CU090854 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU090854
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 8324297 .. 8324568 (-)
Sequence length281
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GTAGAGATAAGGGACTTTTCCCTTTGAAGTTTTCCTAAAATGATTCGGGTATGGGTCCTGTCAATTTGTTTTCGATCCAAAATGGAGAGTTCCAAGGCGGCGGAGGTTGGCAAGAGAGCTAGGGATGTAGCCAGTGAAAACGGTTGAAGGAGAGGTCGAGAACATCGAGATTGGAAAGGGAGCCGAGGAAGCTGGGGATAGGACCAGAGAAGAACCGTTCCAGCTTAGGTCAAGGTATTTGAGGTTGTTGTAGTTTTGCAATGGTAGGTGGGATGGGGCCA
Homology
[Close]
BLAST of CU090854 vs. Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 4.1e-06
Identity = 41/96 (42.71%), Postives = 46/96 (47.92%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           G I PTIAKL+             +GP+P FL  L NL+ +DLSFN        LS   P
Sbjct: 109 GHIQPTIAKLKNLTFLRLSWTNL-TGPVPEFLSQLKNLEYIDLSFND-------LSGSIP 168

Query: 71  PPWNSPFWIE------NKLTGPIPESF*ENFKGKSP 130
              +S   +E      NKLTGPIPESF   F GK P
Sbjct: 169 SSLSSLRKLEYLELSRNKLTGPIPESF-GTFSGKVP 195

Query: 131  190
           
Sbjct: 229  195

Query: 191  250
           
Sbjct: 289  195

Query: 251  281
           
Sbjct: 349  195

[Close]
BLAST of CU090854 vs. Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-06
Identity = 39/94 (41.49%), Postives = 44/94 (46.81%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERF----FSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LS 70
           G IPP IAKL+       K+ R      SGP+P+F   L NL  LDLSFN      P  S
Sbjct: 112 GQIPPAIAKLKHL-----KMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIP-GS 171

Query: 71  CQPPPPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               P   +     N LTGPIP+SF   F G +P
Sbjct: 172 LSLLPNLGALHLDRNHLTGPIPDSF-GKFAGSTP 198

Query: 131  190
           
Sbjct: 232  198

Query: 191  250
           
Sbjct: 292  198

Query: 251  281
           
Sbjct: 352  198

[Close]
BLAST of CU090854 vs. TrEMBL
Match: K7QJC6_CUCSA (Polygalacturonase-inhibiting protein 1 OS=Cucumis sativus GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-12
Identity = 53/90 (58.89%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGPIPSFLGSLSNLDVLDLSFNRF    P  S    
Sbjct: 107 GPIPPTIAKLNNLKYLDLSWNGL-SGPIPSFLGSLSNLDVLDLSFNRFTGSIP-SSLANL 166

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIPESF  NFKGK P
Sbjct: 167 RRLGTLHLDRNKLTGPIPESF-GNFKGKVP 193

Query: 131  190
           
Sbjct: 227  193

Query: 191  250
           
Sbjct: 287  193

Query: 251  281
           
Sbjct: 347  193

[Close]
BLAST of CU090854 vs. TrEMBL
Match: A0A0A0KZN2_CUCSA (Polygalacturonase-inhibiting protein OS=Cucumis sativus GN=Csa_4G154320 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 52/90 (57.78%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGP+PSFLGSLSNLDVLDLSFNRF    P  S    
Sbjct: 107 GPIPPTIAKLNNLKYLDLSWNGL-SGPVPSFLGSLSNLDVLDLSFNRFTGSIP-SSLANL 166

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIPESF  NFKGK P
Sbjct: 167 RRLGTLHLDRNKLTGPIPESF-GNFKGKVP 193

Query: 131  190
           
Sbjct: 227  193

Query: 191  250
           
Sbjct: 287  193

Query: 251  281
           
Sbjct: 347  193

[Close]
BLAST of CU090854 vs. TrEMBL
Match: Q7X9Q7_CUCME (Polygalacturonase-inhibiting protein OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-11
Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGPIPSFLGSLSNLD+LDLSFNRF    P  S    
Sbjct: 105 GPIPPTIAKLHNLKYLDLSWNGL-SGPIPSFLGSLSNLDILDLSFNRFTGSIP-SSLANL 164

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIP+SF  NFKGK P
Sbjct: 165 RRLGTLHLDRNKLTGPIPDSF-GNFKGKVP 191

Query: 131  190
           
Sbjct: 225  191

Query: 191  250
           
Sbjct: 285  191

Query: 251  281
           
Sbjct: 345  191

[Close]
BLAST of CU090854 vs. TrEMBL
Match: K9MZG2_CUCME (Polygalacturonase-inhibiting protein OS=Cucumis melo subsp. agrestis GN=pgip PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-11
Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGPIPSFLGSLSNLD+LDLSFNRF    P  S    
Sbjct: 105 GPIPPTIAKLHNLKYLDLSWNGL-SGPIPSFLGSLSNLDILDLSFNRFTGSIP-SSLANL 164

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIP+SF  NFKGK P
Sbjct: 165 RRLGTLHLDRNKLTGPIPDSF-GNFKGKVP 191

Query: 131  190
           
Sbjct: 225  191

Query: 191  250
           
Sbjct: 285  191

Query: 251  281
           
Sbjct: 345  191

[Close]
BLAST of CU090854 vs. NCBI nr
Match: gi|821595287|ref|NP_001295863.1| (polygalacturonase inhibitor-like precursor [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 53/90 (58.89%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGPIPSFLGSLSNLDVLDLSFNRF    P  S    
Sbjct: 107 GPIPPTIAKLNNLKYLDLSWNGL-SGPIPSFLGSLSNLDVLDLSFNRFTGSIP-SSLANL 166

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIPESF  NFKGK P
Sbjct: 167 RRLGTLHLDRNKLTGPIPESF-GNFKGKVP 193

Query: 131  190
           
Sbjct: 227  193

Query: 191  250
           
Sbjct: 287  193

Query: 251  281
           
Sbjct: 347  193

[Close]
BLAST of CU090854 vs. NCBI nr
Match: gi|700198674|gb|KGN53832.1| (Polygalacturonase-inhibiting protein [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-12
Identity = 52/90 (57.78%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGP+PSFLGSLSNLDVLDLSFNRF    P  S    
Sbjct: 107 GPIPPTIAKLNNLKYLDLSWNGL-SGPVPSFLGSLSNLDVLDLSFNRFTGSIP-SSLANL 166

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIPESF  NFKGK P
Sbjct: 167 RRLGTLHLDRNKLTGPIPESF-GNFKGKVP 193

Query: 131  190
           
Sbjct: 227  193

Query: 191  250
           
Sbjct: 287  193

Query: 251  281
           
Sbjct: 347  193

[Close]
BLAST of CU090854 vs. NCBI nr
Match: gi|940373614|ref|NP_001303611.1| (polygalacturonase inhibitor-like precursor [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-12
Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGPIPSFLGSLSNLD+LDLSFNRF    P  S    
Sbjct: 105 GPIPPTIAKLHNLKYLDLSWNGL-SGPIPSFLGSLSNLDILDLSFNRFTGSIP-SSLANL 164

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIP+SF  NFKGK P
Sbjct: 165 RRLGTLHLDRNKLTGPIPDSF-GNFKGKVP 191

Query: 131  190
           
Sbjct: 225  191

Query: 191  250
           
Sbjct: 285  191

Query: 251  281
           
Sbjct: 345  191

[Close]
BLAST of CU090854 vs. NCBI nr
Match: gi|425904953|gb|AFY10521.1| (polygalacturonase-inhibiting protein [Cucumis melo subsp. agrestis])

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-12
Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           GPIPPTIAKL   +          SGPIPSFLGSLSNLD+LDLSFNRF    P  S    
Sbjct: 105 GPIPPTIAKLHNLKYLDLSWNGL-SGPIPSFLGSLSNLDILDLSFNRFTGSIP-SSLANL 164

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
               +     NKLTGPIP+SF  NFKGK P
Sbjct: 165 RRLGTLHLDRNKLTGPIPDSF-GNFKGKVP 191

Query: 131  190
           
Sbjct: 225  191

Query: 191  250
           
Sbjct: 285  191

Query: 251  281
           
Sbjct: 345  191

[Close]
BLAST of CU090854 vs. NCBI nr
Match: gi|310007373|gb|ADP00760.1| (polygalacturonase-inhibiting protein [Carica papaya])

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = -2 

Query: 11  GPIPPTIAKLQQPQIP*PKLERFFSGPIPSFLGSLSNLDVLDLSFNRFHWLHP*LSCQPP 70
           G IPPTIAKL+   +         SGP+P FL  L NLD LDLSFN+     P  S    
Sbjct: 104 GTIPPTIAKLKN-LVSLTLSWTDLSGPVPGFLSQLKNLDYLDLSFNKLSGTIP-SSFSSF 163

Query: 71  PPWNSPFWIENKLTGPIPESF*ENFKGKSP 130
           P   +     NKLTG IPESF E+F+G+ P
Sbjct: 164 PKLRTLHLDRNKLTGSIPESF-ESFRGEVP 190

Query: 131  190
           
Sbjct: 224  190

Query: 191  250
           
Sbjct: 284  190

Query: 251  281
           
Sbjct: 344  190

The following BLAST results are available for this feature:
BLAST of CU090854 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGIP2_ARATH4.1e-0642.71Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2[more]
PGIP_VITVI5.4e-0641.49Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1[more]
BLAST of CU090854 vs. TrEMBL
Match NameE-valueIdentityDescription
K7QJC6_CUCSA7.8e-1258.89Polygalacturonase-inhibiting protein 1 OS=Cucumis sativus GN=PGIP1 PE=2 SV=1[more]
A0A0A0KZN2_CUCSA1.0e-1157.78Polygalacturonase-inhibiting protein OS=Cucumis sativus GN=Csa_4G154320 PE=4 SV=... [more]
Q7X9Q7_CUCME2.3e-1156.67Polygalacturonase-inhibiting protein OS=Cucumis melo PE=2 SV=1[more]
K9MZG2_CUCME2.3e-1156.67Polygalacturonase-inhibiting protein OS=Cucumis melo subsp. agrestis GN=pgip PE=... [more]
BLAST of CU090854 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|821595287|ref|NP_001295863.1|1.3e-1258.89polygalacturonase inhibitor-like precursor [Cucumis sativus][more]
gi|700198674|gb|KGN53832.1|1.7e-1257.78Polygalacturonase-inhibiting protein [Cucumis sativus][more]
gi|940373614|ref|NP_001303611.1|3.8e-1256.67polygalacturonase inhibitor-like precursor [Cucumis melo][more]
gi|425904953|gb|AFY10521.1|3.8e-1256.67polygalacturonase-inhibiting protein [Cucumis melo subsp. agrestis][more]
gi|310007373|gb|ADP00760.1|4.4e-0846.67polygalacturonase-inhibiting protein [Carica papaya][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G154320Csa4G154320gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0146510G0146510EST
H0108861H0108861EST