CU102059 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU102059
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Histone H2B
Location	Chr1 : 9434120 .. 9441712 (-)
Sequence length	425

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCTCCGGCCGCCTGGCGGCCGCGGGAATTCGATTAGCGTGGTCGCGGCCGAGGTACATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAGATTCATAGTATTTTAGGGTTTTCTCGTAGTAAAAAAGCAGGATCACTTGTTCTGGATCGTGTATTTCTTTTCCTTTTGTTGCTATTTTTGGAATTGAATGAATGAAAATCGGTTTTACATAACCCGAATTCTTTTTGAC

Library


Library category	ESTs
other	2
gynoecious flower library	4
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU102059 vs. Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-36
Identity = 78/81 (96.30%), Postives = 77/81 (95.06%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 68  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 127

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 128 GELAKHAVSEGTKAVTKFTSS 148

Query: 161  220
           
Sbjct: 188  148

Query: 221  280
           
Sbjct: 248  148

Query: 281  284
           
Sbjct: 308  148

[Close]

BLAST of CU102059 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 68  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 127

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 128 GELAKHAVSEGTKAVTKFTSS 148

Query: 161  220
           
Sbjct: 188  148

Query: 221  280
           
Sbjct: 248  148

Query: 281  284
           
Sbjct: 308  148

[Close]

BLAST of CU102059 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 70  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 129

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 130 GELAKHAVSEGTKAVTKFTSS 150

Query: 161  220
           
Sbjct: 190  150

Query: 221  280
           
Sbjct: 250  150

Query: 281  284
           
Sbjct: 310  150

[Close]

BLAST of CU102059 vs. Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 71  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 130

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 131 GELAKHAVSEGTKAVTKFTSS 151

Query: 161  220
           
Sbjct: 191  151

Query: 221  280
           
Sbjct: 251  151

Query: 281  284
           
Sbjct: 311  151

[Close]

BLAST of CU102059 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-35
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIG+SSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 58  VLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 117

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 118 GELAKHAVSEGTKAVTKFTSS 138

Query: 161  220
           
Sbjct: 178  138

Query: 221  280
           
Sbjct: 238  138

Query: 281  284
           
Sbjct: 298  138

[Close]

BLAST of CU102059 vs. TrEMBL
Match: A0A0A0KHC9_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 72  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 131

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 132 GELAKHAVSEGTKAVTKFTSS 152

Query: 161  220
           
Sbjct: 192  152

Query: 221  280
           
Sbjct: 252  152

Query: 281  284
           
Sbjct: 312  152

[Close]

BLAST of CU102059 vs. TrEMBL
Match: K4D554_SOLLC (Histone H2B OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 58  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 117

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 118 GELAKHAVSEGTKAVTKFTSS 138

Query: 161  220
           
Sbjct: 178  138

Query: 221  280
           
Sbjct: 238  138

Query: 281  284
           
Sbjct: 298  138

[Close]

BLAST of CU102059 vs. TrEMBL
Match: K4C323_SOLLC (Histone H2B OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 67  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 126

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 127 GELAKHAVSEGTKAVTKFTSS 147

Query: 161  220
           
Sbjct: 187  147

Query: 221  280
           
Sbjct: 247  147

Query: 281  284
           
Sbjct: 307  147

[Close]

BLAST of CU102059 vs. TrEMBL
Match: A0A0V0H223_SOLCH (Histone H2B OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 67  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 126

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 127 GELAKHAVSEGTKAVTKFTSS 147

Query: 161  220
           
Sbjct: 187  147

Query: 221  280
           
Sbjct: 247  147

Query: 281  284
           
Sbjct: 307  147

[Close]

BLAST of CU102059 vs. TrEMBL
Match: A0A0V0GXG2_SOLCH (Histone H2B (Fragment) OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.4e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 56  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 115

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 116 GELAKHAVSEGTKAVTKFTSS 136

Query: 161  220
           
Sbjct: 176  136

Query: 221  280
           
Sbjct: 236  136

Query: 281  284
           
Sbjct: 296  136

[Close]

BLAST of CU102059 vs. NCBI nr
Match: gi|970008248|ref|XP_015065005.1| (PREDICTED: histone H2B-like [Solanum pennellii])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 59  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 118

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 119 GELAKHAVSEGTKAVTKFTSS 139

Query: 161  220
           
Sbjct: 179  139

Query: 221  280
           
Sbjct: 239  139

Query: 281  284
           
Sbjct: 299  139

[Close]

BLAST of CU102059 vs. NCBI nr
Match: gi|449450686|ref|XP_004143093.1| (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 72  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 131

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 132 GELAKHAVSEGTKAVTKFTSS 152

Query: 161  220
           
Sbjct: 192  152

Query: 221  280
           
Sbjct: 252  152

Query: 281  284
           
Sbjct: 312  152

[Close]

BLAST of CU102059 vs. NCBI nr
Match: gi|21617908|gb|AAM66958.1| (histone H2B [Arabidopsis thaliana])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 68  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 127

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 128 GELAKHAVSEGTKAVTKFTSS 148

Query: 161  220
           
Sbjct: 188  148

Query: 221  280
           
Sbjct: 248  148

Query: 281  284
           
Sbjct: 308  148

[Close]

BLAST of CU102059 vs. NCBI nr
Match: gi|901803922|gb|KMZ62899.1| (putative histone H2B.1 [Zostera marina])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 66  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 125

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 126 GELAKHAVSEGTKAVTKFTSS 146

Query: 161  220
           
Sbjct: 186  146

Query: 221  280
           
Sbjct: 246  146

Query: 281  284
           
Sbjct: 306  146

[Close]

BLAST of CU102059 vs. NCBI nr
Match: gi|15223016|ref|NP_172258.1| (histone H2B [Arabidopsis thaliana])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 2


Query: 41  VAAEVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 100
           V  +VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 68  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 127

Query: 101 GELAKHAVSEGTKAVTKFTSS 160
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 128 GELAKHAVSEGTKAVTKFTSS 148

Query: 161  220
           
Sbjct: 188  148

Query: 221  280
           
Sbjct: 248  148

Query: 281  284
           
Sbjct: 308  148

The following BLAST results are available for this feature:

BLAST of CU102059 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B1_ARATH	5.8e-36	96.30	Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3	[more]
H2B1_MEDTR	1.3e-35	95.06	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B11_ARATH	1.3e-35	95.06	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]
H2B3_ARATH	1.3e-35	95.06	Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3	[more]
H2B3_MEDTR	1.7e-35	93.83	Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3	[more]

BLAST of CU102059 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHC9_CUCSA	6.4e-34	96.30	Histone H2B OS=Cucumis sativus GN=Csa_6G193620 PE=3 SV=1	[more]
K4D554_SOLLC	6.4e-34	96.30	Histone H2B OS=Solanum lycopersicum PE=3 SV=1	[more]
K4C323_SOLLC	6.4e-34	96.30	Histone H2B OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A0V0H223_SOLCH	6.4e-34	96.30	Histone H2B OS=Solanum chacoense PE=3 SV=1	[more]
A0A0V0GXG2_SOLCH	6.4e-34	96.30	Histone H2B (Fragment) OS=Solanum chacoense PE=3 SV=1	[more]

BLAST of CU102059 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|970008248\|ref\|XP_015065005.1\|	2.1e-33	96.30	PREDICTED: histone H2B-like [Solanum pennellii]	[more]
gi\|449450686\|ref\|XP_004143093.1\|	2.1e-33	96.30	PREDICTED: histone H2B [Cucumis sativus]	[more]
gi\|21617908\|gb\|AAM66958.1\|	2.1e-33	96.30	histone H2B [Arabidopsis thaliana]	[more]
gi\|901803922\|gb\|KMZ62899.1\|	2.1e-33	96.30	putative histone H2B.1 [Zostera marina]	[more]
gi\|15223016\|ref\|NP_172258.1\|	2.1e-33	96.30	histone H2B [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G132160	Csa1G132160	gene
Csa1G132150	Csa1G132150	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FC556769	FC556769	EST
FC556787	FC556787	EST
G0081658	G0081658	EST
G0130193	G0130193	EST
G0137614	G0137614	EST
G0190462	G0190462	EST
H0125920	H0125920	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 27..47 score: 1.0E-41coord: 79..92 score: 1.0E-41coord: 66..79 score: 1.0E-41coord: 49..66 score: 1.0E-41coord: 8..26 score: 1.0
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 19..95 score: 5.7
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 2..94 score: 3.7
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 63..85 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 18..71 score: 5.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 12..95 score: 1.6
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 11..95 score: 1.61