CU093738 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU093738
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Polypyrimidine tract-binding protein like 3
Location	Chr6 : 1984893 .. 1985421 (+)
Sequence length	528

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCTGACACTCATGAATATGCTAACTCAAACCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCGACAAAAATGATCCACATATCATCTCTATCTCAGGAAGTGACTGAAGAAGAGATAGTTAGTCTCCTTGAGGAACATGGGCCGATTGTCAACAGCAAGCTCTTTGAGATGAATGGTAAGAAGCAGGCACTCATCATGTTTGACACTGAGGAGCAGGCGACTGAAGCTCTTGTTTGCAAGCATGCTAGTTTGCTTAGTGGGTCGATCATTCGCATTTCATTTTCCCAGTTGCAGACTTTATGAGGTTAACAACGGCATTAAACAAGTAAGAAGTGATGGATTCTTAATGCTTAATTGGGGTTGAGGATTCATAATTTACGAGGATTTAAAAAAAATGGAGATGATGGCGCATACTGTCTTAATTCTTGTAACAGTTAATTTGTGTTTGGATTTTTTTCGTGGGATTGTACTTCTGCTTTGTTGTTGTCTCAATTCTTCTCTTCTCAT

Library


Library category	ESTs
fruit (8DPP) library	7
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU093738 vs. Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.9e-43
Identity = 79/106 (74.53%), Postives = 95/106 (89.62%), Query Frame = 1


Query: 4   DTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKL 63
           D+H+Y NSNLNRFNRNAAKNYRYCCSPTKMIH+S+L Q+VTEEE+++ ++EHG +VN+K+
Sbjct: 327 DSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKV 386

Query: 64  FEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 123
           FEMNGKKQAL+ F+ EE+A EALVCKHA+ L GSIIRISFSQLQT+
Sbjct: 387 FEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432

Query: 124  183
           
Sbjct: 447  432

Query: 184  243
           
Sbjct: 507  432

Query: 244  303
           
Sbjct: 567  432

Query: 304  322
           
Sbjct: 627  432

[Close]

BLAST of CU093738 vs. Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 1


Query: 7   THEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLF 66
           T +Y NS L+RF +  +KN++    P+  +H+S++   V+EE++  L   +G +V    F
Sbjct: 427 TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 486

Query: 67  EMNGKKQALIMFDTEEQATEALVCKH-ASLLSGSIIRISFSQ 126
               +K ALI   + E+A +AL+  H   L     +R+SFS+
Sbjct: 487 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528

Query: 127  186
           
Sbjct: 547  528

Query: 187  246
           
Sbjct: 607  528

Query: 247  306
           
Sbjct: 667  528

Query: 307  310
           
Sbjct: 727  528

HSP 2 Score: 44.3 bits (103), Expect = 1.6e-03
Identity = 36/108 (33.33%), Postives = 54/108 (50.00%), Query Frame = 1


Query: 19  ANSNLNRFNRNAAKNY----RYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLF 78
           ++++ +  N N +K +    R    P+++IHI  L  +VTE E++SL    G + N  L 
Sbjct: 32  SSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 91

Query: 79  EMNGKKQALIMFDTEEQATEALVCKHAS---LLSGSIIRISFSQLQTL 138
            + GK QA I  +TEE A   +V  + S   +L G  I I FS  + L
Sbjct: 92  MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 136

Query: 139  198
           
Sbjct: 152  136

Query: 199  258
           
Sbjct: 212  136

Query: 259  318
           
Sbjct: 272  136

Query: 319  322
           
Sbjct: 332  136

[Close]

BLAST of CU093738 vs. Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-09
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 1


Query: 7   THEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLF 66
           T +Y NS L+RF +  +KN++    P+  +H+S++   ++EE++  L   +G IV    F
Sbjct: 453 TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKF 512

Query: 67  EMNGKKQALIMFDTEEQATEALVCKH-ASLLSGSIIRISFSQ 126
               +K ALI   + E+A +AL+  H   L     +R+SFS+
Sbjct: 513 FQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554

Query: 127  186
           
Sbjct: 573  554

Query: 187  246
           
Sbjct: 633  554

Query: 247  306
           
Sbjct: 693  554

Query: 307  310
           
Sbjct: 753  554

HSP 2 Score: 45.4 bits (106), Expect = 7.3e-04
Identity = 36/108 (33.33%), Postives = 54/108 (50.00%), Query Frame = 1


Query: 19  ANSNLNRFNRNAAKNY----RYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLF 78
           ++++ +  N N +K +    R    P+++IHI  L  +VTE E++SL    G + N  L 
Sbjct: 32  SSNSASTANGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LL 91

Query: 79  EMNGKKQALIMFDTEEQATEALVCKHAS---LLSGSIIRISFSQLQTL 138
            + GK QA I  +TEE A   +V  + S   +L G  I I FS  + L
Sbjct: 92  MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 136

Query: 139  198
           
Sbjct: 152  136

Query: 199  258
           
Sbjct: 212  136

Query: 259  318
           
Sbjct: 272  136

Query: 319  322
           
Sbjct: 332  136

[Close]

BLAST of CU093738 vs. Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-08
Identity = 32/102 (31.37%), Postives = 55/102 (53.92%), Query Frame = 1


Query: 7   THEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLF 66
           T +Y NS L+RF +  +KN++    P+  +H+S++   ++E+++  L   +G IV    F
Sbjct: 427 TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKF 486

Query: 67  EMNGKKQALIMFDTEEQATEALVCKH-ASLLSGSIIRISFSQ 126
               +K ALI   + E+A +AL+  H   L     +R+SFS+
Sbjct: 487 FQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528

Query: 127  186
           
Sbjct: 547  528

Query: 187  246
           
Sbjct: 607  528

Query: 247  306
           
Sbjct: 667  528

Query: 307  310
           
Sbjct: 727  528

HSP 2 Score: 43.5 bits (101), Expect = 2.8e-03
Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 82  PTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQATEALVCK 141
           P+++IHI  L  +VTE E++SL    G + N  L  + GK QA I   TEE A   +V  
Sbjct: 57  PSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMVNY 116

Query: 142 HAS---LLSGSIIRISFSQLQTL 201
           + S   +L G  I I FS  + L
Sbjct: 117 YTSVTPVLRGQPIYIQFSNHKEL 136

Query: 202  261
           
Sbjct: 177  136

Query: 262  321
           
Sbjct: 237  136

[Close]

BLAST of CU093738 vs. TrEMBL
Match: A0A0A0KAL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017000 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK
Sbjct: 353 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 412

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL
Sbjct: 413 LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 459

Query: 121  180
           
Sbjct: 473  459

Query: 181  240
           
Sbjct: 533  459

Query: 241  300
           
Sbjct: 593  459

Query: 301  322
           
Sbjct: 653  459

[Close]

BLAST of CU093738 vs. TrEMBL
Match: C0J4I8_CUCMA (RBP50 OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIV+LLEEHGPI+N+K
Sbjct: 339 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTK 398

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           LFEMNGKKQALIMFDTEEQATEALVCKHAS LSGSIIRISFSQLQ++
Sbjct: 399 LFEMNGKKQALIMFDTEEQATEALVCKHASSLSGSIIRISFSQLQSI 445

Query: 121  180
           
Sbjct: 459  445

Query: 181  240
           
Sbjct: 519  445

Query: 241  300
           
Sbjct: 579  445

Query: 301  322
           
Sbjct: 639  445

[Close]

BLAST of CU093738 vs. TrEMBL
Match: A0A0R0KU29_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G080500 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIH+S+L Q++TEEEIVSLLEEHG IVNSK
Sbjct: 297 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSK 356

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           +FEMNGKKQAL+ F+TEEQATEALVCKHAS LSGS++RISFSQLQ +
Sbjct: 357 VFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 403

Query: 121  180
           
Sbjct: 417  403

Query: 181  240
           
Sbjct: 477  403

Query: 241  300
           
Sbjct: 537  403

Query: 301  322
           
Sbjct: 597  403

[Close]

BLAST of CU093738 vs. TrEMBL
Match: I1JDD3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G080500 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIH+S+L Q++TEEEIVSLLEEHG IVNSK
Sbjct: 203 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSK 262

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           +FEMNGKKQAL+ F+TEEQATEALVCKHAS LSGS++RISFSQLQ +
Sbjct: 263 VFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 309

Query: 121  180
           
Sbjct: 323  309

Query: 181  240
           
Sbjct: 383  309

Query: 241  300
           
Sbjct: 443  309

Query: 301  322
           
Sbjct: 503  309

[Close]

BLAST of CU093738 vs. TrEMBL
Match: A0A0B2NUH6_GLYSO (Polypyrimidine tract-binding protein like 3 OS=Glycine soja GN=glysoja_000419 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIH+S+L Q++TEEEIVSLLEEHG IVNSK
Sbjct: 333 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSK 392

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           +FEMNGKKQAL+ F+TEEQATEALVCKHAS LSGS++RISFSQLQ +
Sbjct: 393 VFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 439

Query: 121  180
           
Sbjct: 453  439

Query: 181  240
           
Sbjct: 513  439

Query: 241  300
           
Sbjct: 573  439

Query: 301  322
           
Sbjct: 633  439

[Close]

BLAST of CU093738 vs. NCBI nr
Match: gi|778709849|ref|XP_011656467.1| (PREDICTED: polypyrimidine tract-binding protein homolog 3 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 7.2e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK
Sbjct: 338 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 397

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL
Sbjct: 398 LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 444

Query: 121  180
           
Sbjct: 458  444

Query: 181  240
           
Sbjct: 518  444

Query: 241  300
           
Sbjct: 578  444

Query: 301  322
           
Sbjct: 638  444

[Close]

BLAST of CU093738 vs. NCBI nr
Match: gi|700190680|gb|KGN45884.1| (hypothetical protein Csa_6G017000 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 7.2e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK
Sbjct: 353 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 412

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL
Sbjct: 413 LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 459

Query: 121  180
           
Sbjct: 473  459

Query: 181  240
           
Sbjct: 533  459

Query: 241  300
           
Sbjct: 593  459

Query: 301  322
           
Sbjct: 653  459

[Close]

BLAST of CU093738 vs. NCBI nr
Match: gi|659126205|ref|XP_008463064.1| (PREDICTED: polypyrimidine tract-binding protein homolog 3 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 7.2e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK
Sbjct: 338 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 397

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL
Sbjct: 398 LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 444

Query: 121  180
           
Sbjct: 458  444

Query: 181  240
           
Sbjct: 518  444

Query: 241  300
           
Sbjct: 578  444

Query: 301  322
           
Sbjct: 638  444

[Close]

BLAST of CU093738 vs. NCBI nr
Match: gi|209362272|gb|ACI43571.1| (RBP50 [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIV+LLEEHGPI+N+K
Sbjct: 339 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTK 398

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           LFEMNGKKQALIMFDTEEQATEALVCKHAS LSGSIIRISFSQLQ++
Sbjct: 399 LFEMNGKKQALIMFDTEEQATEALVCKHASSLSGSIIRISFSQLQSI 445

Query: 121  180
           
Sbjct: 459  445

Query: 181  240
           
Sbjct: 519  445

Query: 241  300
           
Sbjct: 579  445

Query: 301  322
           
Sbjct: 639  445

[Close]

BLAST of CU093738 vs. NCBI nr
Match: gi|947122068|gb|KRH70274.1| (hypothetical protein GLYMA_02G080500 [Glycine max])

HSP 1 Score: 192.6 bits (488), Expect = 5.9e-46
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSK 60
           ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIH+S+L Q++TEEEIVSLLEEHG IVNSK
Sbjct: 203 ADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSK 262

Query: 61  LFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 120
           +FEMNGKKQAL+ F+TEEQATEALVCKHAS LSGS++RISFSQLQ +
Sbjct: 263 VFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 309

Query: 121  180
           
Sbjct: 323  309

Query: 181  240
           
Sbjct: 383  309

Query: 241  300
           
Sbjct: 443  309

Query: 301  322
           
Sbjct: 503  309

The following BLAST results are available for this feature:

BLAST of CU093738 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTBP3_ARATH	7.9e-43	74.53	Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43...	[more]
PTBP1_HUMAN	7.5e-09	32.35	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	[more]
PTBP1_PIG	9.8e-09	32.35	Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1	[more]
PTBP1_BOVIN	2.2e-08	31.37	Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1	[more]

BLAST of CU093738 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAL8_CUCSA	1.7e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017000 PE=4 SV=1	[more]
C0J4I8_CUCMA	2.7e-50	94.39	RBP50 OS=Cucurbita maxima PE=2 SV=1	[more]
A0A0R0KU29_SOYBN	1.4e-46	85.98	Uncharacterized protein OS=Glycine max GN=GLYMA_02G080500 PE=4 SV=1	[more]
I1JDD3_SOYBN	1.4e-46	85.98	Uncharacterized protein OS=Glycine max GN=GLYMA_02G080500 PE=4 SV=1	[more]
A0A0B2NUH6_GLYSO	1.4e-46	85.98	Polypyrimidine tract-binding protein like 3 OS=Glycine soja GN=glysoja_000419 PE...	[more]

BLAST of CU093738 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709849\|ref\|XP_011656467.1\|	7.2e-52	100.00	PREDICTED: polypyrimidine tract-binding protein homolog 3 [Cucumis sativus]	[more]
gi\|700190680\|gb\|KGN45884.1\|	7.2e-52	100.00	hypothetical protein Csa_6G017000 [Cucumis sativus]	[more]
gi\|659126205\|ref\|XP_008463064.1\|	7.2e-52	100.00	PREDICTED: polypyrimidine tract-binding protein homolog 3 [Cucumis melo]	[more]
gi\|209362272\|gb\|ACI43571.1\|	1.1e-49	94.39	RBP50 [Cucurbita maxima]	[more]
gi\|947122068\|gb\|KRH70274.1\|	5.9e-46	85.98	hypothetical protein GLYMA_02G080500 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G017000	Csa6G017000	gene
Csa6G017010	Csa6G017010	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02L6FP3	FKNP3UI02L6FP3	EST
FKNP3UI02LMXEX	FKNP3UI02LMXEX	EST
FKNP3UI02M1G1Q	FKNP3UI02M1G1Q	EST
FKNP3UI02N2FKO	FKNP3UI02N2FKO	EST
FKNP3UI02N60Y0	FKNP3UI02N60Y0	EST
FKNP3UI02OBRGN	FKNP3UI02OBRGN	EST
FKNP3UI02OPR15	FKNP3UI02OPR15	EST
H0152954	H0152954	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..95 score: 5.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 31..100 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 30..104 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 17..106 score: 1.5
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 21..105 score: 6.52