CU091110 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU091110
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 11088457 .. 11090027 (+)
Sequence length	293

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGTGTAACAATAGAATCCAATCCATACCTTGTGTCTTTATTCGACTTAATTATAGCTACACTTCTGCCATTGCAGCTCTCGGACTGAATCCGCCGAAGAAGAGTGGTAGTTTTCCCAGCAAACATCGGCCCCAGAATGACATGAATCTCGCCAGAGGGCGGTGACAAAGAGGCCCTCATCTGGGGGTTTCGATTCTGGGTTGAAAAAAACCCTTTCGAGGGCAACGAAATAGTGGGTGTTTTGAAAGTGAAAAAATTAGAGAGTTGGGTGAACATAGGGCCGCATTGCGCAG

Library


Library category	ESTs
fruit (8DPP) library	3
gynoecious flower library	1

Homology

[Close]

BLAST of CU091110 vs. Swiss-Prot
Match: KITHB_ARATH (Thymidine kinase b OS=Arabidopsis thaliana GN=TK1B PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-15
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = -3


Query: 1   TISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVA 60
           T  L +K    T + + Q  +S SP  GEIHV++GPMF+GKTTTLLRRI +E   G+ +A
Sbjct: 52  TRKLQTKATRVTSSSSSQPLSSSSP--GEIHVVVGPMFSGKTTTLLRRILAERETGKRIA 111

Query: 61  IIKSNKDTRYGLDSIVTH 120
           IIKSNKDTRY  +SIVTH
Sbjct: 112 IIKSNKDTRYCTESIVTH 127

Query: 121  180
           
Sbjct: 172  127

Query: 181  235
           
Sbjct: 232  127

[Close]

BLAST of CU091110 vs. Swiss-Prot
Match: KITH_ORYSJ (Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = -3


Query: 1   MRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNG-RSVAIIKSNKDTRYGLDSIVT 60
           M A  S P GEIHVI+GPMFAGKTT LLRR+Q E+  G R+VA+IKS+KD RYGLDS+VT
Sbjct: 59  MEAQPSYP-GEIHVIVGPMFAGKTTALLRRVQVEAGTGSRNVALIKSDKDNRYGLDSVVT 118

Query: 61  H 120
           H
Sbjct: 119 H 118

Query: 121  180
           
Sbjct: 179  118

[Close]

BLAST of CU091110 vs. Swiss-Prot
Match: KITHA_ARATH (Thymidine kinase a OS=Arabidopsis thaliana GN=TK1A PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = -3


Query: 1   SGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 60
           SG +HVI+GPMF+GK+T+LLRRI+SE  +GRSVA++KS+KDTRY  DS+VTH
Sbjct: 30  SGAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTH 81

Query: 61   120
           
Sbjct: 90   81

Query: 121  157
           
Sbjct: 150  81

[Close]

BLAST of CU091110 vs. Swiss-Prot
Match: KITH_SWPVK (Thymidine kinase OS=Swinepox virus (strain Kasza) GN=TK PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-06
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = -3


Query: 1   GEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 60
           G IH+ILGPMF+GK+T L+R +        +  +IK +KD RYG D++ TH
Sbjct: 4   GFIHLILGPMFSGKSTELIRLVNRYQIATYNCRVIKYSKDNRYGNDAVYTH 54

Query: 61   120
           
Sbjct: 64   54

Query: 121  154
           
Sbjct: 124  54

[Close]

BLAST of CU091110 vs. TrEMBL
Match: A0A0A0LYL4_CUCSA (Thymidine kinase OS=Cucumis sativus GN=Csa_1G181480 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -3


Query: 1   AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 60
           AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK
Sbjct: 105 AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 164

Query: 61  TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 120
           TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH
Sbjct: 165 TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 201

Query: 121  180
           
Sbjct: 225  201

Query: 181  240
           
Sbjct: 285  201

Query: 241  292
           
Sbjct: 345  201

[Close]

BLAST of CU091110 vs. TrEMBL
Match: A0A067GT29_CITSI (Thymidine kinase OS=Citrus sinensis GN=CISIN_1g023563mg PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-22
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = -3


Query: 1   PSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKS 60
           P    FS QNRN    AS+S PSGEIHVI+GPMFAGKTTTLLRRIQ+E+  GR+VA+IKS
Sbjct: 55  PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114

Query: 61  NKDTRYGLDSIVTH 120
           NKDTRYGLDSIVTH
Sbjct: 115 NKDTRYGLDSIVTH 128

Query: 121  180
           
Sbjct: 175  128

Query: 181  223
           
Sbjct: 235  128

[Close]

BLAST of CU091110 vs. TrEMBL
Match: A0A067GSQ2_CITSI (Thymidine kinase OS=Citrus sinensis GN=CISIN_1g023563mg PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-22
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = -3


Query: 1   PSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKS 60
           P    FS QNRN    AS+S PSGEIHVI+GPMFAGKTTTLLRRIQ+E+  GR+VA+IKS
Sbjct: 55  PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114

Query: 61  NKDTRYGLDSIVTH 120
           NKDTRYGLDSIVTH
Sbjct: 115 NKDTRYGLDSIVTH 128

Query: 121  180
           
Sbjct: 175  128

Query: 181  223
           
Sbjct: 235  128

[Close]

BLAST of CU091110 vs. TrEMBL
Match: A0A067LDR5_JATCU (Thymidine kinase OS=Jatropha curcas GN=JCGZ_02929 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-21
Identity = 59/86 (68.60%), Postives = 65/86 (75.58%), Query Frame = -3


Query: 1   NFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSE 60
           NF   K P    P    F  QNR  Q ++S S  SGEIHVI+GPMFAGKTTTLLRRI+SE
Sbjct: 37  NFLPIKPP----PPVPIFPIQNRCLQSKSSPSSSSGEIHVIVGPMFAGKTTTLLRRIESE 96

Query: 61  SCNGRSVAIIKSNKDTRYGLDSIVTH 120
           S +GR+VAIIKSNKDTRYGLDSIVTH
Sbjct: 97  SRDGRNVAIIKSNKDTRYGLDSIVTH 118

Query: 121  180
           
Sbjct: 157  118

Query: 181  240
           
Sbjct: 217  118

Query: 241  259
           
Sbjct: 277  118

[Close]

BLAST of CU091110 vs. TrEMBL
Match: I1L012_SOYBN (Thymidine kinase OS=Glycine max GN=GLYMA_09G011500 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = -3


Query: 1   MFTQLSNFFTFKTPTISLP------------SKGFFST-QNRNPQMRASLSPPSGEIHVI 60
           +F+  S+ F+F++    +P            S  F  T QNR+ Q   S  PPSGEIHVI
Sbjct: 21  LFSLPSSRFSFRSNPRRIPNRLLRLNPSPCSSNNFCCTIQNRSLQTEPS-PPPSGEIHVI 80

Query: 61  LGPMFAGKTTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 120
           +GPMFAGKTT+LLRRIQSE+ NGR+VAIIKS+KDTRYGLDSIVTH
Sbjct: 81  VGPMFAGKTTSLLRRIQSETTNGRNVAIIKSSKDTRYGLDSIVTH 124

Query: 121  180
           
Sbjct: 141  124

Query: 181  240
           
Sbjct: 201  124

Query: 241  277
           
Sbjct: 261  124

[Close]

BLAST of CU091110 vs. NCBI nr
Match: gi|778659746|ref|XP_011654956.1| (PREDICTED: thymidine kinase [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -3


Query: 1   AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 60
           AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK
Sbjct: 33  AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 92

Query: 61  TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 120
           TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH
Sbjct: 93  TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 129

Query: 121  180
           
Sbjct: 153  129

Query: 181  240
           
Sbjct: 213  129

Query: 241  292
           
Sbjct: 273  129

[Close]

BLAST of CU091110 vs. NCBI nr
Match: gi|700209940|gb|KGN65036.1| (Thymidine kinase [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -3


Query: 1   AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 60
           AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK
Sbjct: 105 AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 164

Query: 61  TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 120
           TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH
Sbjct: 165 TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 201

Query: 121  180
           
Sbjct: 225  201

Query: 181  240
           
Sbjct: 285  201

Query: 241  292
           
Sbjct: 345  201

[Close]

BLAST of CU091110 vs. NCBI nr
Match: gi|659127259|ref|XP_008463610.1| (PREDICTED: thymidine kinase-like [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = -3


Query: 1   AQCGPMFTQLSNFFTFKTPTISLPSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGK 60
           AQCGPMFTQ+SNFFTFKTPT SLPSKGFFSTQNRNPQ RASLSPPSGEIHVILGPMFAGK
Sbjct: 33  AQCGPMFTQVSNFFTFKTPTTSLPSKGFFSTQNRNPQTRASLSPPSGEIHVILGPMFAGK 92

Query: 61  TTTLLRRIQSESCNGRSVAIIKSNKDTRYGLDSIVTH 120
           TTTLLRRIQSESCNGR+VAIIKSNKDTRYGLDSIVTH
Sbjct: 93  TTTLLRRIQSESCNGRNVAIIKSNKDTRYGLDSIVTH 129

Query: 121  180
           
Sbjct: 153  129

Query: 181  240
           
Sbjct: 213  129

Query: 241  292
           
Sbjct: 273  129

[Close]

BLAST of CU091110 vs. NCBI nr
Match: gi|641859797|gb|KDO78487.1| (hypothetical protein CISIN_1g023563mg [Citrus sinensis])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = -3


Query: 1   PSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKS 60
           P    FS QNRN    AS+S PSGEIHVI+GPMFAGKTTTLLRRIQ+E+  GR+VA+IKS
Sbjct: 55  PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114

Query: 61  NKDTRYGLDSIVTH 120
           NKDTRYGLDSIVTH
Sbjct: 115 NKDTRYGLDSIVTH 128

Query: 121  180
           
Sbjct: 175  128

Query: 181  223
           
Sbjct: 235  128

[Close]

BLAST of CU091110 vs. NCBI nr
Match: gi|568825895|ref|XP_006467312.1| (PREDICTED: thymidine kinase [Citrus sinensis])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = -3


Query: 1   PSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKS 60
           P    FS QNRN    AS+S PSGEIHVI+GPMFAGKTTTLLRRIQ+E+  GR+VA+IKS
Sbjct: 55  PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114

Query: 61  NKDTRYGLDSIVTH 120
           NKDTRYGLDSIVTH
Sbjct: 115 NKDTRYGLDSIVTH 128

Query: 121  180
           
Sbjct: 175  128

Query: 181  223
           
Sbjct: 235  128

The following BLAST results are available for this feature:

BLAST of CU091110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KITHB_ARATH	3.0e-15	57.69	Thymidine kinase b OS=Arabidopsis thaliana GN=TK1B PE=1 SV=1	[more]
KITH_ORYSJ	1.1e-14	70.49	Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2	[more]
KITHA_ARATH	1.9e-14	69.23	Thymidine kinase a OS=Arabidopsis thaliana GN=TK1A PE=1 SV=1	[more]
KITH_SWPVK	2.5e-06	47.06	Thymidine kinase OS=Swinepox virus (strain Kasza) GN=TK PE=3 SV=1	[more]

BLAST of CU091110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYL4_CUCSA	4.1e-48	100.00	Thymidine kinase OS=Cucumis sativus GN=Csa_1G181480 PE=3 SV=1	[more]
A0A067GT29_CITSI	2.3e-22	75.68	Thymidine kinase OS=Citrus sinensis GN=CISIN_1g023563mg PE=3 SV=1	[more]
A0A067GSQ2_CITSI	2.3e-22	75.68	Thymidine kinase OS=Citrus sinensis GN=CISIN_1g023563mg PE=3 SV=1	[more]
A0A067LDR5_JATCU	4.3e-21	68.60	Thymidine kinase OS=Jatropha curcas GN=JCGZ_02929 PE=3 SV=1	[more]
I1L012_SOYBN	1.1e-19	58.10	Thymidine kinase OS=Glycine max GN=GLYMA_09G011500 PE=3 SV=1	[more]

BLAST of CU091110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659746\|ref\|XP_011654956.1\|	3.5e-48	100.00	PREDICTED: thymidine kinase [Cucumis sativus]	[more]
gi\|700209940\|gb\|KGN65036.1\|	3.5e-48	100.00	Thymidine kinase [Cucumis sativus]	[more]
gi\|659127259\|ref\|XP_008463610.1\|	3.2e-46	95.88	PREDICTED: thymidine kinase-like [Cucumis melo]	[more]
gi\|641859797\|gb\|KDO78487.1\|	1.9e-22	75.68	hypothetical protein CISIN_1g023563mg [Citrus sinensis]	[more]
gi\|568825895\|ref\|XP_006467312.1\|	1.9e-22	75.68	PREDICTED: thymidine kinase [Citrus sinensis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G181480	Csa1G181480	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LUREV	FKNP3UI02LUREV	EST
FKNP3UI02M1OZT	FKNP3UI02M1OZT	EST
FKNP3UI02NGTS9	FKNP3UI02NGTS9	EST
G0159309	G0159309	EST