Csa4G267450 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G267450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 10503408 .. 10503698 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGATGATGAGGAATTGTTTGTGGACGAAAACAGACTTAAAAGCTTGGAAAATAGAGAGAAAATAATAGAAGTACGACTGGAATTGAAGGTGCGAAAACATGGTGGAAGAAAAGGATATATATAAAAGCGACACAGGATTGCAACGTTGTGACAAAATTTTAAAAGTGTTGAAATTAAACTTCAGGACACATTGTGGCACTCTAGGGCGACACTGCATGCTTTTGCTGCGCACTGCCCTCTTTGCCTTACAATGTCGCACATGGCGTTGTGGGGCTTCACAAAATAA

mRNA sequence

ATGCTAGATGATGAGGAATTGTTTGTGGACGAAAACAGACTTAAAAGCTTGGAAAATAGAGAGAAAATAATAGAAGTACGACTGGAATTGAAGGACACATTGTGGCACTCTAGGGCGACACTGCATGCTTTTGCTGCGCACTGCCCTCTTTGCCTTACAATGTCGCACATGGCGTTGTGGGGCTTCACAAAATAA

Coding sequence (CDS)

ATGCTAGATGATGAGGAATTGTTTGTGGACGAAAACAGACTTAAAAGCTTGGAAAATAGAGAGAAAATAATAGAAGTACGACTGGAATTGAAGGACACATTGTGGCACTCTAGGGCGACACTGCATGCTTTTGCTGCGCACTGCCCTCTTTGCCTTACAATGTCGCACATGGCGTTGTGGGGCTTCACAAAATAA

Protein sequence

MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALWGFTK*
Homology
[Close]
BLAST of Csa4G267450 vs. TrEMBL
Match: A0A0A0KWQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267450 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALW 60
          MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALW
Sbjct: 1  MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALW 60

Query: 61 GFTK 65
          GFTK
Sbjct: 61 GFTK 64

[Close]
BLAST of Csa4G267450 vs. NCBI nr
Match: gi|700198852|gb|KGN54010.1| (hypothetical protein Csa_4G267450 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALW 60
          MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALW
Sbjct: 1  MLDDEELFVDENRLKSLENREKIIEVRLELKDTLWHSRATLHAFAAHCPLCLTMSHMALW 60

Query: 61 GFTK 65
          GFTK
Sbjct: 61 GFTK 64

The following BLAST results are available for this feature:
BLAST of Csa4G267450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWQ8_CUCSA1.7e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G267450 PE=4 SV=1[more]
BLAST of Csa4G267450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198852|gb|KGN54010.1|2.4e-29100.00hypothetical protein Csa_4G267450 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095393cucumber EST collection version 3.0transcribed_cluster
CU098224cucumber EST collection version 3.0transcribed_cluster
CU141403cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G267450.1Csa4G267450.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095393CU095393transcribed_cluster
CU098224CU098224transcribed_cluster
CU141403CU141403transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G267450Melon (DHL92) v3.6.1cumedB279
Csa4G267450Silver-seed gourdcarcuB0535
Csa4G267450Wax gourdcuwgoB390
Csa4G267450Cucumber (Gy14) v1cgycuB220
Csa4G267450Cucurbita maxima (Rimu)cmacuB605
Csa4G267450Cucurbita moschata (Rifu)cmocuB596
Csa4G267450Melon (DHL92) v3.5.1cumeB295
Csa4G267450Cucurbita pepo (Zucchini)cpecuB728
Csa4G267450Bottle gourd (USVL1VR-Ls)culsiB246
Csa4G267450Cucumber (Gy14) v2cgybcuB168
Csa4G267450Cucumber (Gy14) v2cgybcuB174