CU094003 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU094003
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
LocationChr1 : 11056375 .. 11083521 (-)
Sequence length386
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATAGGTTTTCTATTCCGTTGATTTTATTCTTCTTCCAGCTACTGTTCTTTCATTAACAAAGGAAGACAAACTGAAGGTTAGCATGAATACTGTGCTTGGTTCAGCTGCACCTCCTTTAACTGTGAAGATAGTTAAAGCTTTTCTATCTGGTTCAAAAGACACTTCCATTATCAGCAGCCAGGAACTCAAGTTTGATCCTCTGTCTGGTCTACATATCTTGGATGCTTTCCCCAAGACCTTTGATGTTGGAAACTATGTCTTCGTGTTTGAGGTTGTTCTTCATGATTCAGAGCATATGGATAAATATGCCACTGGTGGGAAGATTCAAGTTCCAATATATATCTCAGGAGTTTGTCAAAAATTGAGAATGCAGAGATTGCAGTTCT
Homology
[Close]
BLAST of CU094003 vs. Swiss-Prot
Match: RPN2_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-25
Identity = 60/114 (52.63%), Postives = 81/114 (71.05%), Query Frame = 2 

Query: 11  YSVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 70
           +SV  IL LP+TV+SLTK++ LKV ++TVLGS AP L+VK+ +A  S S D+S+I++QEL
Sbjct: 308 FSVPLILSLPSTVISLTKKEPLKVKVSTVLGSKAPALSVKLTQALSSKSVDSSVINNQEL 367

Query: 71  KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISG 130
           KFD  S  + LD+FPK FD+G Y FVF++VL +S H   Y T  + +VPI  +G
Sbjct: 368 KFDADSATYFLDSFPKNFDIGKYTFVFKIVLDESAHEKVYITEAQTKVPIAATG 421

Query: 131  190
           
Sbjct: 428  421

Query: 191  250
           
Sbjct: 488  421

Query: 251  310
           
Sbjct: 548  421

Query: 311  350
           
Sbjct: 608  421

[Close]
BLAST of CU094003 vs. Swiss-Prot
Match: RPN2_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Oryza sativa subsp. japonica GN=RPN2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 2 

Query: 32  LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELKFDPLSGL 91
           LP+ V SLT +D+LKV + TV GSAAPPL V +V+   S SK  +   ++EL+FD  + +
Sbjct: 323 LPSKVFSLTSKDQLKVEVTTVFGSAAPPLRVNLVQVLGSDSKVITT-ETKELQFDLDNNV 382

Query: 92  HILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 151
           H LD  P   DVG Y  VFE+ L + EH   YATGG     I+++G+
Sbjct: 383 HYLDIAPLKIDVGKYSLVFEISLQEQEHETIYATGGTNTEAIFVTGL 428

Query: 152  211
           
Sbjct: 443  428

Query: 212  271
           
Sbjct: 503  428

Query: 272  331
           
Sbjct: 563  428

Query: 332  353
           
Sbjct: 623  428

[Close]
BLAST of CU094003 vs. TrEMBL
Match: A0A0A0LYL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181440 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-52
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 2 

Query: 11  YSVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 70
           +S+  IL LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL
Sbjct: 398 FSIPLILSLPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 457

Query: 71  KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 130
           KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV
Sbjct: 458 KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 512

Query: 131  190
           
Sbjct: 518  512

Query: 191  250
           
Sbjct: 578  512

Query: 251  310
           
Sbjct: 638  512

Query: 311  353
           
Sbjct: 698  512

[Close]
BLAST of CU094003 vs. TrEMBL
Match: B9GRP4_POPTR (Ribophorin 2 family protein OS=Populus trichocarpa GN=POPTR_0002s03790g PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           S+  IL LPATVLSLTK+D LKV +NTVLGS APPLTVK+V  F SGSKDTS+I  QELK
Sbjct: 313 SIPLILSLPATVLSLTKKDALKVKVNTVLGSNAPPLTVKLVGVFRSGSKDTSLIEGQELK 372

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 133
           F+P S ++ LDA PK+ DVG Y FVFE+VLHD +H++ YATGG+ ++PI+++GV
Sbjct: 373 FNPESTVYALDALPKSIDVGKYTFVFEMVLHDPDHLNLYATGGQTRIPIFVTGV 426

Query: 134  193
           
Sbjct: 433  426

Query: 194  253
           
Sbjct: 493  426

Query: 254  313
           
Sbjct: 553  426

Query: 314  353
           
Sbjct: 613  426

[Close]
BLAST of CU094003 vs. TrEMBL
Match: B9H8P2_POPTR (Ribophorin 2 family protein OS=Populus trichocarpa GN=POPTR_0005s24790g PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-33
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           S+  IL LPATVLSLTK+D LKV +NTVLGS APPLTV +++ F SGSKDT +  SQELK
Sbjct: 313 SIPLILSLPATVLSLTKKDALKVKVNTVLGSNAPPLTVNLLRVFRSGSKDTLLTESQELK 372

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGVCQ 133
           FDP + ++ LDA PK+ DVG Y FVFE VLHDS+H + YATGG+ ++PI+++G+ +
Sbjct: 373 FDPANAVYTLDALPKSVDVGKYTFVFETVLHDSDHKNLYATGGQTRIPIFVTGIIE 428

Query: 134  193
           
Sbjct: 433  428

Query: 194  253
           
Sbjct: 493  428

Query: 254  313
           
Sbjct: 553  428

Query: 314  359
           
Sbjct: 613  428

[Close]
BLAST of CU094003 vs. TrEMBL
Match: A0A0B2PDZ9_GLYSO (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Glycine soja GN=glysoja_026451 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-32
Identity = 72/116 (62.07%), Postives = 92/116 (79.31%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           S+  IL LP TV SLTK+ +LKV +NTVLGSAAPPLTVK+V+AF +G+KD++II S+EL+
Sbjct: 307 SIPLILSLPETVYSLTKKGQLKVKVNTVLGSAAPPLTVKLVRAFSTGAKDSAIIDSKELR 366

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGVCQ 133
           +D  SG H+LDA PK  DVG YVFVFE+VLHD      YATGG+I VPIY++G+ +
Sbjct: 367 YDQESGFHVLDALPKNVDVGTYVFVFEIVLHDFGSEKVYATGGQIHVPIYVTGIIE 422

Query: 134  193
           
Sbjct: 427  422

Query: 194  253
           
Sbjct: 487  422

Query: 254  313
           
Sbjct: 547  422

Query: 314  359
           
Sbjct: 607  422

[Close]
BLAST of CU094003 vs. TrEMBL
Match: D7U318_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03640 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.5e-32
Identity = 74/114 (64.91%), Postives = 90/114 (78.95%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           S+  IL LPATVLSLTK D+LKV +NTVLGS APPLTVK+++AF S SK+  II +QELK
Sbjct: 374 SIPLILSLPATVLSLTKNDQLKVRVNTVLGSNAPPLTVKLLQAFSSSSKNAFIIENQELK 433

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 133
           FDP + +H LDA P+  DVGNYVFVFE++LHD EH   YATG + +VPI I+GV
Sbjct: 434 FDPENAVHFLDALPENVDVGNYVFVFEILLHDPEHEKIYATGSRTRVPIIITGV 487

Query: 134  193
           
Sbjct: 494  487

Query: 194  253
           
Sbjct: 554  487

Query: 254  313
           
Sbjct: 614  487

Query: 314  353
           
Sbjct: 674  487

[Close]
BLAST of CU094003 vs. NCBI nr
Match: gi|778659736|ref|XP_011654943.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-52
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 2 

Query: 11  YSVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 70
           +S+  IL LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL
Sbjct: 308 FSIPLILSLPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 367

Query: 71  KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 130
           KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV
Sbjct: 368 KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 422

Query: 131  190
           
Sbjct: 428  422

Query: 191  250
           
Sbjct: 488  422

Query: 251  310
           
Sbjct: 548  422

Query: 311  353
           
Sbjct: 608  422

[Close]
BLAST of CU094003 vs. NCBI nr
Match: gi|700209935|gb|KGN65031.1| (hypothetical protein Csa_1G181440 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-52
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 2 

Query: 11  YSVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 70
           +S+  IL LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL
Sbjct: 398 FSIPLILSLPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQEL 457

Query: 71  KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 130
           KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV
Sbjct: 458 KFDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 512

Query: 131  190
           
Sbjct: 518  512

Query: 191  250
           
Sbjct: 578  512

Query: 251  310
           
Sbjct: 638  512

Query: 311  353
           
Sbjct: 698  512

[Close]
BLAST of CU094003 vs. NCBI nr
Match: gi|659127251|ref|XP_008463606.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-49
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           S+  IL LPATVLSLTKEDKLKVSMNTVLG  APPLTVKIVKAFLSGSKDTSII SQELK
Sbjct: 309 SIPLILSLPATVLSLTKEDKLKVSMNTVLGEVAPPLTVKIVKAFLSGSKDTSIIGSQELK 368

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 133
           FDP++GLHILDAFPKTFDVGNYVFVFEVVLHDSEHMD YATGGKIQVPIYISGV
Sbjct: 369 FDPVTGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDIYATGGKIQVPIYISGV 422

Query: 134  193
           
Sbjct: 429  422

Query: 194  253
           
Sbjct: 489  422

Query: 254  313
           
Sbjct: 549  422

Query: 314  353
           
Sbjct: 609  422

[Close]
BLAST of CU094003 vs. NCBI nr
Match: gi|470107243|ref|XP_004289958.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-33
Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           SV  IL LP TVLSLTK+D+LKV ++TVLGS+APPLTV++V+AF SGSKD S+ISSQELK
Sbjct: 303 SVPLILSLPTTVLSLTKKDQLKVKVSTVLGSSAPPLTVRLVRAFSSGSKDASVISSQELK 362

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 133
           FD  SG H+LD  PK+ DVG+Y+FVFEV+LH+SEH   Y TGG  QV ++++GV
Sbjct: 363 FDQESGYHVLDVLPKSVDVGSYIFVFEVLLHNSEHETVYTTGGLAQVGVFVTGV 416

Query: 134  193
           
Sbjct: 423  416

Query: 194  253
           
Sbjct: 483  416

Query: 254  313
           
Sbjct: 543  416

Query: 314  353
           
Sbjct: 603  416

[Close]
BLAST of CU094003 vs. NCBI nr
Match: gi|224062133|ref|XP_002300771.1| (ribophorin 2 family protein [Populus trichocarpa])

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = 2 

Query: 14  SVDFIL-LPATVLSLTKEDKLKVSMNTVLGSAAPPLTVKIVKAFLSGSKDTSIISSQELK 73
           S+  IL LPATVLSLTK+D LKV +NTVLGS APPLTVK+V  F SGSKDTS+I  QELK
Sbjct: 313 SIPLILSLPATVLSLTKKDALKVKVNTVLGSNAPPLTVKLVGVFRSGSKDTSLIEGQELK 372

Query: 74  FDPLSGLHILDAFPKTFDVGNYVFVFEVVLHDSEHMDKYATGGKIQVPIYISGV 133
           F+P S ++ LDA PK+ DVG Y FVFE+VLHD +H++ YATGG+ ++PI+++GV
Sbjct: 373 FNPESTVYALDALPKSIDVGKYTFVFEMVLHDPDHLNLYATGGQTRIPIFVTGV 426

Query: 134  193
           
Sbjct: 433  426

Query: 194  253
           
Sbjct: 493  426

Query: 254  313
           
Sbjct: 553  426

Query: 314  353
           
Sbjct: 613  426

The following BLAST results are available for this feature:
BLAST of CU094003 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPN2_ARATH1.9e-2552.63Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arab... [more]
RPN2_ORYSJ1.9e-1745.79Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Oryz... [more]
BLAST of CU094003 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYL0_CUCSA2.1e-5295.65Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181440 PE=4 SV=1[more]
B9GRP4_POPTR2.2e-3364.91Ribophorin 2 family protein OS=Populus trichocarpa GN=POPTR_0002s03790g PE=4 SV=... [more]
B9H8P2_POPTR8.4e-3361.21Ribophorin 2 family protein OS=Populus trichocarpa GN=POPTR_0005s24790g PE=4 SV=... [more]
A0A0B2PDZ9_GLYSO4.2e-3262.07Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Glyc... [more]
D7U318_VITVI5.5e-3264.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03640 PE=4 SV=... [more]
BLAST of CU094003 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659736|ref|XP_011654943.1|3.1e-5295.65PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni... [more]
gi|700209935|gb|KGN65031.1|3.1e-5295.65hypothetical protein Csa_1G181440 [Cucumis sativus][more]
gi|659127251|ref|XP_008463606.1|7.1e-4991.23PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni... [more]
gi|470107243|ref|XP_004289958.1|1.4e-3365.79PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni... [more]
gi|224062133|ref|XP_002300771.1|3.2e-3364.91ribophorin 2 family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR008814Swp1
Vocabulary: Biological Process
TermDefinition
GO:0006487protein N-linked glycosylation
Vocabulary: Cellular Component
TermDefinition
GO:0008250oligosaccharyltransferase complex
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006487 protein N-linked glycosylation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0008250 oligosaccharyltransferase complex
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G181440Csa1G181440gene
Csa1G181450Csa1G181450gene
Csa1G181470Csa1G181470gene
Csa1G181460Csa1G181460gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0080891G0080891EST
G0091181G0091181EST
H0182245H0182245EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008814Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1PANTHERPTHR12640:SF0DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2coord: 2..85
score: 1.7
IPR008814Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1PFAMPF05817Ribophorin_IIcoord: 2..89
score: 3.3
NoneNo IPR availablePANTHERPTHR12640RIBOPHORIN IIcoord: 2..85
score: 1.7