CU094341 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU094341
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRetrovirus-related Pol polyprotein from type-1 retrotransposable element
LocationChr4 : 10166267 .. 10173598 (-)
Sequence length210
The following sequences are available for this feature:

transcribed_cluster sequence

TAGTTGGTCCATACGGCGGGAGTAACTATGCTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGGCTTGGCAGAATCAGGCGGGGGAAAAGAACGACCCCTGTTGAGCTTGCTCTAGTCCGTACTTTGT
BLAST of CU094341 vs. TrEMBL
Match: J9I0R4_9SPIT (Uncharacterized protein OS=Oxytricha trifallax GN=OXYTRI_13058 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-13
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = -1

Query: 31  LEQAQQGSFFSPA*FCQAPFPWLWFRWIVDRDSGNLVNPFMRVTN*MTRHLATLRE 90
           + QAQQG   SP     +PFPWLW R IVDRDSGNLVNPFMRVTN MTRHLATLRE
Sbjct: 295 VSQAQQG-LLSPL-IVPSPFPWLWVRQIVDRDSGNLVNPFMRVTNQMTRHLATLRE 348

Query: 91  150
           
Sbjct: 355 348

Query: 151 199
           
Sbjct: 415 348

BLAST of CU094341 vs. TrEMBL
Match: J9HKN0_9SPIT (Uncharacterized protein OS=Oxytricha trifallax GN=OXYTRI_14248 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-13
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = -1

Query: 31  LEQAQQGSFFSPA*FCQAPFPWLWFRWIVDRDSGNLVNPFMRVTN*MTRHLATLRE 90
           + QAQQG   SP     +PFPWLW R IVDRDSGNLVNPFMRVTN MTRHLATLRE
Sbjct: 295 VSQAQQG-LLSPL-IVPSPFPWLWVRQIVDRDSGNLVNPFMRVTNQMTRHLATLRE 348

Query: 91  150
           
Sbjct: 355 348

Query: 151 199
           
Sbjct: 415 348

BLAST of CU094341 vs. TrEMBL
Match: A0A068XLN4_HYMMI (Expressed protein OS=Hymenolepis microstoma GN=HmN_000313400 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 40  GSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERGLAESGGGKERPLLSLL*SVLC 99
           GSQMPRHLISDAHEWINEIPTVP+YY AKPQPRER      G  ++ LLSL    LC
Sbjct: 64  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWQNQRG--KKTLLSLTLVRLC 118

Query: 100 159
           
Sbjct: 124 118

Query: 160 211
           
Sbjct: 184 118

BLAST of CU094341 vs. TrEMBL
Match: A0A0S4T633_HYMMI (Hypothetical transcript OS=Hymenolepis microstoma PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 40  GSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERGLAESGGGKERPLLSLL*SVLC 99
           GSQMPRHLISDAHEWINEIPTVP+YY AKPQPRER      G  ++ LLSL    LC
Sbjct: 64  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWQNQRG--KKTLLSLTLVRLC 118

Query: 100 159
           
Sbjct: 124 118

Query: 160 211
           
Sbjct: 184 118

BLAST of CU094341 vs. TrEMBL
Match: A0A0F6AFV1_9GAMM (Uncharacterized protein OS=Pseudoalteromonas luteoviolacea S4054 GN=N479_26495 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-12
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 49  MPRHLISDAHEWINEIPTVPVYYPAKPQPRERGLAESGGGKERPLLSLL*SVLC 108
           MPRHLISDAHEWINEIPTVPVYYPAKPQPRER      G  ++ LLSL    LC
Sbjct: 1   MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRG--KKTLLSLTLVRLC 52

Query: 109 168
           
Sbjct: 61  52

Query: 169 211
           
Sbjct: 121 52

BLAST of CU094341 vs. NCBI nr
Match: gi|403334965|gb|EJY66653.1| (hypothetical protein OXYTRI_13058 [Oxytricha trifallax])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = -1

Query: 31  LEQAQQGSFFSPA*FCQAPFPWLWFRWIVDRDSGNLVNPFMRVTN*MTRHLATLRE 90
           + QAQQG   SP     +PFPWLW R IVDRDSGNLVNPFMRVTN MTRHLATLRE
Sbjct: 295 VSQAQQG-LLSPL-IVPSPFPWLWVRQIVDRDSGNLVNPFMRVTNQMTRHLATLRE 348

Query: 91  150
           
Sbjct: 355 348

Query: 151 199
           
Sbjct: 415 348

BLAST of CU094341 vs. NCBI nr
Match: gi|403333060|gb|EJY65597.1| (hypothetical protein OXYTRI_14248 [Oxytricha trifallax])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = -1

Query: 31  LEQAQQGSFFSPA*FCQAPFPWLWFRWIVDRDSGNLVNPFMRVTN*MTRHLATLRE 90
           + QAQQG   SP     +PFPWLW R IVDRDSGNLVNPFMRVTN MTRHLATLRE
Sbjct: 295 VSQAQQG-LLSPL-IVPSPFPWLWVRQIVDRDSGNLVNPFMRVTNQMTRHLATLRE 348

Query: 91  150
           
Sbjct: 355 348

Query: 151 199
           
Sbjct: 415 348

BLAST of CU094341 vs. NCBI nr
Match: gi|961389434|emb|CUU98466.1| (hypothetical transcript [Hymenolepis microstoma])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-13
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 40  GSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERGLAESGGGKERPLLSLL*SVLC 99
           GSQMPRHLISDAHEWINEIPTVP+YY AKPQPRER      G  ++ LLSL    LC
Sbjct: 64  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWQNQRG--KKTLLSLTLVRLC 118

Query: 100 159
           
Sbjct: 124 118

Query: 160 211
           
Sbjct: 184 118

BLAST of CU094341 vs. NCBI nr
Match: gi|674590285|emb|CDS30781.1| (expressed protein [Hymenolepis microstoma])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-13
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 40  GSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERGLAESGGGKERPLLSLL*SVLC 99
           GSQMPRHLISDAHEWINEIPTVP+YY AKPQPRER      G  ++ LLSL    LC
Sbjct: 64  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWQNQRG--KKTLLSLTLVRLC 118

Query: 100 159
           
Sbjct: 124 118

Query: 160 211
           
Sbjct: 184 118

BLAST of CU094341 vs. NCBI nr
Match: gi|303291422|ref|XP_003064996.1| (predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 49  MPRHLISDAHEWINEIPTVPVYYPAKPQPRERGLAESGGGKERPLLSLL*SVLC 108
           MPRHLISDAHEWINEIPTVPVYYPAKPQPRER      G  ++ LLSL    LC
Sbjct: 1   MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRG--KKTLLSLTLVRLC 52

Query: 109 168
           
Sbjct: 61  52

Query: 169 211
           
Sbjct: 121 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
J9I0R4_9SPIT6.9e-1375.00Uncharacterized protein OS=Oxytricha trifallax GN=OXYTRI_13058 PE=4 SV=1[more]
J9HKN0_9SPIT6.9e-1375.00Uncharacterized protein OS=Oxytricha trifallax GN=OXYTRI_14248 PE=4 SV=1[more]
A0A068XLN4_HYMMI2.0e-1270.18Expressed protein OS=Hymenolepis microstoma GN=HmN_000313400 PE=4 SV=1[more]
A0A0S4T633_HYMMI2.0e-1270.18Hypothetical transcript OS=Hymenolepis microstoma PE=4 SV=1[more]
A0A0F6AFV1_9GAMM5.9e-1272.22Uncharacterized protein OS=Pseudoalteromonas luteoviolacea S4054 GN=N479_26495 P... [more]
Match NameE-valueIdentityDescription
gi|403334965|gb|EJY66653.1|1.5e-1375.00hypothetical protein OXYTRI_13058 [Oxytricha trifallax][more]
gi|403333060|gb|EJY65597.1|1.5e-1375.00hypothetical protein OXYTRI_14248 [Oxytricha trifallax][more]
gi|961389434|emb|CUU98466.1|3.4e-1370.18hypothetical transcript [Hymenolepis microstoma][more]
gi|674590285|emb|CDS30781.1|3.4e-1370.18expressed protein [Hymenolepis microstoma][more]
gi|303291422|ref|XP_003064996.1|1.7e-1272.22predicted protein [Micromonas pusilla CCMP1545][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G243390Csa4G243390gene
Csa4G243400Csa4G243400gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0135797G0135797EST
H0162884H0162884EST