CU094329 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU094329
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5734734 .. 5735209 (-)
Sequence length	487

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTTTTTTTTAGTATAAAATCGATCAATTCATAAGCTAAAAAGTATCCTTAAAGTAAGGTTCCAAGGCGTGTAGTGCCTCTACATAATGCACAATAGAGGTTCAACACAAAGGGGTAAACAAGGAATTTTATACAGGATTAGCGAGCAGCAGCTACAACTTTTAATTGTTAACTAAGCGGAAATCTACTTCCCTTTCCATCTCCTCATGACGAAGTGTTCATGTTCTAACTACTCACCATTTTTGGCACTTTGTTGCATTCGTGACTCATAGAAGAGTCTCACAGTAGAGAAGATTAAGGAAGGTTCAGCCATTGCACCATTGCCATAGTCCCCACAAGCCAGCCTCTTCGTAACAGGTGGTATAAGAGTTATCCCAAGTTCATCGATTGCAATGAGATGCCGCTCAGTGAAAGGGTTGGTCCACATAAAGGTATTCATTGCAGGCGCAACAAAGAGTGGTTTGTTATAGTCCCATGCTCGCACAAC

Library


Library category	ESTs
fruit (8DPP) library	5
gynoecious flower library	3
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU094329 vs. Swiss-Prot
Match: HAL3A_ARATH (Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.2e-34
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = -1


Query: 251 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 310
           ++RAWDY KPLFVAPAMNT MW NPFTERHL+++DELGITLIPP+ KRLACGDYGNGAMA
Sbjct: 125 IIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMA 184

Query: 311 EPSLIFSTVRLFYESRMQQ 370
           EPSLI+STVRLF+ES+  Q
Sbjct: 185 EPSLIYSTVRLFWESQAHQ 203

Query: 371  430
           
Sbjct: 245  203

Query: 431  488
           
Sbjct: 305  203

[Close]

BLAST of CU094329 vs. Swiss-Prot
Match: HAL3B_ARATH (Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = -1


Query: 251 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 310
           +VRAWDY+KPLFVAPAMNT MW NPFTERHL+ +DELGITLIPP+ K+LACGDYGNGAMA
Sbjct: 117 IVRAWDYSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMA 176

Query: 311 EPSLIFSTVRLFYESRMQQ 370
           EPSLI+STVRLF+ES+ ++
Sbjct: 177 EPSLIYSTVRLFWESQARK 195

Query: 371  430
           
Sbjct: 237  195

Query: 431  488
           
Sbjct: 297  195

[Close]

BLAST of CU094329 vs. Swiss-Prot
Match: HAL3_ORYSJ (Phosphopantothenoylcysteine decarboxylase OS=Oryza sativa subsp. japonica GN=HAL3 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-29
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = -1


Query: 275 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 334
           +VRAWDY+KPLFVAPAMNTFMW NPFT RHL  I+ LGI+L+PP+TKRLACGDYGNGAMA
Sbjct: 126 IVRAWDYSKPLFVAPAMNTFMWNNPFTSRHLETINLLGISLVPPITKRLACGDYGNGAMA 185

Query: 335 EPSLIFSTVRL 394
           EPS+I STVRL
Sbjct: 186 EPSVIDSTVRL 196

Query: 395  454
           
Sbjct: 246  196

Query: 455  488
           
Sbjct: 306  196

[Close]

BLAST of CU094329 vs. Swiss-Prot
Match: COAC_MOUSE (Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = -1


Query: 248 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 307
           V+RAWD NKPL   PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMA
Sbjct: 123 VIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMA 182

Query: 308 EPSLIFSTVR--LFYESRMQQS 367
           E   I + V+  L     +QQS
Sbjct: 183 EVETIVAKVQAVLSQHGSIQQS 204

Query: 368  427
           
Sbjct: 243  204

Query: 428  487
           
Sbjct: 303  204

[Close]

BLAST of CU094329 vs. Swiss-Prot
Match: COAC_HUMAN (Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 7.9e-13
Identity = 40/82 (48.78%), Postives = 46/82 (56.10%), Query Frame = -1


Query: 248 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 307
           V+RAWD +KPL   PAMNT MW +P T + +  +   G   IP V K+L CGD G GAMA
Sbjct: 123 VMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMA 182

Query: 308 EPSLIFSTVR--LFYESRMQQS 367
           E   I   V+  LF  S  QQS
Sbjct: 183 EVGTIVDKVKEVLFQHSGFQQS 204

Query: 368  427
           
Sbjct: 243  204

Query: 428  487
           
Sbjct: 303  204

[Close]

BLAST of CU094329 vs. TrEMBL
Match: A0A0A0LR29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050090 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = -1


Query: 233 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 292
           VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA
Sbjct: 128 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 187

Query: 293 EPSLIFSTVRLFYESRMQQSAKNGE 352
           EPSLIFSTVRLFYESRMQQSAKNGE
Sbjct: 188 EPSLIFSTVRLFYESRMQQSAKNGE 212

Query: 353  412
           
Sbjct: 248  212

Query: 413  472
           
Sbjct: 308  212

Query: 473  488
           
Sbjct: 368  212

[Close]

BLAST of CU094329 vs. TrEMBL
Match: E5GBX2_CUCME (Phosphopentothenoylcysteine decarboxylase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = -1


Query: 233 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 292
           VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA
Sbjct: 128 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 187

Query: 293 EPSLIFSTVRLFYESRMQQSAKNGE 352
           EPSLIFSTVRLFYESRMQQSAKNGE
Sbjct: 188 EPSLIFSTVRLFYESRMQQSAKNGE 212

Query: 353  412
           
Sbjct: 248  212

Query: 413  472
           
Sbjct: 308  212

Query: 473  488
           
Sbjct: 368  212

[Close]

BLAST of CU094329 vs. TrEMBL
Match: W9RGR9_9ROSA (Phosphopantothenoylcysteine decarboxylase OS=Morus notabilis GN=L484_008185 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-34
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = -1


Query: 239 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 298
           +VRAWDY KP+FVAPAMNTFMW NPFTERHL++IDELGI+LIPPV+KRLACGDYGNGAMA
Sbjct: 127 IVRAWDYTKPIFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMA 186

Query: 299 EPSLIFSTVRLFYESRMQQSAKN 358
           EPSLI+STVRLF ESR QQ  KN
Sbjct: 187 EPSLIYSTVRLFVESRNQQGGKN 209

Query: 359  418
           
Sbjct: 247  209

Query: 419  478
           
Sbjct: 307  209

Query: 479  488
           
Sbjct: 367  209

[Close]

BLAST of CU094329 vs. TrEMBL
Match: A0A0V0HMX8_SOLCH (Putative phosphopantothenoylcysteine decarboxylase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-34
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = -1


Query: 239 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 298
           +VRAWDYNKPLFVAPAMNT MW NPFTERHL+ IDELGI+LIPPV+KRLACGDYGNGAMA
Sbjct: 118 IVRAWDYNKPLFVAPAMNTLMWNNPFTERHLMVIDELGISLIPPVSKRLACGDYGNGAMA 177

Query: 299 EPSLIFSTVRLFYESRMQQSAKN 358
           EPSLI+STVRLFYESR Q    N
Sbjct: 178 EPSLIYSTVRLFYESRSQSGGIN 200

Query: 359  418
           
Sbjct: 238  200

Query: 419  478
           
Sbjct: 298  200

Query: 479  488
           
Sbjct: 358  200

[Close]

BLAST of CU094329 vs. TrEMBL
Match: C6SZ50_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G020900 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-34
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = -1


Query: 233 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 292
           +VRAWDY+KP FVAPAMNTFMW NPFTERHLI+IDELGI+LIPPVTKRLACGDYGNGAMA
Sbjct: 128 IVRAWDYSKPFFVAPAMNTFMWNNPFTERHLISIDELGISLIPPVTKRLACGDYGNGAMA 187

Query: 293 EPSLIFSTVRLFYESRMQQSAKNGE 352
           EPS I+STVRLFYES+ QQ   NG+
Sbjct: 188 EPSTIYSTVRLFYESKAQQG--NGD 210

Query: 353  412
           
Sbjct: 248  210

Query: 413  472
           
Sbjct: 308  210

Query: 473  488
           
Sbjct: 368  210

[Close]

BLAST of CU094329 vs. NCBI nr
Match: gi|449469602|ref|XP_004152508.1| (PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 9.6e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = -1


Query: 233 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 292
           VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA
Sbjct: 128 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 187

Query: 293 EPSLIFSTVRLFYESRMQQSAKNGE 352
           EPSLIFSTVRLFYESRMQQSAKNGE
Sbjct: 188 EPSLIFSTVRLFYESRMQQSAKNGE 212

Query: 353  412
           
Sbjct: 248  212

Query: 413  472
           
Sbjct: 308  212

Query: 473  488
           
Sbjct: 368  212

[Close]

BLAST of CU094329 vs. NCBI nr
Match: gi|703119739|ref|XP_010101940.1| (Phosphopantothenoylcysteine decarboxylase [Morus notabilis])

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = -1


Query: 239 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 298
           +VRAWDY KP+FVAPAMNTFMW NPFTERHL++IDELGI+LIPPV+KRLACGDYGNGAMA
Sbjct: 127 IVRAWDYTKPIFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMA 186

Query: 299 EPSLIFSTVRLFYESRMQQSAKN 358
           EPSLI+STVRLF ESR QQ  KN
Sbjct: 187 EPSLIYSTVRLFVESRNQQGGKN 209

Query: 359  418
           
Sbjct: 247  209

Query: 419  478
           
Sbjct: 307  209

Query: 479  488
           
Sbjct: 367  209

[Close]

BLAST of CU094329 vs. NCBI nr
Match: gi|747046609|ref|XP_011100508.1| (PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Sesamum indicum])

HSP 1 Score: 156.4 bits (394), Expect = 4.3e-35
Identity = 69/83 (83.13%), Postives = 78/83 (93.98%), Query Frame = -1


Query: 239 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 298
           +VRAWDY KP+FVAPAMNTFMWTNPFTERHL+ ID+LGI+LIPPVTKRLACGDYGNGAMA
Sbjct: 128 IVRAWDYTKPMFVAPAMNTFMWTNPFTERHLMVIDDLGISLIPPVTKRLACGDYGNGAMA 187

Query: 299 EPSLIFSTVRLFYESRMQQSAKN 358
           EPSLI+STVRLF+E+R Q S+ N
Sbjct: 188 EPSLIYSTVRLFFENREQSSSGN 210

Query: 359  418
           
Sbjct: 248  210

Query: 419  478
           
Sbjct: 308  210

Query: 479  488
           
Sbjct: 368  210

[Close]

BLAST of CU094329 vs. NCBI nr
Match: gi|922334014|ref|XP_013444998.1| (phosphopantothenoylcysteine decarboxylase [Medicago truncatula])

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = -1


Query: 233 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 292
           +VRAWDY+KP FVAPAMNTFMW NPFTERHLI+IDELGI+LIPPVTKRLACGDYGNGAMA
Sbjct: 116 IVRAWDYSKPFFVAPAMNTFMWNNPFTERHLISIDELGISLIPPVTKRLACGDYGNGAMA 175

Query: 293 EPSLIFSTVRLFYESRMQQSAKNGE 352
           EPS I+STVRLFYES+ QQ   NG+
Sbjct: 176 EPSTIYSTVRLFYESKAQQG--NGD 198

Query: 353  412
           
Sbjct: 236  198

Query: 413  472
           
Sbjct: 296  198

Query: 473  488
           
Sbjct: 356  198

[Close]

BLAST of CU094329 vs. NCBI nr
Match: gi|460400179|ref|XP_004245613.1| (PREDICTED: phosphopantothenoylcysteine decarboxylase [Solanum lycopersicum])

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = -1


Query: 239 VVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMA 298
           +VRAWDYNKPLFVAPAMNT MW NPFTERHL+ IDELGI+LIPPV+KRLACGDYGNGAMA
Sbjct: 122 IVRAWDYNKPLFVAPAMNTLMWNNPFTERHLMVIDELGISLIPPVSKRLACGDYGNGAMA 181

Query: 299 EPSLIFSTVRLFYESRMQQSAKN 358
           EPSLI+STVRLFYESR Q    N
Sbjct: 182 EPSLIYSTVRLFYESRSQSGGIN 204

Query: 359  418
           
Sbjct: 242  204

Query: 419  478
           
Sbjct: 302  204

Query: 479  488
           
Sbjct: 362  204

The following BLAST results are available for this feature:

BLAST of CU094329 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HAL3A_ARATH	6.2e-34	81.01	Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 ...	[more]
HAL3B_ARATH	2.4e-33	79.75	Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HA...	[more]
HAL3_ORYSJ	7.9e-29	81.69	Phosphopantothenoylcysteine decarboxylase OS=Oryza sativa subsp. japonica GN=HAL...	[more]
COAC_MOUSE	4.6e-13	47.56	Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=1 SV=1	[more]
COAC_HUMAN	7.9e-13	48.78	Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2	[more]

BLAST of CU094329 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR29_CUCSA	7.4e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050090 PE=4 SV=1	[more]
E5GBX2_CUCME	7.4e-42	100.00	Phosphopentothenoylcysteine decarboxylase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RGR9_9ROSA	2.5e-34	84.34	Phosphopantothenoylcysteine decarboxylase OS=Morus notabilis GN=L484_008185 PE=4...	[more]
A0A0V0HMX8_SOLCH	5.7e-34	84.34	Putative phosphopantothenoylcysteine decarboxylase-like OS=Solanum chacoense PE=...	[more]
C6SZ50_SOYBN	5.7e-34	83.53	Uncharacterized protein OS=Glycine max GN=GLYMA_03G020900 PE=2 SV=1	[more]

BLAST of CU094329 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469602\|ref\|XP_004152508.1\|	9.6e-43	100.00	PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Cucumis sativus]	[more]
gi\|703119739\|ref\|XP_010101940.1\|	3.3e-35	84.34	Phosphopantothenoylcysteine decarboxylase [Morus notabilis]	[more]
gi\|747046609\|ref\|XP_011100508.1\|	4.3e-35	83.13	PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Sesamum indicum]	[more]
gi\|922334014\|ref\|XP_013444998.1\|	7.3e-35	83.53	phosphopantothenoylcysteine decarboxylase [Medicago truncatula]	[more]
gi\|460400179\|ref\|XP_004245613.1\|	7.3e-35	84.34	PREDICTED: phosphopantothenoylcysteine decarboxylase [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003382	Flavoprotein

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G050090	Csa1G050090	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KN6VB	FKNP3UI02KN6VB	EST
FKNP3UI02KY8GJ	FKNP3UI02KY8GJ	EST
FKNP3UI02LD5TT	FKNP3UI02LD5TT	EST
FKNP3UI02O3OTD	FKNP3UI02O3OTD	EST
FKNP3UI02OB6AQ	FKNP3UI02OB6AQ	EST
G0125310	G0125310	EST
G0160798	G0160798	EST
G0185100	G0185100	EST
H0161390	H0161390	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003382	Flavoprotein	GENE3D	G3DSA:3.40.50.1950		coord: 1..76 score: 7.5
IPR003382	Flavoprotein	unknown	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	coord: 2..72 score: 1.07
None	No IPR available	PANTHER	PTHR14359	HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY	coord: 1..85 score: 4.5