CU091717 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU091717
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 7584310 .. 7586090 (+)
Sequence length	281

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTTCCACTGGATGATTATACAAAGCCCCAAATGCATATGGAACAACAAGCCTATGGTGCTGAGAATGAATGTGTCTGTACAGAAACTTGTTATGATGCATGTATCGGTGTGCAAAGTACTGCCACGTGTCTAGAATGAACATCGCAGCTAAAAATTGCAAAACAACCATTGGCCATGACTTTGGAACTGCATTGCTTCCATCATCATTTCCAGTCAACTTAAAGAGGATGATGGCGACAATAGCCTGAATGAATTGCTAGAAAAAGACCGCCCCGAAAAC

Library


Library category	ESTs
gynoecious flower library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU091717 vs. Swiss-Prot
Match: SBH1_ARATH (Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-24
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = -1


Query: 3   LFKLTGND-DGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHR 62
           LF +TG+D +   A   S+ ++  QF+ AM +LDTWQYF HRYMH NKFLY+HIHSQHHR
Sbjct: 74  LFTVTGSDAEADKAQQFSFLVLARQFVTAMIVLDTWQYFMHRYMHQNKFLYKHIHSQHHR 133

Query: 63  LVVPYAFGALYNHPVE 122
           L+VPYA+GALYNHPVE
Sbjct: 134 LIVPYAYGALYNHPVE 149

Query: 123  182
           
Sbjct: 194  149

Query: 183  228
           
Sbjct: 254  149

[Close]

BLAST of CU091717 vs. Swiss-Prot
Match: SBH2_ARATH (Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.7e-24
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = -1


Query: 3   LFKLTGND-DGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHR 62
           LFK+TG+D D +     S  ++  QF+ AM ++DTWQYF HRYMH NKFLY+HIHSQHHR
Sbjct: 73  LFKITGSDADAATTQQFSILLLARQFIIAMLVIDTWQYFIHRYMHLNKFLYKHIHSQHHR 132

Query: 63  LVVPYAFGALYNHPVE 122
           L+VPY++GALYNHP+E
Sbjct: 133 LIVPYSYGALYNHPLE 148

Query: 123  182
           
Sbjct: 193  148

Query: 183  228
           
Sbjct: 253  148

[Close]

BLAST of CU091717 vs. Swiss-Prot
Match: SUR2_SCHPO (Sphingolipid C4-hydroxylase sur2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sur2 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-16
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = -1


Query: 3   QFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRLVVPYAFGALYNHPVE 62
           Q+  A FI+D+WQYF HRY+H+NK LY  IH+ HHRL VPYA GALYNHP E
Sbjct: 133 QYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAHHHRLQVPYAMGALYNHPFE 184

Query: 63   122
           
Sbjct: 193  184

Query: 123  159
           
Sbjct: 253  184

[Close]

BLAST of CU091717 vs. Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.1e-14
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = -1


Query: 3   MVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRLVVPYAFGALYNHPVE 62
           M  L+  A    +DTWQYF HR MH NK LY+  HS HH L VPYA+GAL+N+PVE
Sbjct: 156 MSALKIFAGFLFVDTWQYFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVE 211

Query: 63   122
           
Sbjct: 216  211

Query: 123  171
           
Sbjct: 276  211

[Close]

BLAST of CU091717 vs. TrEMBL
Match: A0A0A0LJX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LFKLTGNDDGSNAVPKSWPMVVLQFL AMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL
Sbjct: 41  LFKLTGNDDGSNAVPKSWPMVVLQFLTAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 100

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 101 VVPYAFGALYNHPVE 115

Query: 123  182
           
Sbjct: 161  115

Query: 183  228
           
Sbjct: 221  115

[Close]

BLAST of CU091717 vs. TrEMBL
Match: M5XMN9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010258mg PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-27
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LF +TGNDDG + V  S+  +  QF+ AM +LDTWQYF HRYMHHNKFLY+HIHSQHHRL
Sbjct: 72  LFTVTGNDDGDSGVKPSFIDLARQFVTAMIVLDTWQYFMHRYMHHNKFLYKHIHSQHHRL 131

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 132 VVPYAFGALYNHPVE 146

Query: 123  182
           
Sbjct: 192  146

Query: 183  228
           
Sbjct: 252  146

[Close]

BLAST of CU091717 vs. TrEMBL
Match: D7TN95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02310 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-26
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPK-SWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHR 62
           LF +TG+D G+ A PK S  ++  QF  AMF+LDTWQYF HRYMHHNKFLYRHIHSQHHR
Sbjct: 72  LFTVTGDDSGAAAGPKPSLIVLARQFFIAMFVLDTWQYFMHRYMHHNKFLYRHIHSQHHR 131

Query: 63  LVVPYAFGALYNHPVE 122
           LVVPYAFGALYNHP+E
Sbjct: 132 LVVPYAFGALYNHPLE 147

Query: 123  182
           
Sbjct: 192  147

Query: 183  228
           
Sbjct: 252  147

[Close]

BLAST of CU091717 vs. TrEMBL
Match: A0A0A0KQL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605020 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.5e-26
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LFK+T  D      PKSW  +V+QF+ AM +LDTWQYF HRYMH NKFLY+H+HSQHHRL
Sbjct: 72  LFKVTETDGEVATGPKSWLTIVVQFIVAMLVLDTWQYFIHRYMHQNKFLYKHVHSQHHRL 131

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHP+E
Sbjct: 132 VVPYAFGALYNHPLE 146

Query: 123  182
           
Sbjct: 192  146

Query: 183  228
           
Sbjct: 252  146

[Close]

BLAST of CU091717 vs. TrEMBL
Match: W9R575_9ROSA (Sphingoid base hydroxylase 2 OS=Morus notabilis GN=L484_003193 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPK-SWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHR 62
           LF +TGND G  A PK S  ++  QF+ AM +LDTWQYF HRYMHHNKFLY+HIHSQHHR
Sbjct: 72  LFTVTGNDSGDAAGPKPSLIVLARQFVTAMLVLDTWQYFMHRYMHHNKFLYKHIHSQHHR 131

Query: 63  LVVPYAFGALYNHPVE 122
           LVVPYAFGALYNHP+E
Sbjct: 132 LVVPYAFGALYNHPLE 147

Query: 123  182
           
Sbjct: 192  147

Query: 183  228
           
Sbjct: 252  147

[Close]

BLAST of CU091717 vs. NCBI nr
Match: gi|449442297|ref|XP_004138918.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LFKLTGNDDGSNAVPKSWPMVVLQFL AMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL
Sbjct: 72  LFKLTGNDDGSNAVPKSWPMVVLQFLTAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 131

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 132 VVPYAFGALYNHPVE 146

Query: 123  182
           
Sbjct: 192  146

Query: 183  228
           
Sbjct: 252  146

[Close]

BLAST of CU091717 vs. NCBI nr
Match: gi|700206260|gb|KGN61379.1| (hypothetical protein Csa_2G101090 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LFKLTGNDDGSNAVPKSWPMVVLQFL AMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL
Sbjct: 41  LFKLTGNDDGSNAVPKSWPMVVLQFLTAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 100

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 101 VVPYAFGALYNHPVE 115

Query: 123  182
           
Sbjct: 161  115

Query: 183  228
           
Sbjct: 221  115

[Close]

BLAST of CU091717 vs. NCBI nr
Match: gi|659082180|ref|XP_008441706.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-36
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LFK+TGNDDGSNAVPKSWPMVVLQFL AMF+LDTWQYFAHRYMHHNKFLYRHIHSQHHRL
Sbjct: 72  LFKVTGNDDGSNAVPKSWPMVVLQFLTAMFVLDTWQYFAHRYMHHNKFLYRHIHSQHHRL 131

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 132 VVPYAFGALYNHPVE 146

Query: 123  182
           
Sbjct: 192  146

Query: 183  228
           
Sbjct: 252  146

[Close]

BLAST of CU091717 vs. NCBI nr
Match: gi|645229801|ref|XP_008221629.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Prunus mume])

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LF +TGNDDG + V  S+  +  QF+ AM +LDTWQYF HRYMHHNKFLY+HIHSQHHRL
Sbjct: 72  LFTVTGNDDGDSGVKPSFIDLARQFVTAMIVLDTWQYFMHRYMHHNKFLYKHIHSQHHRL 131

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 132 VVPYAFGALYNHPVE 146

Query: 123  182
           
Sbjct: 192  146

Query: 183  228
           
Sbjct: 252  146

[Close]

BLAST of CU091717 vs. NCBI nr
Match: gi|596288798|ref|XP_007225995.1| (hypothetical protein PRUPE_ppa010258mg [Prunus persica])

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = -1


Query: 3   LFKLTGNDDGSNAVPKSWPMVVLQFLAAMFILDTWQYFAHRYMHHNKFLYRHIHSQHHRL 62
           LF +TGNDDG + V  S+  +  QF+ AM +LDTWQYF HRYMHHNKFLY+HIHSQHHRL
Sbjct: 72  LFTVTGNDDGDSGVKPSFIDLARQFVTAMIVLDTWQYFMHRYMHHNKFLYKHIHSQHHRL 131

Query: 63  VVPYAFGALYNHPVE 122
           VVPYAFGALYNHPVE
Sbjct: 132 VVPYAFGALYNHPVE 146

Query: 123  182
           
Sbjct: 192  146

Query: 183  228
           
Sbjct: 252  146

The following BLAST results are available for this feature:

BLAST of CU091717 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SBH1_ARATH	2.0e-24	65.79	Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1	[more]
SBH2_ARATH	9.7e-24	63.16	Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1	[more]
SUR2_SCHPO	5.7e-16	67.31	Sphingolipid C4-hydroxylase sur2 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
SUR2_YEAST	9.1e-14	58.93	Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of CU091717 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJX9_CUCSA	4.8e-38	98.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1	[more]
M5XMN9_PRUPE	5.0e-27	74.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010258mg PE=3 SV=1	[more]
D7TN95_VITVI	5.5e-26	75.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02310 PE=3 SV=...	[more]
A0A0A0KQL6_CUCSA	9.5e-26	70.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605020 PE=3 SV=1	[more]
W9R575_9ROSA	1.2e-25	73.68	Sphingoid base hydroxylase 2 OS=Morus notabilis GN=L484_003193 PE=3 SV=1	[more]

BLAST of CU091717 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442297\|ref\|XP_004138918.1\|	1.3e-36	98.67	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus]	[more]
gi\|700206260\|gb\|KGN61379.1\|	1.3e-36	98.67	hypothetical protein Csa_2G101090 [Cucumis sativus]	[more]
gi\|659082180\|ref\|XP_008441706.1\|	3.8e-36	96.00	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo]	[more]
gi\|645229801\|ref\|XP_008221629.1\|	1.4e-25	74.67	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Prunus mume]	[more]
gi\|596288798\|ref\|XP_007225995.1\|	1.4e-25	74.67	hypothetical protein PRUPE_ppa010258mg [Prunus persica]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G101090	Csa2G101090	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0190179	G0190179	EST
G0198134	G0198134	EST
H0116216	H0116216	EST