CU102018 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU102018
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 19698868 .. 19699555 (+)
Sequence length	684

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGCCGCCAGCGTGCTAACGGCCCCACCGGGAATTTCTTCTCGACAAATCCGGCTGTCGCGACGATATGCTCCACCATTCCGTCGAGGAGGGACGGCGGCGCGTGGCCCTCTCCATTCCATAACCACACGCGTGACATACCTCTGAGAACCGCCGTTGACATGGCGTGATTCATGTTTGTGCCATTTGAAAATAGAAGGGCTCAAATGGACGGCGAAGGTCAACACCACCGTCGAGCTGCTCAACGGCGACATTAGAAGGGAGATCACGGAGGGAGAGCGTGAGATGCACGCTTTTGATTATCTTCTTTGGGAGGTGATGTGAAGGGTAGATCAGATTCTGAATGAAGTTACTAGCGTTGAGGAGTAGGCGCGTGGCTTCGTCATTTGAAACGTAGAAGAGATCGAAACGTTGACCGGCGGAGGAGCCTTTGGCGTTGTTGAGAATTGTTATGTCGAAGCCTTTTGAGGCTTCGTGATTGGCCCATAGTGAAGTGAGGCCGACGACGGCGACGAGAAGGAGGCGGAGGGCGATGGCGTGATTGGAGAGGTGAGGAGAAGTGGGAGTGGTGGTGGGGGAGGGGGAGGTTGAGGAGATGAGAGGTTGAGAAAGGGATCGGCGGTTTTCCATGGTTGAAGGATAATTATAGAATTGATAGAGGGATTCGCCTTTGGTTGAACGTTTTC

Library


Library category	ESTs
fruit (8DPP) library	5
gynoecious flower library	3
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU102018 vs. TrEMBL
Match: A0A0A0KGU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423460 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44
Identity = 101/147 (68.71%), Postives = 101/147 (68.71%), Query Frame = -3


Query: 188 MENRRXXXXXXXXXXXXXXXXXXXXXXXXNHXXXXXXXXXXXXXXTSLWANHEASKGFDI 247
           MENRR                        NH              TSLWANHEASKGFDI
Sbjct: 1   MENRRSLSQPLISSTSPAPTTTPTSPHLSNHAIALRLLLVAVVGLTSLWANHEASKGFDI 60

Query: 248 TILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHLPKKIIKSVHLTLSL 307
           TILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHLPKKIIKSVHLTLSL
Sbjct: 61  TILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHLPKKIIKSVHLTLSL 120

Query: 308 RDLPSNVAVEQLDGGVDLRRPFEPFYF 367
           RDLPSNVAVEQLDGGVD      P  F
Sbjct: 121 RDLPSNVAVEQLDGGVDFAVHLSPSIF 147

Query: 368  427
           
Sbjct: 181  147

Query: 428  487
           
Sbjct: 241  147

Query: 488  547
           
Sbjct: 301  147

Query: 548  607
           
Sbjct: 361  147

Query: 608  629
           
Sbjct: 421  147

[Close]

BLAST of CU102018 vs. TrEMBL
Match: A0A0A0KGU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423460 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = -2


Query: 12  SPSI*ALLFSNGTNMNHAMSTAVLRGMSRVWLWNGEGHAPPSLLDGMVEHIVATAGFVEK 71
           SPSI      NGTNMNHAMSTAVLRGMSRVWLWNGEGHAPPSLLDGMVEHIVATAGFVEK
Sbjct: 143 SPSI-----FNGTNMNHAMSTAVLRGMSRVWLWNGEGHAPPSLLDGMVEHIVATAGFVEK 202

Query: 72  KFPVGPLA 131
           K+P G ++
Sbjct: 203 KYPGGAVS 205

Query: 132  191
           
Sbjct: 263  205

Query: 192  216
           
Sbjct: 323  205

HSP 2 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = -3


Query: 239 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHL 298
           S+WANHEASKGF++TI+NNAK S AGQRF LFYVSNDEATR++LN S  ++N++YP  + 
Sbjct: 52  SIWANHEASKGFNVTIINNAKESPAGQRFALFYVSNDEATRIILNTSAVVENILYPDPNQ 111

Query: 299 PKKIIKSVHLTLSLRDLPSNVAVE 358
            KK +  V L L+ ++L S V V+
Sbjct: 112 TKKPVHHVILQLASKNLTSKVIVD 135

Query: 359  418
           
Sbjct: 172  135

Query: 419  478
           
Sbjct: 232  135

Query: 479  491
           
Sbjct: 292  135

[Close]

BLAST of CU102018 vs. TrEMBL
Match: A0A061DSQ8_THECC (Plant basic secretory protein family protein, putative OS=Theobroma cacao GN=TCM_001874 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = -2


Query: 45  SPSI*ALLFSNGTNMNHAMSTAVLRGMSRVWLWNGEGHAPPSLLDGMVEHIVATAGF 104
           SPSI       G+N+ H +  A+ R M+R+WLW+GE  APP L+DGM E+I   AGF
Sbjct: 149 SPSI-----LEGSNVKHDVIFAIQRAMARIWLWDGESRAPPWLIDGMEEYIWMQAGF 200

Query: 105  164
           
Sbjct: 209  200

Query: 165  216
           
Sbjct: 269  200

HSP 2 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = -3


Query: 269 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHL 328
           S+WANHEASKGFDITI+N AK S AG+RF+LFY+SND+ATR+LLN S+F +N++YP+ + 
Sbjct: 63  SIWANHEASKGFDITIINEAKDSPAGRRFELFYISNDKATRILLNTSSFAENILYPNTNF 122

Query: 329 PKKIIKSV-HLTLSL 388
                K V H+TL L
Sbjct: 123 SLDSKKQVQHVTLRL 137

Query: 389  448
           
Sbjct: 183  137

Query: 449  491
           
Sbjct: 243  137

[Close]

BLAST of CU102018 vs. TrEMBL
Match: V4VDE9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033364mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.5e-08
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = -2


Query: 21  SNGTNMNHAMSTAVLRGMSRVWLWNGEGHAPPSLLDGMVEHIVATAGFVEKKFPVG 80
           +N  N NHA+ +A+ RGM+R+WLW+G+  APPSL+ G+VE+I   AGF + K  VG
Sbjct: 171 TNIANANHAIVSALQRGMARIWLWDGQSRAPPSLIQGLVEYISMLAGFGDAKNYVG 226

Query: 81   140
           
Sbjct: 231  226

Query: 141  189
           
Sbjct: 291  226

HSP 2 Score: 92.0 bits (227), Expect = 9.7e-16
Identity = 44/85 (51.76%), Postives = 66/85 (77.65%), Query Frame = -3


Query: 239 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPS-HH 298
           S+WAN+EASKGF IT++N+AK S+ G+RF L Y+SND+ATR++LN S F++NL+YP+ + 
Sbjct: 64  SIWANYEASKGFGITLVNDAKDSAEGKRFTLSYISNDKATRIILNTSLFVENLLYPNIND 123

Query: 299 LPKKIIKSVHLTLSLRDLPSNVAVE 358
             K++I  V L L+  +LP+ V V+
Sbjct: 124 TKKQVIHHVTLRLASNNLPNLVTVD 148

Query: 359  418
           
Sbjct: 184  148

Query: 419  478
           
Sbjct: 244  148

Query: 479  491
           
Sbjct: 304  148

[Close]

BLAST of CU102018 vs. TrEMBL
Match: B9H816_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22400g PE=4 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = -2


Query: 45  SPSI*ALLFSNGTNMNHAMSTAVLRGMSRVWLWNGEGHAPPSLLDGMVEHIVATAGF 104
           SPS+   L  +  N+++A+++ VL+GM+R W+W+ E  AP  LLDGMVE+I   AGF
Sbjct: 160 SPSV---LMGHPKNLDYAITSVVLQGMARAWIWDSESRAPQWLLDGMVEYINGLAGF 213

Query: 105  164
           
Sbjct: 220  213

Query: 165  216
           
Sbjct: 280  213

HSP 2 Score: 92.0 bits (227), Expect = 9.7e-16
Identity = 46/84 (54.76%), Postives = 68/84 (80.95%), Query Frame = -3


Query: 242 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHL 301
           S+WAN+EASK F+I+I+N+AK S AG+RF LFYVSND+ATR++LN S+++++ +YP++++
Sbjct: 66  SIWANYEASKTFNISIVNDAKDSLAGRRFALFYVSNDKATRIILNTSSYVEHFLYPNNNI 125

Query: 302 -PKKIIKSVHLTLSLRDLPSNVAV 361
             KK I SV L L  R+L + VAV
Sbjct: 126 YRKKNIDSVTLRLPRRNLNATVAV 149

Query: 362  421
           
Sbjct: 186  149

Query: 422  481
           
Sbjct: 246  149

Query: 482  491
           
Sbjct: 306  149

[Close]

BLAST of CU102018 vs. NCBI nr
Match: gi|778716617|ref|XP_004140255.2| (PREDICTED: uncharacterized protein LOC101221763 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 8.4e-45
Identity = 101/147 (68.71%), Postives = 101/147 (68.71%), Query Frame = -3


Query: 188 MENRRXXXXXXXXXXXXXXXXXXXXXXXXNHXXXXXXXXXXXXXXTSLWANHEASKGFDI 247
           MENRR                        NH              TSLWANHEASKGFDI
Sbjct: 1   MENRRSLSQPLISSTSPAPTTTPTSPHLSNHAIALRLLLVAVVGLTSLWANHEASKGFDI 60

Query: 248 TILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHLPKKIIKSVHLTLSL 307
           TILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHLPKKIIKSVHLTLSL
Sbjct: 61  TILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHLPKKIIKSVHLTLSL 120

Query: 308 RDLPSNVAVEQLDGGVDLRRPFEPFYF 367
           RDLPSNVAVEQLDGGVD      P  F
Sbjct: 121 RDLPSNVAVEQLDGGVDFAVHLSPSIF 147

Query: 368  427
           
Sbjct: 181  147

Query: 428  487
           
Sbjct: 241  147

Query: 488  547
           
Sbjct: 301  147

Query: 548  607
           
Sbjct: 361  147

Query: 608  629
           
Sbjct: 421  147

[Close]

BLAST of CU102018 vs. NCBI nr
Match: gi|659097291|ref|XP_008449544.1| (PREDICTED: uncharacterized protein LOC103491397 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 91/102 (89.22%), Postives = 91/102 (89.22%), Query Frame = -3


Query: 188 TSLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHH 247
           TSLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPS  
Sbjct: 47  TSLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSQD 106

Query: 248 LPKKIIKSVHLTLSLRDLPSNVAVEQLDGGVDLRRPFEPFYF 307
           LPKKIIKSVHLTLSLRDL SNVAVEQLDGGVD      P  F
Sbjct: 107 LPKKIIKSVHLTLSLRDLSSNVAVEQLDGGVDFAVHLSPSIF 148

Query: 308  367
           
Sbjct: 167  148

Query: 368  427
           
Sbjct: 227  148

Query: 428  487
           
Sbjct: 287  148

Query: 488  494
           
Sbjct: 347  148

[Close]

BLAST of CU102018 vs. NCBI nr
Match: gi|590710556|ref|XP_007048861.1| (Plant basic secretory protein family protein, putative [Theobroma cacao])

HSP 1 Score: 103.6 bits (257), Expect = 4.6e-19
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = -3


Query: 239 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHL 298
           S+WANHEASKGF++TI+NNAK S AGQRF LFYVSNDEATR++LN S  ++N++YP  + 
Sbjct: 52  SIWANHEASKGFNVTIINNAKESPAGQRFALFYVSNDEATRIILNTSAVVENILYPDPNQ 111

Query: 299 PKKIIKSVHLTLSLRDLPSNVAVE 358
            KK +  V L L+ ++L S V V+
Sbjct: 112 TKKPVHHVILQLASKNLTSKVIVD 135

Query: 359  418
           
Sbjct: 172  135

Query: 419  478
           
Sbjct: 232  135

Query: 479  491
           
Sbjct: 292  135

[Close]

BLAST of CU102018 vs. NCBI nr
Match: gi|719973609|ref|XP_010242107.1| (PREDICTED: uncharacterized protein LOC104586537 [Nelumbo nucifera])

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = -3


Query: 239 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYP--SH 298
           S+WAN+EASKGF+I I+N A  + AG+RF+LF+VSND+ TR++LN S F Q ++YP   H
Sbjct: 49  SIWANYEASKGFEIIIINEAGDTPAGRRFELFFVSNDKVTRIILNTSEFAQRVLYPDDDH 108

Query: 299 HLPKKIIKSVHLTLSLRDLPSNVAVE 358
           HLPKK +  V + L+ R LP  V VE
Sbjct: 109 HLPKKKVDRVTVRLASRKLPHAVVVE 134

Query: 359  418
           
Sbjct: 169  134

Query: 419  478
           
Sbjct: 229  134

Query: 479  491
           
Sbjct: 289  134

[Close]

BLAST of CU102018 vs. NCBI nr
Match: gi|567889314|ref|XP_006437179.1| (hypothetical protein CICLE_v10033364mg [Citrus clementina])

HSP 1 Score: 96.7 bits (239), Expect = 5.7e-17
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = -3


Query: 269 SLWANHEASKGFDITILNNAKGSSAGQRFDLFYVSNDEATRLLLNASNFIQNLIYPSHHL 328
           S+WANHEASKGFDITI+N AK S AG+RF+LFY+SND+ATR+LLN S+F +N++YP+ + 
Sbjct: 63  SIWANHEASKGFDITIINEAKDSPAGRRFELFYISNDKATRILLNTSSFAENILYPNTNF 122

Query: 329 PKKIIKSV-HLTLSL 388
                K V H+TL L
Sbjct: 123 SLDSKKQVQHVTLRL 137

Query: 389  448
           
Sbjct: 183  137

Query: 449  491
           
Sbjct: 243  137

The following BLAST results are available for this feature:

BLAST of CU102018 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGU9_CUCSA	1.3e-44	68.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423460 PE=4 SV=1	[more]
A0A0A0KGU9_CUCSA	6.3e-23	83.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423460 PE=4 SV=1	[more]
A0A061DSQ8_THECC	2.0e-05	49.12	Plant basic secretory protein family protein, putative OS=Theobroma cacao GN=TCM...	[more]
V4VDE9_9ROSI	7.5e-08	51.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033364mg PE=4 SV=1	[more]
B9H816_POPTR	1.6e-05	47.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22400g PE=4 SV=2	[more]

BLAST of CU102018 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716617\|ref\|XP_004140255.2\|	8.4e-45	68.71	PREDICTED: uncharacterized protein LOC101221763 [Cucumis sativus]	[more]
gi\|659097291\|ref\|XP_008449544.1\|	1.1e-41	89.22	PREDICTED: uncharacterized protein LOC103491397 [Cucumis melo]	[more]
gi\|590710556\|ref\|XP_007048861.1\|	4.6e-19	58.33	Plant basic secretory protein family protein, putative [Theobroma cacao]	[more]
gi\|719973609\|ref\|XP_010242107.1\|	1.9e-17	54.65	PREDICTED: uncharacterized protein LOC104586537 [Nelumbo nucifera]	[more]
gi\|567889314\|ref\|XP_006437179.1\|	5.7e-17	61.33	hypothetical protein CICLE_v10033364mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G423460	Csa6G423460	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02L3HRL	FKNP3UI02L3HRL	EST
FKNP3UI02L8DGD	FKNP3UI02L8DGD	EST
FKNP3UI02LF18S	FKNP3UI02LF18S	EST
FKNP3UI02N924C	FKNP3UI02N924C	EST
FKNP3UI02OAGVX	FKNP3UI02OAGVX	EST
G0038359	G0038359	EST
G0149670	G0149670	EST
G0150806	G0150806	EST
H0141577	H0141577	EST
H0150698	H0150698	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33321	FAMILY NOT NAMED	coord: 6..130 score: 5.0
None	No IPR available	PANTHER	PTHR33321:SF3	SUBFAMILY NOT NAMED	coord: 6..130 score: 5.0