CU091804 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU091804
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 2805497 .. 2806585 (+)
Sequence length	311

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTGCTATGCGATAAAATTGCTGTATAGCTTACAGTATCACTCAAGTTGTCAGATTTTCCTAGCTGCCCCGGAGATCCAACCAAGCATCCACATCCACCAAAAAAGTTTAGCCCTGTTTTCCTTTTTCTTCGGAGATGTACTCCATGATAACCGTGAAACTTTAGACCCCTTAATATGAGTCTATCCCCCTTTTCTATTTTAAAACTGTTTGTACTTGCTTCTACTAAGGGCCTAATAATGTCAACTTTATCATCAGCCATACCACTGAGTGAAGGAAACCCAATAGAGATTTAAGAAGATGAACGACGAAT

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU091804 vs. TrEMBL
Match: A0A0A0KU85_CUCSA (7,8-dihydroneopterin aldolase OS=Cucumis sativus GN=Csa_4G026280 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-23
Identity = 63/82 (76.83%), Postives = 65/82 (79.27%), Query Frame = -1


Query: 15  MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCL 74
           MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLR K +TG  F       
Sbjct: 1   MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLREK-ETGQTFLVDVDAW 60

Query: 75  VGSPGQLGKSDNLSDTVSYTAI 134
           +      GKSDNLSDTVSYTAI
Sbjct: 61  LDLRA-AGKSDNLSDTVSYTAI 80

Query: 135  194
           
Sbjct: 121  80

Query: 195  254
           
Sbjct: 181  80

Query: 255  261
           
Sbjct: 241  80

[Close]

BLAST of CU091804 vs. TrEMBL
Match: W1P9Z5_AMBTC (7,8-dihydroneopterin aldolase OS=Amborella trichopoda GN=AMTR_s00058p00214740 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = -1


Query: 15  KIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKSDNLSDTVSYT 74
           +I KGD+LI+RGLKFHGYHGVH   ++K G  F       +    + G++DNL+DTVSY+
Sbjct: 5   EISKGDKLIMRGLKFHGYHGVH-EAEKKLGQKFLVDIDAWLDLK-KAGETDNLNDTVSYS 64

Query: 75  AI 134
            I
Sbjct: 65  EI 64

Query: 135  194
           
Sbjct: 125  64

Query: 195  201
           
Sbjct: 185  64

[Close]

BLAST of CU091804 vs. TrEMBL
Match: A0A068UQN4_COFCA (7,8-dihydroneopterin aldolase OS=Coffea canephora GN=GSCOC_T00031337001 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = -1


Query: 15  PLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKS 74
           P + A T+   +  GD+L+LRGLKFHGYHGV  + +RK G  F              G S
Sbjct: 5   PSISADTDHKVLIMGDKLVLRGLKFHGYHGVK-QEERKLGQKFLIDVDAWTDLRA-AGTS 64

Query: 75  DNLSDTVSYTAI 134
           D+LSDT+SYTAI
Sbjct: 65  DHLSDTISYTAI 74

Query: 135  194
           
Sbjct: 125  74

Query: 195  231
           
Sbjct: 185  74

[Close]

BLAST of CU091804 vs. TrEMBL
Match: A0A068V5J2_COFCA (7,8-dihydroneopterin aldolase OS=Coffea canephora GN=GSCOC_T00015853001 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = -1


Query: 15  PLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKS 74
           P + A T   ++ +GD+L+LRGLKFHGYHGV  + +RK G  F       +      G S
Sbjct: 5   PSICAITEHKELIRGDKLVLRGLKFHGYHGVK-QEERKLGQKFLIDVDAWMDLRA-AGTS 64

Query: 75  DNLSDTVSYTAI 134
           D+LSDT+SYTAI
Sbjct: 65  DHLSDTISYTAI 74

Query: 135  194
           
Sbjct: 125  74

Query: 195  231
           
Sbjct: 185  74

[Close]

BLAST of CU091804 vs. TrEMBL
Match: W1PGF8_AMBTC (7,8-dihydroneopterin aldolase OS=Amborella trichopoda GN=AMTR_s00058p00214360 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-06
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = -1


Query: 15  KIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKSDNLSDTVSYT 74
           +I KGD+LI+RGLKFHGYHGVH   ++K G  F       +    + G++DNL+DTVSY 
Sbjct: 5   EISKGDKLIMRGLKFHGYHGVH-EAEKKLGQKFLVDIDAWLDLK-KAGETDNLNDTVSYF 64

Query: 75  AI 134
            I
Sbjct: 65  EI 64

Query: 135  194
           
Sbjct: 125  64

Query: 195  201
           
Sbjct: 185  64

[Close]

BLAST of CU091804 vs. NCBI nr
Match: gi|449458291|ref|XP_004146881.1| (PREDICTED: dihydroneopterin aldolase 2 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-23
Identity = 63/82 (76.83%), Postives = 65/82 (79.27%), Query Frame = -1


Query: 15  MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCL 74
           MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLR K +TG  F       
Sbjct: 1   MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLREK-ETGQTFLVDVDAW 60

Query: 75  VGSPGQLGKSDNLSDTVSYTAI 134
           +      GKSDNLSDTVSYTAI
Sbjct: 61  LDLRA-AGKSDNLSDTVSYTAI 80

Query: 135  194
           
Sbjct: 121  80

Query: 195  254
           
Sbjct: 181  80

Query: 255  261
           
Sbjct: 241  80

[Close]

BLAST of CU091804 vs. NCBI nr
Match: gi|659111322|ref|XP_008455695.1| (PREDICTED: dihydroneopterin aldolase-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = -1


Query: 15  MADDKVDIIRPLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCL 74
           MADDKVDIIRPLVEASTNSFKIEK DRLILRGLKFHGYHGVHL+ K +TG  F       
Sbjct: 1   MADDKVDIIRPLVEASTNSFKIEKADRLILRGLKFHGYHGVHLQEK-ETGQTFLVDVDAW 60

Query: 75  VGSPGQLGKSDNLSDTVSYTAI 134
           +      GKSD+LSDTVSYTAI
Sbjct: 61  LDLRA-AGKSDDLSDTVSYTAI 80

Query: 135  194
           
Sbjct: 121  80

Query: 195  254
           
Sbjct: 181  80

Query: 255  261
           
Sbjct: 241  80

[Close]

BLAST of CU091804 vs. NCBI nr
Match: gi|661880556|emb|CDP15774.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = -1


Query: 15  PLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKS 74
           P + A T   ++ +GD+L+LRGLKFHGYHGV  + +RK G  F       +      G S
Sbjct: 5   PSICAITEHKELIRGDKLVLRGLKFHGYHGVK-QEERKLGQKFLIDVDAWMDLRA-AGTS 64

Query: 75  DNLSDTVSYTAI 134
           D+LSDT+SYTAI
Sbjct: 65  DHLSDTISYTAI 74

Query: 135  194
           
Sbjct: 125  74

Query: 195  231
           
Sbjct: 185  74

[Close]

BLAST of CU091804 vs. NCBI nr
Match: gi|661885957|emb|CDP10574.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = -1


Query: 15  PLVEASTNSFKIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKS 74
           P + A T+   +  GD+L+LRGLKFHGYHGV  + +RK G  F              G S
Sbjct: 5   PSISADTDHKVLIMGDKLVLRGLKFHGYHGVK-QEERKLGQKFLIDVDAWTDLRA-AGTS 64

Query: 75  DNLSDTVSYTAI 134
           D+LSDT+SYTAI
Sbjct: 65  DHLSDTISYTAI 74

Query: 135  194
           
Sbjct: 125  74

Query: 195  231
           
Sbjct: 185  74

[Close]

BLAST of CU091804 vs. NCBI nr
Match: gi|586701506|ref|XP_006845027.1| (PREDICTED: dihydroneopterin aldolase 2 [Amborella trichopoda])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-06
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = -1


Query: 15  KIEKGDRLILRGLKFHGYHGVHLRRKRKTGLNFFGGCGCLVGSPGQLGKSDNLSDTVSYT 74
           +I KGD+LI+RGLKFHGYHGVH   ++K G  F       +    + G++DNL+DTVSY+
Sbjct: 5   EISKGDKLIMRGLKFHGYHGVH-EAEKKLGQKFLVDIDAWLDLK-KAGETDNLNDTVSYS 64

Query: 75  AI 134
            I
Sbjct: 65  EI 64

Query: 135  194
           
Sbjct: 125  64

Query: 195  201
           
Sbjct: 185  64

The following BLAST results are available for this feature:

BLAST of CU091804 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU85_CUCSA	6.4e-23	76.83	7,8-dihydroneopterin aldolase OS=Cucumis sativus GN=Csa_4G026280 PE=3 SV=1	[more]
W1P9Z5_AMBTC	2.4e-06	50.00	7,8-dihydroneopterin aldolase OS=Amborella trichopoda GN=AMTR_s00058p00214740 PE...	[more]
A0A068UQN4_COFCA	2.4e-06	47.22	7,8-dihydroneopterin aldolase OS=Coffea canephora GN=GSCOC_T00031337001 PE=3 SV=...	[more]
A0A068V5J2_COFCA	2.4e-06	47.22	7,8-dihydroneopterin aldolase OS=Coffea canephora GN=GSCOC_T00015853001 PE=3 SV=...	[more]
W1PGF8_AMBTC	5.4e-06	50.00	7,8-dihydroneopterin aldolase OS=Amborella trichopoda GN=AMTR_s00058p00214360 PE...	[more]

BLAST of CU091804 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458291\|ref\|XP_004146881.1\|	5.3e-23	76.83	PREDICTED: dihydroneopterin aldolase 2 [Cucumis sativus]	[more]
gi\|659111322\|ref\|XP_008455695.1\|	2.9e-21	73.17	PREDICTED: dihydroneopterin aldolase-like [Cucumis melo]	[more]
gi\|661880556\|emb\|CDP15774.1\|	2.7e-06	47.22	unnamed protein product [Coffea canephora]	[more]
gi\|661885957\|emb\|CDP10574.1\|	2.7e-06	47.22	unnamed protein product [Coffea canephora]	[more]
gi\|586701506\|ref\|XP_006845027.1\|	3.5e-06	50.00	PREDICTED: dihydroneopterin aldolase 2 [Amborella trichopoda]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G026280	Csa4G026280	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0194467	G0194467	EST
H0127544	H0127544	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.1130.10		coord: 26..83 score: 2.