CU095393 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU095393
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	L-ascorbate oxidase like
Location	Chr4 : 10500403 .. 10521059 (+)
Sequence length	289

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGAGGGGAACGGACAACAACCCATCTTGGGGATATACATAGCCTGCTCGAGAATAAGAGCAGTGATTTGAAAATATAGACAAAAAGAAGGGAGAGGTAGAAGATGGCTGGGATGATGTTTACCATGCTGCTTTGCCTCTCGGCTGCAGGAATGATGGCGACGGTCCGTGGTGAAGACCCTTATTTCTTCTTCACATGGAATGTCACCTATGGCACCATCTCTCCCTTGGGCGTTCCCCAACAAGGCATTCTCATCAATGGTCAATTCCCCGGACCTAATATAACTCCAC

Library


Library category	ESTs
gynoecious flower library	4
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU095393 vs. Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-15
Identity = 38/53 (71.70%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 124 MLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 183
           +LLCLS       V  EDPY +F WNVTYGTI+PLGVPQQGILINGQFPGP I
Sbjct: 11  LLLCLSVG-----VIAEDPYLYFNWNVTYGTIAPLGVPQQGILINGQFPGPRI 58

Query: 184  243
           
Sbjct: 71   58

Query: 244  283
           
Sbjct: 131  58

[Close]

BLAST of CU095393 vs. Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-13
Identity = 37/60 (61.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           M G+         AA     V  EDPYF   WNVTYGT SPLGVPQQ ILINGQFPGPNI
Sbjct: 1   MRGVKLLAACLYLAAAATVVVHAEDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.5e-07
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 1


Query: 175 DPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 234
           DPY F+ + V+Y T SPLGVPQQ I ING+FPGP I
Sbjct: 22  DPYSFYNFEVSYITASPLGVPQQVIAINGKFPGPTI 57

Query: 235  283
           
Sbjct: 82   57

[Close]

BLAST of CU095393 vs. Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-06
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1


Query: 112 MMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGP 171
           ++ + LLC +   + A     DP+  + + V+Y T SPLGVPQQ I +NGQFPGP
Sbjct: 7   LLASFLLCFAL--LSAVSFAADPFVSYDFRVSYLTASPLGVPQQVIAVNGQFPGP 59

Query: 172  231
           
Sbjct: 67   59

Query: 232  277
           
Sbjct: 127  59

[Close]

BLAST of CU095393 vs. TrEMBL
Match: A0A0A0KYZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267440 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPN+
Sbjct: 1   MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNV 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. TrEMBL
Match: A0A0A0KYZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267980 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-24
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MAG+MFT LLCLSAA M  TVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MAGLMFTALLCLSAAAMTVTVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. TrEMBL
Match: A0A0A0KWZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267480 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MA +MFT LLCL AA M ATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MARLMFTALLCLLAAAMTATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. TrEMBL
Match: A0A0A0L0B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267470 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MA MMFT+LLCLSAA  M+ VRGEDPYFFFTWN+TYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MATMMFTVLLCLSAA-TMSMVRGEDPYFFFTWNITYGTISPLGVPQQGILINGQFPGPNI 59

Query: 163  222
           
Sbjct: 61   59

Query: 223  282
           
Sbjct: 121  59

[Close]

BLAST of CU095393 vs. TrEMBL
Match: A0A0A0LQ79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031720 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-20
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MA +  +++LCL +   M TVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MARLTLSLMLCLLSVAAMQTVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. NCBI nr
Match: gi|778692720|ref|XP_011653513.1| (PREDICTED: L-ascorbate oxidase homolog [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPN+
Sbjct: 1   MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNV 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. NCBI nr
Match: gi|700198851|gb|KGN54009.1| (hypothetical protein Csa_4G267440 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPN+
Sbjct: 1   MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNV 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. NCBI nr
Match: gi|700198856|gb|KGN54014.1| (hypothetical protein Csa_4G267980 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MAG+MFT LLCLSAA M  TVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MAGLMFTALLCLSAAAMTVTVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. NCBI nr
Match: gi|659098052|ref|XP_008449954.1| (PREDICTED: L-ascorbate oxidase homolog [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 7.7e-24
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MAG+MFT LLCLSAA M   VRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MAGLMFTTLLCLSAAAMTTMVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

[Close]

BLAST of CU095393 vs. NCBI nr
Match: gi|700198855|gb|KGN54013.1| (hypothetical protein Csa_4G267480 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 103 MAGMMFTMLLCLSAAGMMATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 162
           MA +MFT LLCL AA M ATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI
Sbjct: 1   MARLMFTALLCLLAAAMTATVRGEDPYFFFTWNVTYGTISPLGVPQQGILINGQFPGPNI 60

Query: 163  222
           
Sbjct: 61   60

Query: 223  282
           
Sbjct: 121  60

The following BLAST results are available for this feature:

BLAST of CU095393 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ASOL_TOBAC	8.5e-15	71.70	L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1	[more]
ASOL_BRANA	1.2e-13	61.67	L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1	[more]
SKU5_ARATH	8.5e-07	66.67	Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1	[more]
SKS1_ARATH	5.5e-06	45.45	Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1	[more]

BLAST of CU095393 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYZ3_CUCSA	4.0e-27	98.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267440 PE=4 SV=1	[more]
A0A0A0KYZ5_CUCSA	2.4e-24	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267980 PE=4 SV=1	[more]
A0A0A0KWZ0_CUCSA	3.5e-23	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267480 PE=4 SV=1	[more]
A0A0A0L0B1_CUCSA	6.6e-22	88.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267470 PE=4 SV=1	[more]
A0A0A0LQ79_CUCSA	4.7e-20	78.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031720 PE=4 SV=1	[more]

BLAST of CU095393 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692720\|ref\|XP_011653513.1\|	2.6e-27	98.33	PREDICTED: L-ascorbate oxidase homolog [Cucumis sativus]	[more]
gi\|700198851\|gb\|KGN54009.1\|	2.6e-27	98.33	hypothetical protein Csa_4G267440 [Cucumis sativus]	[more]
gi\|700198856\|gb\|KGN54014.1\|	1.5e-24	91.67	hypothetical protein Csa_4G267980 [Cucumis sativus]	[more]
gi\|659098052\|ref\|XP_008449954.1\|	7.7e-24	90.00	PREDICTED: L-ascorbate oxidase homolog [Cucumis melo]	[more]
gi\|700198855\|gb\|KGN54013.1\|	2.2e-23	90.00	hypothetical protein Csa_4G267480 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008972	Cupredoxin

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G267460	Csa4G267460	gene
Csa4G267470	Csa4G267470	gene
Csa4G267440	Csa4G267440	gene
Csa4G267450	Csa4G267450	gene
Csa4G267480	Csa4G267480	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0006612	G0006612	EST
G0087611	G0087611	EST
G0128410	G0128410	EST
G0130841	G0130841	EST
H0145489	H0145489	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 29..61 score: 3.
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 6..61 score: 8.1
None	No IPR available	PANTHER	PTHR11709	MULTI-COPPER OXIDASE	coord: 1..60 score: 5.2
None	No IPR available	PANTHER	PTHR11709:SF27	L-ASCORBATE OXIDASE PECTINESTERASE-LIKE PROTEIN POLLEN-SPECIFIC PROTEIN-LIKE	coord: 1..60 score: 5.2