Query: 647  650
           
Sbjct: 601  199

[Close]

BLAST of CU102412 vs. NCBI nr
Match: gi|659072004|ref|XP_008463000.1| (PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 5.5e-78
Identity = 170/201 (84.58%), Postives = 172/201 (85.57%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEK+MNILKPKPNP             ECRNVERQIRDIQREEKNV KAIRDAAKRNDMV
Sbjct: 1   MEKMMNILKPKPNPQQQLRDWQRRLRQECRNVERQIRDIQREEKNVHKAIRDAAKRNDMV 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSEDIEEEIEEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRKKIENEPAHVQE 286
           QLPEAVRK K    +PAHVQE
Sbjct: 181 QLPEAVRKEKM--KQPAHVQE 199

Query: 287  346
           
Sbjct: 241  199

Query: 347  406
           
Sbjct: 301  199

Query: 407  466
           
Sbjct: 361  199

Query: 467  526
           
Sbjct: 421  199

Query: 527  586
           
Sbjct: 481  199

Query: 587  646
           
Sbjct: 541  199

Query: 647  650
           
Sbjct: 601  199

[Close]

BLAST of CU102412 vs. NCBI nr
Match: gi|1012029926|ref|XP_015951782.1| (PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Arachis duranensis])

HSP 1 Score: 280.8 bits (717), Expect = 2.0e-72
Identity = 157/190 (82.63%), Postives = 164/190 (86.32%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDIQREEKNVQKAI++AAKRNDM 
Sbjct: 1   MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMG 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKE+VRSKKTVNRL+ENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKELVRSKKTVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPEMA TMQEFSKEMTKAGVIEE VNDAVDSALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRK 286
           +LPEAVRK+K
Sbjct: 181 ELPEAVRKQK 190

Query: 287  346
           
Sbjct: 241  190

Query: 347  406
           
Sbjct: 301  190

Query: 407  466
           
Sbjct: 361  190

Query: 467  526
           
Sbjct: 421  190

Query: 527  586
           
Sbjct: 481  190

Query: 587  617
           
Sbjct: 541  190

[Close]

BLAST of CU102412 vs. NCBI nr
Match: gi|703156989|ref|XP_010111610.1| (Vacuolar protein sorting-associated protein 24-1-like protein [Morus notabilis])

HSP 1 Score: 279.6 bits (714), Expect = 4.5e-72
Identity = 156/205 (76.10%), Postives = 171/205 (83.41%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDI++EEKNVQKAIR+AAKRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWQRKLRQECRNIERQIRDIEKEEKNVQKAIREAAKRNDMV 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKE+VRSKKTVNRLHENKAQ+NSISMHLGESVAIARTVGHLSKS+EVMKLVNNLM
Sbjct: 61  SAKALAKELVRSKKTVNRLHENKAQMNSISMHLGESVAIARTVGHLSKSSEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPE+A TMQEFSKEMTKAGVIEE VNDAVD+ALDS          VDKVLTAIAGET+A
Sbjct: 121 KAPEVAATMQEFSKEMTKAGVIEEMVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETSA 180

Query: 227 QLPEAVRKRK----KIENEPAHVQE 286
           QLPEAVRK K     + ++ +H +E
Sbjct: 181 QLPEAVRKEKLKQPAVASQASHEEE 205

Query: 287  346
           
Sbjct: 241  205

Query: 347  406
           
Sbjct: 301  205

Query: 407  466
           
Sbjct: 361  205

Query: 467  526
           
Sbjct: 421  205

Query: 527  586
           
Sbjct: 481  205

Query: 587  646
           
Sbjct: 541  205

Query: 647  650
           
Sbjct: 601  205

[Close]

BLAST of CU102412 vs. NCBI nr
Match: gi|593195127|ref|XP_007132323.1| (hypothetical protein PHAVU_011G085100g [Phaseolus vulgaris])

HSP 1 Score: 278.5 bits (711), Expect = 1.0e-71
Identity = 155/190 (81.58%), Postives = 163/190 (85.79%), Query Frame = 2


Query: 47  MEKVMNILKPKPNPXXXXXXXXXXXXXECRNVERQIRDIQREEKNVQKAIRDAAKRNDMV 106
           MEKVMNILKPKPNP             ECRN+ERQIRDIQREEKNVQKAIR+AAKRNDM 
Sbjct: 1   MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIREAAKRNDMG 60

Query: 107 SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 166
           SAKALAKE+VRS+KTVNRL+ENKAQ+NSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM
Sbjct: 61  SAKALAKELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 167 KAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSXXXXXXXXXXVDKVLTAIAGETAA 226
           KAPEMA TMQEFSKEMTKAGVIEE VNDAVDSALDS          VDKVLTAIAGETAA
Sbjct: 121 KAPEMAVTMQEFSKEMTKAGVIEEMVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAA 180

Query: 227 QLPEAVRKRK 286
           QLPEAVR+ +
Sbjct: 181 QLPEAVRRER 190

Query: 287  346
           
Sbjct: 241  190

Query: 347  406
           
Sbjct: 301  190

Query: 407  466
           
Sbjct: 361  190

Query: 467  526
           
Sbjct: 421  190

Query: 527  586
           
Sbjct: 481  190

Query: 587  617
           
Sbjct: 541  190

The following BLAST results are available for this feature:

BLAST of CU102412 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VP241_ARATH	2.8e-74	76.32	Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana...	[more]
VP242_ARATH	2.0e-56	69.41	Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis...	[more]
CHMP3_MOUSE	7.2e-30	41.76	Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1 SV=3	[more]
CHMP3_RAT	7.2e-30	41.76	Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3 PE=1 SV=3	[more]
CHMP3_XENLA	9.5e-30	40.88	Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3 PE=2 SV=3	[more]

BLAST of CU102412 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXU7_CUCSA	3.0e-83	85.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109340 PE=3 SV=1	[more]
W9S8I5_9ROSA	2.1e-76	76.10	Vacuolar protein sorting-associated protein 24-1-like protein OS=Morus notabilis...	[more]
K4D9N4_SOLLC	8.0e-76	79.10	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
M0ZI26_SOLTU	8.0e-76	79.10	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000449 PE=3 SV=1	[more]
V7AFF3_PHAVU	1.0e-75	81.58	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G085100g PE=3 SV=1	[more]

BLAST of CU102412 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459120\|ref\|XP_004147294.1\|	6.5e-79	85.57	PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis sat...	[more]
gi\|659072004\|ref\|XP_008463000.1\|	5.5e-78	84.58	PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis mel...	[more]
gi\|1012029926\|ref\|XP_015951782.1\|	2.0e-72	82.63	PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Arachis dur...	[more]
gi\|703156989\|ref\|XP_010111610.1\|	4.5e-72	76.10	Vacuolar protein sorting-associated protein 24-1-like protein [Morus notabilis]	[more]
gi\|593195127\|ref\|XP_007132323.1\|	1.0e-71	81.58	hypothetical protein PHAVU_011G085100g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005024	Snf7_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0007034	vacuolar transport

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G109340	Csa1G109340	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K10S4	FKNP3UI02K10S4	EST
FKNP3UI02LHDG0	FKNP3UI02LHDG0	EST
FKNP3UI02LX8BD	FKNP3UI02LX8BD	EST
FKNP3UI02NBD6E	FKNP3UI02NBD6E	EST
FKNP3UI02ND3IQ	FKNP3UI02ND3IQ	EST
FKNP3UI02NDLNC	FKNP3UI02NDLNC	EST
FKNP3UI02NU0EY	FKNP3UI02NU0EY	EST
FKNP3UI02OBJEB	FKNP3UI02OBJEB	EST
FKNP3UI02OTUMX	FKNP3UI02OTUMX	EST
G0088490	G0088490	EST
G0108845	G0108845	EST
G0134075	G0134075	EST
H0166480	H0166480	EST
H0175887	H0175887	EST
H0187074	H0187074	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 21..187 score: 9.2
None	No IPR available	unknown	Coil	Coil	coord: 22..56 scor
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 3..189 score: 5.9E
None	No IPR available	PANTHER	PTHR10476:SF10	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 24 HOMOLOG 2-RELATED	coord: 3..189 score: 5.9E