CU094234 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU094234
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTrafficking protein particle complex subunit 2
LocationChr2 : 15314069 .. 15314812 (+)
Sequence length480
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGACCTTCCGAATTCAAATCAGAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTGGTGGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAATGTCGAGAGGGTTTGTCAAGCACACTGTGCTGGAAATTATGTCAAATTTCATTAATGCACTCACTCGTAAAACTCAACTCTAAATTAGTGGAAGTTTTATCTTTGAATCTTTTGCATCTGTACCCCACCCCCCACCATTGCATTACTTATATATTGACTGATAGAATCTGCAATCAAACCTTTTCATTATACGAGACACATGTTTTACCC
Homology
[Close]
BLAST of CU094234 vs. Swiss-Prot
Match: TPPC2_DROME (Probable trafficking protein particle complex subunit 2 OS=Drosophila melanogaster GN=Trs20 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 2 

Query: 38  TTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLK 97
           +T  F+IV +N+ PIYE E   V   +++ED   L QFI HA+LD+V +  W T+ M LK
Sbjct: 2   STYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLK 61

Query: 98  AVDRFNDWW 157
           ++DRFN W+
Sbjct: 62  SIDRFNQWF 70

Query: 158  217
           
Sbjct: 122  70

Query: 218  236
           
Sbjct: 182  70

[Close]
BLAST of CU094234 vs. Swiss-Prot
Match: TPPC2_NEMVE (Probable trafficking protein particle complex subunit 2 OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-10
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 2 

Query: 50  FIIVSRNNIPIYEAEVGSAVKRE--DSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRF 109
           F IV   + P+YE E    +K +  D   L+QFI+HA+LD+V +  W T+ M+LK+VD+F
Sbjct: 7   FAIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYLKSVDKF 66

Query: 110 NDWWCLYM*PPV 169
           N+W+     PP+
Sbjct: 67  NEWFVSAFDPPL 78

Query: 170  229
           
Sbjct: 127  78

Query: 230  260
           
Sbjct: 187  78

[Close]
BLAST of CU094234 vs. Swiss-Prot
Match: TPC2B_HUMAN (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 91
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 92  LKAVDRFNDWW 151
           LK VD+FN+W+
Sbjct: 61  LKTVDKFNEWF 71

Query: 152  211
           
Sbjct: 121  71

Query: 212  236
           
Sbjct: 181  71

[Close]
BLAST of CU094234 vs. Swiss-Prot
Match: TPPC2_PONAB (Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 91
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 92  LKAVDRFNDWW 151
           LK VD+FN+W+
Sbjct: 61  LKTVDKFNEWF 71

Query: 152  211
           
Sbjct: 121  71

Query: 212  236
           
Sbjct: 181  71

[Close]
BLAST of CU094234 vs. Swiss-Prot
Match: TPPC2_PIG (Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 91
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 92  LKAVDRFNDWW 151
           LK VD+FN+W+
Sbjct: 61  LKTVDKFNEWF 71

Query: 152  211
           
Sbjct: 121  71

Query: 212  236
           
Sbjct: 181  71

[Close]
BLAST of CU094234 vs. TrEMBL
Match: A0A0A0LQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338800 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           VDRFND
Sbjct: 61  VDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. TrEMBL
Match: A0A067F9D4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           +DRFND
Sbjct: 61  IDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. TrEMBL
Match: A0A067FKI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           +DRFND
Sbjct: 61  IDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. TrEMBL
Match: A0A067FL79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           +DRFND
Sbjct: 61  IDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. TrEMBL
Match: A0A061EJF7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-26
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           +DRFND
Sbjct: 61  IDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. NCBI nr
Match: gi|449459192|ref|XP_004147330.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           VDRFND
Sbjct: 61  VDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. NCBI nr
Match: gi|778670342|ref|XP_011649448.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           VDRFND
Sbjct: 61  VDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. NCBI nr
Match: gi|700207117|gb|KGN62236.1| (hypothetical protein Csa_2G338800 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           VDRFND
Sbjct: 61  VDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. NCBI nr
Match: gi|659121801|ref|XP_008460820.1| (PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 8.5e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           VDRFND
Sbjct: 61  VDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

[Close]
BLAST of CU094234 vs. NCBI nr
Match: gi|641845078|gb|KDO63967.1| (hypothetical protein CISIN_1g032720mg [Citrus sinensis])

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-27
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 2 

Query: 32  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 91
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 92  VDRFND 151
           +DRFND
Sbjct: 61  IDRFND 66

Query: 152  211
           
Sbjct: 121  66

Query: 212  230
           
Sbjct: 181  66

The following BLAST results are available for this feature:
BLAST of CU094234 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPPC2_DROME2.8e-1046.38Probable trafficking protein particle complex subunit 2 OS=Drosophila melanogast... [more]
TPPC2_NEMVE8.0e-1041.67Probable trafficking protein particle complex subunit 2 OS=Nematostella vectensi... [more]
TPC2B_HUMAN3.0e-0939.44Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1... [more]
TPPC2_PONAB3.0e-0939.44Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 S... [more]
TPPC2_PIG3.0e-0939.44Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=... [more]
BLAST of CU094234 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQF1_CUCSA3.5e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338800 PE=4 SV=1[more]
A0A067F9D4_CITSI1.1e-2693.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1[more]
A0A067FKI3_CITSI1.1e-2693.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1[more]
A0A067FL79_CITSI1.1e-2693.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1[more]
A0A061EJF7_THECC2.5e-2692.42SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 S... [more]
BLAST of CU094234 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459192|ref|XP_004147330.1|2.2e-28100.00PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus... [more]
gi|778670342|ref|XP_011649448.1|2.2e-28100.00PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus... [more]
gi|700207117|gb|KGN62236.1|2.2e-28100.00hypothetical protein Csa_2G338800 [Cucumis sativus][more]
gi|659121801|ref|XP_008460820.1|8.5e-2898.48PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo][more]
gi|641845078|gb|KDO63967.1|7.2e-2793.94hypothetical protein CISIN_1g032720mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR006722Sedlin
IPR011012Longin-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006810transport
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G338800Csa2G338800gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LDT1DFKNP3UI02LDT1DEST
FKNP3UI02LS4I5FKNP3UI02LS4I5EST
FKNP3UI02M3PC4FKNP3UI02M3PC4EST
FKNP3UI02OKP41FKNP3UI02OKP41EST
G0001802G0001802EST
G0047847G0047847EST
G0089350G0089350EST
G0154329G0154329EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403MBP-1 INTERACTING PROTEIN-2Acoord: 1..66
score: 1.3
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 9..67
score: 7.9
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 1..67
score: 1.92
NoneNo IPR availableGENE3DG3DSA:3.30.450.70coord: 3..67
score: 4.0
NoneNo IPR availablePANTHERPTHR12403:SF14SUBFAMILY NOT NAMEDcoord: 1..66
score: 1.3