CU097557 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU097557
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	cAMP-regulated phosphoprotein 19-related protein
Location	Chr3 : 13112840 .. 13115406 (-)
Sequence length	472

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGAGCAGATTAGATCCGGAGATTCGAAAATTCTTCGTTCTTCGTCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCGAAGTCAACCTGCAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTTCTAGTTAATCATGTCTGAGCATATCAAAGAGGCCGAACGAGTGGGTGGAGATGGACATGTTGGATCTGAAGAATCTATGTCGTCATCTCGTAAAGAGGAGGAAGTTATAAGAAAAATATGGAGGAATTGTTCCCAAGAAGCCACCACTCATTTCTAAGGATCATGAACGTGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGCAAGGAGTTGAGAAGCCGAAAGGACCTTTAGAAGCTCTTCGGCCGAAAATTACAGCCAACACAACAGCAAAACACGGTACAGGAAGTCTCCTTGTGCTCCATCAGATGGCGAAGATGGGCG

Library


Library category	ESTs
fruit (8DPP) library	7
gynoecious flower library	1
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU097557 vs. TrEMBL
Match: B9TEW9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1925410 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKITANTTAKH 309
           + +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+      +H
Sbjct: 30  IKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQGYLEEEH 88

Query: 310  369
           
Sbjct: 90   88

Query: 370  427
           
Sbjct: 150  88

[Close]

BLAST of CU097557 vs. TrEMBL
Match: A0A067FAM4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033401mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 309
           L +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 35  LKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 85

Query: 310  369
           
Sbjct: 95   85

Query: 370  403
           
Sbjct: 155  85

[Close]

BLAST of CU097557 vs. TrEMBL
Match: A0A067FAM4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033401mg PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 8.2e+02
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3


Query: 420 KTRYRKSPCAPSDGEDG 471
           +TRYRKSP AP+ GEDG
Sbjct: 91  QTRYRKSPYAPAGGEDG 107

HSP 2 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 309
           L +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 35  LKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 85

Query: 310  369
           
Sbjct: 95   85

Query: 370  403
           
Sbjct: 155  85

[Close]

BLAST of CU097557 vs. TrEMBL
Match: V4SXY0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013128mg PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 8.2e+02
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3


Query: 420 KTRYRKSPCAPSDGEDG 471
           +TRYRKSP AP+ GEDG
Sbjct: 91  QTRYRKSPYAPAGGEDG 107

HSP 2 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 309
           L +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 35  LKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 85

Query: 310  369
           
Sbjct: 95   85

Query: 370  403
           
Sbjct: 155  85

[Close]

BLAST of CU097557 vs. TrEMBL
Match: A0A161WTG9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010729 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 223 CRHLVKRRKL*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 282
           C    +   + +KYGGIVPKKPPL+SKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 23  CSSQSEEEVIKKKYGGIVPKKPPLVSKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 82

Query: 283  342
           
Sbjct: 83   82

Query: 343  402
           
Sbjct: 143  82

[Close]

BLAST of CU097557 vs. NCBI nr
Match: gi|645245935|ref|XP_008229118.1| (PREDICTED: uncharacterized protein LOC103328500 isoform X1 [Prunus mume])

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKITANTTAKHG 309
           + +KYGGI+PKKPPLISKDHERAYFDSADWALGKQGV+KPKGPLEALRPK + + ++KH 
Sbjct: 23  IKKKYGGIIPKKPPLISKDHERAYFDSADWALGKQGVDKPKGPLEALRPKFSPH-SSKHD 82

Query: 310 TGSLLVLHQMAKM 369
           T SL VLHQM KM
Sbjct: 83  TESLHVLHQMVKM 94

Query: 370  429
           
Sbjct: 143  94

Query: 430  469
           
Sbjct: 203  94

[Close]

BLAST of CU097557 vs. NCBI nr
Match: gi|223518543|gb|EEF25595.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKITANTTAKH 309
           + +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+      +H
Sbjct: 30  IKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQGYLEEEH 88

Query: 310  369
           
Sbjct: 90   88

Query: 370  427
           
Sbjct: 150  88

[Close]

BLAST of CU097557 vs. NCBI nr
Match: gi|567876181|ref|XP_006430680.1| (hypothetical protein CICLE_v10013128mg [Citrus clementina])

HSP 1 Score: 105.9 bits (263), Expect = 6.5e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 309
           L +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 35  LKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 85

Query: 310  369
           
Sbjct: 95   85

Query: 370  403
           
Sbjct: 155  85

[Close]

BLAST of CU097557 vs. NCBI nr
Match: gi|641844273|gb|KDO63167.1| (hypothetical protein CISIN_1g033401mg [Citrus sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 6.5e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 309
           L +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 35  LKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 85

Query: 310  369
           
Sbjct: 95   85

Query: 370  403
           
Sbjct: 155  85

[Close]

BLAST of CU097557 vs. NCBI nr
Match: gi|568857239|ref|XP_006482174.1| (PREDICTED: ribosome biogenesis protein erb1 isoform X2 [Citrus sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 6.5e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 250 L*EKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKI 309
           L +KYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPK+
Sbjct: 35  LKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL 85

Query: 310  369
           
Sbjct: 95   85

Query: 370  403
           
Sbjct: 155  85

The following BLAST results are available for this feature:

BLAST of CU097557 vs. TrEMBL


Match Name	E-value	Identity	Description
B9TEW9_RICCO	1.3e-19	81.36	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1925410 PE=4 SV=1	[more]
A0A067FAM4_CITSI	1.7e-19	94.12	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033401mg PE=4 SV=1	[more]
A0A067FAM4_CITSI	8.2e+02	76.47	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033401mg PE=4 SV=1	[more]
V4SXY0_9ROSI	8.2e+02	76.47	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013128mg PE=4 SV=1	[more]
A0A161WTG9_DAUCA	2.2e-19	78.33	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010729 PE=4 SV=1	[more]

BLAST of CU097557 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|645245935\|ref\|XP_008229118.1\|	2.5e-24	78.08	PREDICTED: uncharacterized protein LOC103328500 isoform X1 [Prunus mume]	[more]
gi\|223518543\|gb\|EEF25595.1\|	4.9e-20	81.36	conserved hypothetical protein [Ricinus communis]	[more]
gi\|567876181\|ref\|XP_006430680.1\|	6.5e-20	94.12	hypothetical protein CICLE_v10013128mg [Citrus clementina]	[more]
gi\|641844273\|gb\|KDO63167.1\|	6.5e-20	94.12	hypothetical protein CISIN_1g033401mg [Citrus sinensis]	[more]
gi\|568857239\|ref\|XP_006482174.1\|	6.5e-20	94.12	PREDICTED: ribosome biogenesis protein erb1 isoform X2 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006760	Endosulphine

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G186700	Csa3G186700	gene
Csa3G186710	Csa3G186710	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KLYAB	FKNP3UI02KLYAB	EST
FKNP3UI02KTJQ9	FKNP3UI02KTJQ9	EST
FKNP3UI02L563N	FKNP3UI02L563N	EST
FKNP3UI02MSLEN	FKNP3UI02MSLEN	EST
FKNP3UI02N675Y	FKNP3UI02N675Y	EST
FKNP3UI02NEMVC	FKNP3UI02NEMVC	EST
FKNP3UI02NZT65	FKNP3UI02NZT65	EST
G0159064	G0159064	EST
H0023968	H0023968	EST
H0156827	H0156827	EST
H0178029	H0178029	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006760	Endosulphine	PFAM	PF04667	Endosulfine	coord: 24..86 score: 1.1
None	No IPR available	PANTHER	PTHR10358	ENDOSULFINE	coord: 20..82 score: 1.0
None	No IPR available	PANTHER	PTHR10358:SF7	SUBFAMILY NOT NAMED	coord: 20..82 score: 1.0