CU101454 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU101454
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Rubredoxin family protein
Location	Chr1 : 97332 .. 98534 (+)
Sequence length	565

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGATTCACTATTCTTTCATTCACCCATTCTCTCTGAGTTTCTGCTGCTCCTACACATCCTTCTCTCTCTGCTTTACTCCCCTTCCAATGGCTTCCATTTCAGCTTCTTCTCTCAGTTTCCACCTTCCACCGAAGCCACATTACAAGCTTAACCAGGAAGACGGCGGCACTGATAGGAACTCCATGTTTTTGGACTCTGCCTCCAACCGCTTATCTTTGAAATCTTCCTTCATCTCTCCTTTACGTAAGATTCCTTCTTTAAGGAAGCAAAACTCTGTTGTTGCTGCTGCTTCTCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGCCGTGATTGCGGGTACATTTACAACGATAGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGTCTGTGGTGCTCCTAAGCGACGTTTTAGACCTTACGAGCAAACTGTGAGTAAAATGATAACGAATTTGATGTGAGGAAGGCGAGAAAGGCGCAGATCCAAAAAGATGAAGCTATTGGGGAAGGTGCTGCCTATTGCTGCTGCACTGGGAATCGTGGC

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	2
hermaphrodite flower library	7

Homology

[Close]

BLAST of CU101454 vs. Swiss-Prot
Match: RUBR1_DESDA (Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rd1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-06
Identity = 22/43 (51.16%), Postives = 25/43 (58.14%), Query Frame = 3


Query: 324 QAYICRDCGYIYN----DRTPFDKLPDKYFCPVCGAPKRRFRP 383
           Q Y+C  CGY Y+    D  PFD+LPD + CPVCG  K +F P
Sbjct: 2   QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44

Query: 384  441
           
Sbjct: 62   44

[Close]

BLAST of CU101454 vs. TrEMBL
Match: A0A0A0LNF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000640 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 7.9e-72
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 3


Query: 87  MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 146
           MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK
Sbjct: 1   MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 60

Query: 147 QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 206
           QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 207 QTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAAALGIV 266
           QTVSK        +  + + +K + +GKVLPIAAALGIV
Sbjct: 121 QTVSKNDNEFDVRKARKAQIQKDEAIGKVLPIAAALGIV 159

Query: 267  326
           
Sbjct: 181  159

Query: 327  386
           
Sbjct: 241  159

Query: 387  446
           
Sbjct: 301  159

Query: 447  506
           
Sbjct: 361  159

Query: 507  564
           
Sbjct: 421  159

[Close]

BLAST of CU101454 vs. TrEMBL
Match: E5GBM0_CUCME (Electron transporter OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.1e-71
Identity = 136/159 (85.53%), Postives = 145/159 (91.19%), Query Frame = 3


Query: 87  MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 146
           MAS+SASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLR+
Sbjct: 1   MASVSASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRR 60

Query: 147 QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 206
           QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 207 QTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAAALGIV 266
           QTV+K        +  + + +K + +GKVLPIAAALGIV
Sbjct: 121 QTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIV 159

Query: 267  326
           
Sbjct: 181  159

Query: 327  386
           
Sbjct: 241  159

Query: 387  446
           
Sbjct: 301  159

Query: 447  506
           
Sbjct: 361  159

Query: 507  564
           
Sbjct: 421  159

[Close]

BLAST of CU101454 vs. TrEMBL
Match: A0A022Q3G4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015294mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-33
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 3


Query: 189 LDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDR 248
           L  +S+R +LKSSF SP   +  +  Q S + A +PKFSMRVASKQAYICRDCGYIYNDR
Sbjct: 26  LRQSSDRFALKSSFFSPSLNL-LMPSQVSTLPATAPKFSMRVASKQAYICRDCGYIYNDR 85

Query: 249 TPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAA 308
           TPFDK PD YFCPVCGAPKRRFR YE  VSK   +L   +  + + KK + +GK LP A 
Sbjct: 86  TPFDKKPDNYFCPVCGAPKRRFRAYEPPVSKDANDLSVRKARKEQIKKDEAIGKALPFAI 145

Query: 309 ALGI 368
           ALG+
Sbjct: 146 ALGV 148

Query: 369  428
           
Sbjct: 206  148

Query: 429  488
           
Sbjct: 266  148

Query: 489  548
           
Sbjct: 326  148

Query: 549  561
           
Sbjct: 386  148

[Close]

BLAST of CU101454 vs. TrEMBL
Match: G3MRN6_9ACAR (Uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 3


Query: 201 SNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFD 260
           S+R +L+SSF SP  +   L      V    PKFSMRVASKQAYICRDCGYIYND+TPF+
Sbjct: 33  SDRYALRSSFFSPSVQQLLLSSSQKAVPTTEPKFSMRVASKQAYICRDCGYIYNDKTPFE 92

Query: 261 KLPDKYFCPVCGAPKRRFRPYEQTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAAALGI 320
           KLPDKYFCPVCGAPKRRFR YE  ++K   +L   +  + + K+ + +GK LP+A  LG+
Sbjct: 93  KLPDKYFCPVCGAPKRRFRAYEPKITKDANSLDVRKARKEQLKRDEAIGKALPVALVLGV 152

Query: 321  380
           
Sbjct: 153  152

Query: 381  440
           
Sbjct: 213  152

Query: 441  500
           
Sbjct: 273  152

Query: 501  560
           
Sbjct: 333  152

[Close]

BLAST of CU101454 vs. TrEMBL
Match: E6NU05_JATCU (JHL07K02.5 protein OS=Jatropha curcas GN=JHL07K02.5 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.8e-31
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = 3


Query: 189 LDSASNRLSLKSSFISPLRKIPSLRKQNSV---VAAASPKFSMRVASKQAYICRDCGYIY 248
           L + S+R +LKSSF SP   + SL   N +   +A+++P++SMRVASKQAYICRDCGYIY
Sbjct: 28  LRAPSDRFALKSSFFSPSLYLLSLANSNQLQQPLASSAPRYSMRVASKQAYICRDCGYIY 87

Query: 249 NDRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKMITNLM*GRRERRRSKKMKLLGKVLP 308
           N+RTPF+KLPDKYFCPVCGAPKRRF+PY  TV+K        +  + + ++ + +G+ LP
Sbjct: 88  NERTPFEKLPDKYFCPVCGAPKRRFKPYAPTVTKNDNQTDVRKARKAQLQRDEAIGRALP 147

Query: 309 IAAALGIV 368
           I  A+G V
Sbjct: 148 IGIAVGAV 155

Query: 369  428
           
Sbjct: 208  155

Query: 429  488
           
Sbjct: 268  155

Query: 489  548
           
Sbjct: 328  155

Query: 549  564
           
Sbjct: 388  155

[Close]

BLAST of CU101454 vs. NCBI nr
Match: gi|449440502|ref|XP_004138023.1| (PREDICTED: uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 9.6e-71
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 3


Query: 87  MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 146
           MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK
Sbjct: 1   MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 60

Query: 147 QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 206
           QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 207 QTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAAALGIV 266
           QTVSK        +  + + +K + +GKVLPIAAALGIV
Sbjct: 121 QTVSKNDNEFDVRKARKAQIQKDEAIGKVLPIAAALGIV 159

Query: 267  326
           
Sbjct: 181  159

Query: 327  386
           
Sbjct: 241  159

Query: 387  446
           
Sbjct: 301  159

Query: 447  506
           
Sbjct: 361  159

Query: 507  564
           
Sbjct: 421  159

[Close]

BLAST of CU101454 vs. NCBI nr
Match: gi|659128800|ref|XP_008464376.1| (PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 6.2e-70
Identity = 136/159 (85.53%), Postives = 145/159 (91.19%), Query Frame = 3


Query: 87  MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 146
           MAS+SASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLR+
Sbjct: 1   MASVSASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRR 60

Query: 147 QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 206
           QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 207 QTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAAALGIV 266
           QTV+K        +  + + +K + +GKVLPIAAALGIV
Sbjct: 121 QTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIV 159

Query: 267  326
           
Sbjct: 181  159

Query: 327  386
           
Sbjct: 241  159

Query: 387  446
           
Sbjct: 301  159

Query: 447  506
           
Sbjct: 361  159

Query: 507  564
           
Sbjct: 421  159

[Close]

BLAST of CU101454 vs. NCBI nr
Match: gi|778655218|ref|XP_011649175.1| (PREDICTED: uncharacterized protein LOC101207574 isoform X2 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 107/127 (84.25%), Postives = 113/127 (88.98%), Query Frame = 3


Query: 183 MFLDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYN 242
           MFLDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYN
Sbjct: 1   MFLDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYN 60

Query: 243 DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKMITNLM*GRRERRRSKKMKLLGKVLPI 302
           DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSK        +  + + +K + +GKVLPI
Sbjct: 61  DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKNDNEFDVRKARKAQIQKDEAIGKVLPI 120

Query: 303 AAALGIV 362
           AAALGIV
Sbjct: 121 AAALGIV 127

Query: 363  422
           
Sbjct: 181  127

Query: 423  482
           
Sbjct: 241  127

Query: 483  542
           
Sbjct: 301  127

Query: 543  564
           
Sbjct: 361  127

[Close]

BLAST of CU101454 vs. NCBI nr
Match: gi|659128802|ref|XP_008464377.1| (PREDICTED: uncharacterized protein LOC103502280 isoform X2 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 105/127 (82.68%), Postives = 113/127 (88.98%), Query Frame = 3


Query: 183 MFLDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYN 242
           MFLDSASNRLSLKSSFISPLRKIPSLR+QNSVVAAASPKFSMRVASKQAYICRDCGYIYN
Sbjct: 1   MFLDSASNRLSLKSSFISPLRKIPSLRRQNSVVAAASPKFSMRVASKQAYICRDCGYIYN 60

Query: 243 DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKMITNLM*GRRERRRSKKMKLLGKVLPI 302
           DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTV+K        +  + + +K + +GKVLPI
Sbjct: 61  DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPI 120

Query: 303 AAALGIV 362
           AAALGIV
Sbjct: 121 AAALGIV 127

Query: 363  422
           
Sbjct: 181  127

Query: 423  482
           
Sbjct: 241  127

Query: 483  542
           
Sbjct: 301  127

Query: 543  564
           
Sbjct: 361  127

[Close]

BLAST of CU101454 vs. NCBI nr
Match: gi|848918823|ref|XP_012856579.1| (PREDICTED: uncharacterized protein LOC105975885 [Erythranthe guttata])

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 3


Query: 189 LDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDR 248
           L  +S+R +LKSSF SP   +  +  Q S + A +PKFSMRVASKQAYICRDCGYIYNDR
Sbjct: 26  LRQSSDRFALKSSFFSPSLNL-LMPSQVSTLPATAPKFSMRVASKQAYICRDCGYIYNDR 85

Query: 249 TPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKMITNLM*GRRERRRSKKMKLLGKVLPIAA 308
           TPFDK PD YFCPVCGAPKRRFR YE  VSK   +L   +  + + KK + +GK LP A 
Sbjct: 86  TPFDKKPDNYFCPVCGAPKRRFRAYEPPVSKDANDLSVRKARKEQIKKDEAIGKALPFAI 145

Query: 309 ALGI 368
           ALG+
Sbjct: 146 ALGV 148

Query: 369  428
           
Sbjct: 206  148

Query: 429  488
           
Sbjct: 266  148

Query: 489  548
           
Sbjct: 326  148

Query: 549  561
           
Sbjct: 386  148

The following BLAST results are available for this feature:

BLAST of CU101454 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUBR1_DESDA	6.3e-06	51.16	Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rd...	[more]

BLAST of CU101454 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNF5_CUCSA	7.9e-72	87.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000640 PE=4 SV=1	[more]
E5GBM0_CUCME	5.1e-71	85.53	Electron transporter OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A022Q3G4_ERYGU	4.2e-33	60.48	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015294mg PE=4 SV=1	[more]
G3MRN6_9ACAR	1.8e-31	56.67	Uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1	[more]
E6NU05_JATCU	6.8e-31	53.91	JHL07K02.5 protein OS=Jatropha curcas GN=JHL07K02.5 PE=4 SV=1	[more]

BLAST of CU101454 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440502\|ref\|XP_004138023.1\|	9.6e-71	87.42	PREDICTED: uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus]	[more]
gi\|659128800\|ref\|XP_008464376.1\|	6.2e-70	85.53	PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo]	[more]
gi\|778655218\|ref\|XP_011649175.1\|	2.2e-51	84.25	PREDICTED: uncharacterized protein LOC101207574 isoform X2 [Cucumis sativus]	[more]
gi\|659128802\|ref\|XP_008464377.1\|	1.1e-50	82.68	PREDICTED: uncharacterized protein LOC103502280 isoform X2 [Cucumis melo]	[more]
gi\|848918823\|ref\|XP_012856579.1\|	2.3e-32	60.48	PREDICTED: uncharacterized protein LOC105975885 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004039	Rubredoxin-type fold
IPR024934	Rubredoxin-like_dom
IPR024935	Rubredoxin_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005506	iron ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G000640	Csa1G000640	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LAYGM	FKNP3UI02LAYGM	EST
G0033917	G0033917	EST
G0114776	G0114776	EST
H0109310	H0109310	EST
H0110135	H0110135	EST
H0132362	H0132362	EST
H0153294	H0153294	EST
H0164073	H0164073	EST
H0179688	H0179688	EST
H0183934	H0183934	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004039	Rubredoxin-type fold	GENE3D	G3DSA:2.20.28.10		coord: 78..120 score: 3.3
IPR024934	Rubredoxin-like domain	PROFILE	PS50903	RUBREDOXIN_LIKE	coord: 79..119 score: 12
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 82..116 score: 5.
None	No IPR available	PANTHER	PTHR17130	MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25	coord: 31..148 score: 2.7
None	No IPR available	PANTHER	PTHR17130:SF25	SUBFAMILY NOT NAMED	coord: 31..148 score: 2.7
None	No IPR available	unknown	SSF57802	Rubredoxin-like	coord: 79..125 score: 3.53