Csa4G243400 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G243400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRRNA intron-encoded homing endonuclease
LocationChr4 : 10169425 .. 10169684 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGTGGTGCATGGTCGTTCTTAGTTGGTGTAGCAATTTGTCTGGTTAATTACGTTAACGAACGAGAACTTAACCTGCTAACCAGCTATGCGGAGGTACCCCTCCGCGGTCAGCTTCTTAGAGGGACTATGGCCTCTTAGGCCAAGGAAGTTTGAGCCAATAACAGGTCTTTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGTCGACTGGCCCGAGTAA

mRNA sequence

ATGGGCGGTGGTGCATGGTCGTTCTTAGTTGGTGTAGCAATTTGTCTGGTTAATTACGTTAACGAACGAGAACTTAACCTGCTAACCAGCTATGCGGAGGTCTTTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGTCGACTGGCCCGAGTAA

Coding sequence (CDS)

ATGGGCGGTGGTGCATGGTCGTTCTTAGTTGGTGTAGCAATTTGTCTGGTTAATTACGTTAACGAACGAGAACTTAACCTGCTAACCAGCTATGCGGAGGTCTTTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGTCGACTGGCCCGAGTAA

Protein sequence

MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDWPE*
Homology
[Close]
BLAST of Csa4G243400 vs. TrEMBL
Match: A0A0A0L086_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243400 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60
          MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW
Sbjct: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60

Query: 61 PE 63
          PE
Sbjct: 61 PE 62

[Close]
BLAST of Csa4G243400 vs. TrEMBL
Match: A0A0L9UDJ6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g102600 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-19
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60
          MGGGAW FLVG AICLVN VNER+L+LL SY EV D LRCSGPHARYT VFNESIAL D 
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVCDALRCSGPHARYTYVFNESIALADR 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of Csa4G243400 vs. TrEMBL
Match: A0A0D2ZQ56_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.9e-16
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60
          MGGGAW FLVG AICLVN VNER+L+LLTSY  V D LRCSGPHARYTDVFNE      W
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSY--VCDALRCSGPHARYTDVFNE---FTPW 56

Query: 61 P 62
          P
Sbjct: 61 P 56

[Close]
BLAST of Csa4G243400 vs. TrEMBL
Match: A0A0A0LPG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-07
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVL 39
          MGGGAW FLVG AICLVN VNER+L+LLTSYAE+  ++
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIV 38

[Close]
BLAST of Csa4G243400 vs. TrEMBL
Match: A0A0V0GJ40_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEV 35
          MGGGAW FLVG AICLVN VNER+L+LLTSYAEV
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV 34

[Close]
BLAST of Csa4G243400 vs. NCBI nr
Match: gi|700198834|gb|KGN53992.1| (hypothetical protein Csa_4G243400 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60
          MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW
Sbjct: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60

Query: 61 PE 63
          PE
Sbjct: 61 PE 62

[Close]
BLAST of Csa4G243400 vs. NCBI nr
Match: gi|920697603|gb|KOM40828.1| (hypothetical protein LR48_Vigan04g102600 [Vigna angularis])

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-19
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVLRCSGPHARYTDVFNESIALVDW 60
          MGGGAW FLVG AICLVN VNER+L+LL SY EV D LRCSGPHARYT VFNESIAL D 
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVCDALRCSGPHARYTYVFNESIALADR 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of Csa4G243400 vs. NCBI nr
Match: gi|700206742|gb|KGN61861.1| (hypothetical protein Csa_2G252100 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-07
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEVFDVL 39
          MGGGAW FLVG AICLVN VNER+L+LLTSYAE+  ++
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIV 38

[Close]
BLAST of Csa4G243400 vs. NCBI nr
Match: gi|984746039|gb|KWW24007.1| (RRNA intron-encoded homing endonuclease [bacterium F082])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 1  MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEV 35
          MGGGAW FLVG AICLVN VNER+L+LLTSYAEV
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV 34

[Close]
BLAST of Csa4G243400 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 1   MGGGAWSFLVGVAICLVNYVNERELNLLTSYAEV 35
           MGGGAW FLVG AICLVN VNER+L+LLTSYAEV
Sbjct: 375 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV 408

The following BLAST results are available for this feature:
BLAST of Csa4G243400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L086_CUCSA1.8e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243400 PE=4 SV=1[more]
A0A0L9UDJ6_PHAAN5.8e-1980.33Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g102600 PE=4 SV=1[more]
A0A0D2ZQ56_BRAOL7.9e-1675.41Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0A0LPG1_CUCSA3.9e-0773.68Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1[more]
A0A0V0GJ40_SOLCH5.1e-0785.29Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
BLAST of Csa4G243400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198834|gb|KGN53992.1|2.6e-28100.00hypothetical protein Csa_4G243400 [Cucumis sativus][more]
gi|920697603|gb|KOM40828.1|8.3e-1980.33hypothetical protein LR48_Vigan04g102600 [Vigna angularis][more]
gi|700206742|gb|KGN61861.1|5.6e-0773.68hypothetical protein Csa_2G252100 [Cucumis sativus][more]
gi|984746039|gb|KWW24007.1|7.3e-0785.29RRNA intron-encoded homing endonuclease [bacterium F082][more]
gi|694380941|ref|XP_009366572.1|7.3e-0785.29PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094341cucumber EST collection version 3.0transcribed_cluster
CU096125cucumber EST collection version 3.0transcribed_cluster
CU139481cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G243400.1Csa4G243400.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU096125CU096125transcribed_cluster
CU094341CU094341transcribed_cluster
CU139481CU139481transcribed_cluster